View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2687_low_22 (Length: 549)

Name: NF2687_low_22
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2687_low_22
NF2687_low_22
[»] chr4 (4 HSPs)
chr4 (1-538)||(32762128-32762665)
chr4 (302-336)||(52677398-52677432)
chr4 (319-383)||(25231146-25231210)
chr4 (310-366)||(52848167-52848223)
[»] chr8 (2 HSPs)
chr8 (307-365)||(32414716-32414774)
chr8 (322-383)||(7612469-7612530)
[»] chr2 (4 HSPs)
chr2 (307-360)||(34035853-34035906)
chr2 (319-360)||(10195568-10195609)
chr2 (319-360)||(29411690-29411731)
chr2 (319-383)||(17702990-17703054)
[»] chr5 (3 HSPs)
chr5 (308-360)||(15776585-15776637)
chr5 (319-360)||(26660749-26660790)
chr5 (319-360)||(26932342-26932383)
[»] chr3 (6 HSPs)
chr3 (307-383)||(42939940-42940016)
chr3 (319-366)||(53200795-53200842)
chr3 (319-365)||(47137952-47137998)
chr3 (307-356)||(51058255-51058304)
chr3 (307-355)||(49877155-49877203)
chr3 (319-383)||(50038286-50038350)
[»] chr6 (1 HSPs)
chr6 (319-383)||(9940619-9940683)


Alignment Details
Target: chr4 (Bit Score: 518; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 1 - 538
Target Start/End: Complemental strand, 32762665 - 32762128
Alignment:
Q  1 tgctctactttaccttcatttcagaacttatagctggatacatttgcaatgtattgtttaccctttttacaatgtaatttgagtactttactatggatac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  32762665 tgctctactttaccttcatttcagaacttatagctggatacatttgcaatttattgtttaccctttttacaatgtaatttgagtactttactatggatac 32762566  T
Q  101 aaccaactgtgaaacgtattccgaccacttagtgcatataatcattccaaatcattagtcattttatttagcttgacattttatgatgaatatttcaaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  32762565 aaccaactgtgaaacgtattccgaccacttagtgcatataatcattccaaatcattagtcattttatttagctagacattttatgatgaatatttcaaac 32762466  T
Q  201 aatttgtcattatctcgtgacttttataagaagcgtgctctagtgacaactttttgggacatcttttttgtgtgcgcaaatgctaccttattgagaaaat 300  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32762465 aatttgtcattttctcgtgacttttataagaagcgtgctctagtgacaactttttgggacatcttttttgtgtgcgcaaatgctaccttattgagaaaat 32762366  T
Q  301 agagggagtaattaatagtgcattgaaaattaaaattgacattcattttagaacaattttgttttgtaaaaggtacactcattatgggatagatgaggta 400  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32762365 agcgggagtaattaatagtgcattgaaaattaaaattgacattcattttagaacaattttgttttgtaaaaggtacactcattatgggatagatgaggta 32762266  T
Q  401 caaaacacaattttatgccctaaccctcattttccttgttggcactttatctttgtaacattgtgcatgtgaaaagaacaattgtttctcgttgttcatt 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32762265 caaaacacaattttatgccctaaccctcattttccttgttggcactttatctttgtaacattgtgcatgtgaaaagaacaattgtttctcgttgttcatt 32762166  T
Q  501 ttgaattggtggaaatgtaaatgttgttcactcttcat 538  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  32762165 ttgaattggtggaaatgtaaatgttgttctctcttcat 32762128  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 302 - 336
Target Start/End: Original strand, 52677398 - 52677432
Alignment:
Q  302 gagggagtaattaatagtgcattgaaaattaaaat 336  Q
    |||||||||||||||| ||||||||||||||||||    
T  52677398 gagggagtaattaatattgcattgaaaattaaaat 52677432  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 319 - 383
Target Start/End: Complemental strand, 25231210 - 25231146
Alignment:
Q  319 tgcattgaaaattaaaattgacattcattttagaacaattttgttttgtaaaaggtacactcatt 383  Q
    ||||||| ||||| ||| |||||||||||||| ||||||||| |||||  ||||  |||||||||    
T  25231210 tgcattggaaattgaaagtgacattcattttaaaacaatttttttttgctaaagcgacactcatt 25231146  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 310 - 366
Target Start/End: Original strand, 52848167 - 52848223
Alignment:
Q  310 aattaatagtgcattgaaaattaaaattgacattcattttagaacaattttgttttg 366  Q
    ||||| || ||||||| ||||| ||| |||||||||||||| ||||||||| |||||    
T  52848167 aattattattgcattggaaattgaaagtgacattcattttaaaacaatttttttttg 52848223  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 307 - 365
Target Start/End: Complemental strand, 32414774 - 32414716
Alignment:
Q  307 agtaattaatagtgcattgaaaattaaaattgacattcattttagaacaattttgtttt 365  Q
    ||||||||||||||||||| ||| ||||| |||||||||||||  ||||||||| ||||    
T  32414774 agtaattaatagtgcattggaaactaaaaatgacattcattttgaaacaattttttttt 32414716  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 383
Target Start/End: Complemental strand, 7612530 - 7612469
Alignment:
Q  322 attgaaaattaaaattgacattcattttagaacaattttgttttgtaaaaggtacactcatt 383  Q
    |||||||||  ||| |||||||||||||| ||||||||| |||||| ||||  |||||||||    
T  7612530 attgaaaatgtaaagtgacattcattttaaaacaatttttttttgttaaagtgacactcatt 7612469  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 307 - 360
Target Start/End: Original strand, 34035853 - 34035906
Alignment:
Q  307 agtaattaatagtgcattgaaaattaaaattgacattcattttagaacaatttt 360  Q
    ||||||||||||||||||||||| | ||| |||||||||||||| || ||||||    
T  34035853 agtaattaatagtgcattgaaaactgaaagtgacattcattttaaaataatttt 34035906  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 360
Target Start/End: Complemental strand, 10195609 - 10195568
Alignment:
Q  319 tgcattgaaaattaaaattgacattcattttagaacaatttt 360  Q
    ||||||||||||||||| | |||||||||||| |||||||||    
T  10195609 tgcattgaaaattaaaagtaacattcattttaaaacaatttt 10195568  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 360
Target Start/End: Complemental strand, 29411731 - 29411690
Alignment:
Q  319 tgcattgaaaattaaaattgacattcattttagaacaatttt 360  Q
    ||||||||||| ||||| |||||||||||||| |||||||||    
T  29411731 tgcattgaaaactaaaagtgacattcattttaaaacaatttt 29411690  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 319 - 383
Target Start/End: Complemental strand, 17703054 - 17702990
Alignment:
Q  319 tgcattgaaaattaaaattgacattcattttagaacaattttgttttgtaaaaggtacactcatt 383  Q
    ||||||||||||| ||| |||||||||||||| ||||| ||  |||||| ||||  |||||||||    
T  17703054 tgcattgaaaattgaaagtgacattcattttaaaacaaattatttttgttaaagcgacactcatt 17702990  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 308 - 360
Target Start/End: Original strand, 15776585 - 15776637
Alignment:
Q  308 gtaattaatagtgcattgaaaattaaaattgacattcattttagaacaatttt 360  Q
    |||||||||| ||||||| |||| |||| |||||||||||||| |||||||||    
T  15776585 gtaattaatattgcattggaaatcaaaagtgacattcattttaaaacaatttt 15776637  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 360
Target Start/End: Complemental strand, 26660790 - 26660749
Alignment:
Q  319 tgcattgaaaattaaaattgacattcattttagaacaatttt 360  Q
    ||||||||||||| ||| |||||||||||||| |||||||||    
T  26660790 tgcattgaaaattgaaagtgacattcattttaaaacaatttt 26660749  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 360
Target Start/End: Complemental strand, 26932383 - 26932342
Alignment:
Q  319 tgcattgaaaattaaaattgacattcattttagaacaatttt 360  Q
    ||||||||||||| ||| |||||||||||||| |||||||||    
T  26932383 tgcattgaaaattgaaagtgacattcattttaaaacaatttt 26932342  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 307 - 383
Target Start/End: Complemental strand, 42940016 - 42939940
Alignment:
Q  307 agtaattaatagtgcattgaaaattaaaattgacattcattttagaacaattttgttttgtaaaaggtacactcatt 383  Q
    ||||||||||||||||||||||| | ||| |||||||||||||  ||||| ||  |||||| ||||  |||||||||    
T  42940016 agtaattaatagtgcattgaaaaatgaaaatgacattcattttgaaacaaattatttttgttaaagcgacactcatt 42939940  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 366
Target Start/End: Original strand, 53200795 - 53200842
Alignment:
Q  319 tgcattgaaaattaaaattgacattcattttagaacaattttgttttg 366  Q
    ||||||||||| ||||| |||||||||||||| ||||||||| |||||    
T  53200795 tgcattgaaaactaaaagtgacattcattttaaaacaatttttttttg 53200842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 319 - 365
Target Start/End: Complemental strand, 47137998 - 47137952
Alignment:
Q  319 tgcattgaaaattaaaattgacattcattttagaacaattttgtttt 365  Q
    ||||||||||| ||||| |||||||||||||| ||||||||| ||||    
T  47137998 tgcattgaaaactaaaaatgacattcattttaaaacaattttttttt 47137952  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 356
Target Start/End: Original strand, 51058255 - 51058304
Alignment:
Q  307 agtaattaatagtgcattgaaaattaaaattgacattcattttagaacaa 356  Q
    ||||||||| ||||||||||||| | ||| |||||||||||||| |||||    
T  51058255 agtaattaaaagtgcattgaaaacttaaagtgacattcattttaaaacaa 51058304  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 307 - 355
Target Start/End: Complemental strand, 49877203 - 49877155
Alignment:
Q  307 agtaattaatagtgcattgaaaattaaaattgacattcattttagaaca 355  Q
    ||||||||||||| ||||||||| |||||  ||||||||||||| ||||    
T  49877203 agtaattaatagtacattgaaaactaaaagcgacattcattttaaaaca 49877155  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 319 - 383
Target Start/End: Original strand, 50038286 - 50038350
Alignment:
Q  319 tgcattgaaaattaaaattgacattcattttagaacaattttgttttgtaaaaggtacactcatt 383  Q
    ||||||||||| | ||| |||||||||||||| ||||||||| |||||  ||||  |||||||||    
T  50038286 tgcattgaaaactgaaagtgacattcattttaaaacaatttttttttgctaaagcgacactcatt 50038350  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 319 - 383
Target Start/End: Complemental strand, 9940683 - 9940619
Alignment:
Q  319 tgcattgaaaattaaaattgacattcattttagaacaattttgttttgtaaaaggtacactcatt 383  Q
    ||||||||||| | ||| ||||| |||||||| ||||||||| |||||| ||||  |||||||||    
T  9940683 tgcattgaaaactgaaagtgacaatcattttaaaacaatttttttttgttaaagcgacactcatt 9940619  T

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