View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2687_low_23 (Length: 528)
Name: NF2687_low_23
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2687_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 104; Significance: 1e-51; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 197 - 333
Target Start/End: Original strand, 46282761 - 46282897
Alignment:
| Q |
197 |
gagcatagttcagttgataacgacatgcattattatatagaggtcggggtttgaactcccaacaccgcacttatttatcttnnnnnnntgtgaattctat |
296 |
Q |
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| T |
46282761 |
gagcatagttcagttggtaaggacatgcattattatatagaggtcggggtttgaactcccaacaccgcacttattcatcttaaaaaaatgtgaattctat |
46282860 |
T |
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| Q |
297 |
ctactaagttattaaaaataaaaattgatctacgcac |
333 |
Q |
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| T |
46282861 |
ctactaagttattaaaaataaaaattgatctacgcac |
46282897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 403 - 528
Target Start/End: Original strand, 46282968 - 46283099
Alignment:
| Q |
403 |
ggatttctgttcactcagtcgagtataaatatcagcatcgtgactcaaacattgactcaaacactgaaagaacaaaacaacaaaacagaaaag------a |
496 |
Q |
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| T |
46282968 |
ggatttctgttcactcagtcgagtataaatatcagcatcgtgactcaaacattgacacaaacactgaaagaacaaaacaacaaaacagaaaagagaaaaa |
46283067 |
T |
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| Q |
497 |
gaatcatgggtggtgcgattacagaaaaccta |
528 |
Q |
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| T |
46283068 |
gaatcatgggtggtgcgattccagaaaaccta |
46283099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 26 - 126
Target Start/End: Original strand, 46282595 - 46282690
Alignment:
| Q |
26 |
cttacaaacaatattcaaaaacttaagaaactaaaaggaacaagacagctcaatcccacacatgattgttttgttcttcacatgattgttgagtatatca |
125 |
Q |
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| T |
46282595 |
cttacaaacaatattcaaaaacttaagaaactaaaaggaaca-----gctcaatcccacacatgattgttttgttcttcacatgattgttgagtatatca |
46282689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 235 - 277
Target Start/End: Original strand, 29869286 - 29869328
Alignment:
| Q |
235 |
agaggtcggggtttgaactcccaacaccgcacttatttatctt |
277 |
Q |
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| T |
29869286 |
agaggtcggggtttgaactccaaactccccacttatttatctt |
29869328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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