View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2687_low_25 (Length: 494)
Name: NF2687_low_25
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2687_low_25 |
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| [»] scaffold0129 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 1 - 475
Target Start/End: Complemental strand, 16503749 - 16503275
Alignment:
| Q |
1 |
aaagtgactgctaatgatgaaatcataatgcgaatcatttctcagcatggaattaatgtaaaatcttaactaaactaactgatatatagattataataat |
100 |
Q |
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| T |
16503749 |
aaagtgactgctaatgatgaaatcataatacgaatcatttctcagcatggaattaatataaaatcttaactaaactaactgatatatagattataataat |
16503650 |
T |
|
| Q |
101 |
aacatccatactctgtttaaattaactcaaatttatgtgtatcagcctggaaatgatgaagaagctgactatattgaagttgtatctaagctgctagata |
200 |
Q |
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| T |
16503649 |
aacatccatactctgtttatataaactcaaatttatgtgcatcagcctggaaatgatgaagaagctgactatattgaagttgtatctaagctgctagata |
16503550 |
T |
|
| Q |
201 |
gccatcctttggtatagttatatgttattatgcattcttcttttaatcttaatatgtatccttcttagctaatacgaaattaattcatgctatgaaatga |
300 |
Q |
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| T |
16503549 |
gccatcctttggtatagttatatgttattatgcattcttcttttaatcttaatatgtatccttcttagctaatacggaattaattcatgatatgaaatga |
16503450 |
T |
|
| Q |
301 |
ttattcaatattaggatgtgagtgaaggcgctgagtcaaacaacaaggatgatagtatggtggctaaatcggtgttgactctgactaacaagggattggg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||| |
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| T |
16503449 |
ttattcaatattaggatgtgagtgaaggcgctgagtcaaacaacaaggatgatagtatggtggctaaatcggtgctgacaccgactaacaagggattggg |
16503350 |
T |
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| Q |
401 |
aaagagaggttctgaatatgttgaatcattggatgatattgttactgctgaaggcgacacatctaccactaagga |
475 |
Q |
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| T |
16503349 |
aaagagaggttctgaatatgttgaatcattggatgatattgttactgctgaaggcgacacatctaccactaagga |
16503275 |
T |
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Target: scaffold0129 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0129
Description:
Target: scaffold0129; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 472
Target Start/End: Original strand, 29896 - 29993
Alignment:
| Q |
375 |
ttgactctgactaacaagggattgggaaagagaggttctgaatatgttgaatcattggatgatattgttactgctgaaggcgacacatctaccactaa |
472 |
Q |
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||||||| |||||||| ||||| || |||||||||||||||| ||| ||| || |||||||| ||| ||||||||| ||| |||| |||||||| |
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| T |
29896 |
ttgactccaactaacaaaggattaggcaagagaggttctgaatttgtggaaacagtggatgatcttgaacttgctgaaggtgacgcatcaaccactaa |
29993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 313 - 469
Target Start/End: Complemental strand, 21675259 - 21675103
Alignment:
| Q |
313 |
aggatgtgagtgaaggcgctgagtcaaacaacaaggatgatagtatggtggctaaatcggtgttgactctgactaacaagggattgggaaagagaggttc |
412 |
Q |
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||||||| || ||||| ||| ||| |||| ||||||||| | ||||| ||| || | |||||||||| ||| | |||| | |||||||||||| || | |
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| T |
21675259 |
aggatgttagcgaaggtactgggtccaacagcaaggatgaaaccatggttgctgaaccagtgttgactccgacaagcaagagtttgggaaagagatgtgc |
21675160 |
T |
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| Q |
413 |
tgaatatgttgaatcattggatgatattgttactgctgaaggcgacacatctaccac |
469 |
Q |
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||| |||| || ||||||||||| |||||| |||||| || || |||||||||| |
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| T |
21675159 |
tgagcatgtagattcattggatgaaattgttcttgctgatggtgatgcatctaccac |
21675103 |
T |
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