View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2687_low_26 (Length: 485)

Name: NF2687_low_26
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2687_low_26
NF2687_low_26
[»] chr6 (2 HSPs)
chr6 (17-475)||(2923672-2924130)
chr6 (40-88)||(7043044-7043094)
[»] chr5 (1 HSPs)
chr5 (398-466)||(464023-464091)
[»] chr2 (2 HSPs)
chr2 (400-462)||(28598783-28598845)
chr2 (408-458)||(40369627-40369677)
[»] chr7 (3 HSPs)
chr7 (400-448)||(29917078-29917126)
chr7 (384-429)||(20918849-20918894)
chr7 (418-458)||(17056388-17056428)
[»] chr1 (1 HSPs)
chr1 (418-462)||(22191023-22191067)
[»] chr3 (1 HSPs)
chr3 (418-458)||(44888763-44888803)


Alignment Details
Target: chr6 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 17 - 475
Target Start/End: Complemental strand, 2924130 - 2923672
Alignment:
Q  17 agctacaagtaaaacctacaatcagaagctataagcaaaaacataagctataagaaaaacctataagtagaatctataagcnnnnnnnnnnnnntaatgg 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             ||||||    
T  2924130 agctacaagtaaaacctacaatcagaagctataagcaaaaacataagctataagaaaaacctataagtagaatctataagcaaaaacaaaaaaataatgg 2924031  T
Q  117 aaaagttgtgctttagggtggaaatttggaggatcgaattattggatatcaacaattccccataaaatacacaacagccaaaatatgaattctaacaann 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||      
T  2924030 aaaagttgtgctttagggtggaaatttggaggatcgaattattggatatcaacaattccccataaaatacacaacagtcaaaatatgaattctaacaatt 2923931  T
Q  217 nnnnnnattcaaaaatgcattttttacatgagtatggaattctatatctttatttagaactaccagcaagaaagaaaaaataataattctatatagtatc 316  Q
          |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2923930 ttttttattcaaaaatgcattttttacatgagaatggaattctatatctttatttagaactaccagcaagaaagaaaaaataataattctatatagtatc 2923831  T
Q  317 aacactgtggtactattaataattccagatgacaaattctatttggtccactagaattccgtgaataaaatagattatttgagtggaagagtaaatttct 416  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2923830 aacactgtggtactattaataattccagatgacaaattctatttcgtccactagaattccgtgaataaaatagattatttgagtggaagagtaaatttct 2923731  T
Q  417 ttcttttggtggtcgcctggttctcctaaagtctgccttgtcttctttgtttgcctatg 475  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  2923730 ttcttttggtggtcgcctggttctcctaaagtctgccttgtcttccttgtttgtctatg 2923672  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 7043044 - 7043094
Alignment:
Q  40 agaagctataagcaaaaacataa--gctataagaaaaacctataagtagaa 88  Q
    |||||||||||||||||| | ||  ||||||||||||||||||||||||||    
T  7043044 agaagctataagcaaaaaaaaaaaggctataagaaaaacctataagtagaa 7043094  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 398 - 466
Target Start/End: Original strand, 464023 - 464091
Alignment:
Q  398 agtggaagagtaaatttctttcttttggtggtcgcctggttctcctaaagtctgccttgtcttctttgt 466  Q
    |||||||| ||| |||| ||||||||||||||||||||||||||| ||||||||  |||||||| ||||    
T  464023 agtggaagtgtagatttatttcttttggtggtcgcctggttctccaaaagtctgtattgtcttccttgt 464091  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 400 - 462
Target Start/End: Complemental strand, 28598845 - 28598783
Alignment:
Q  400 tggaagagtaaatttctttcttttggtggtcgcctggttctcctaaagtctgccttgtcttct 462  Q
    |||||||||||||||||||||||||  ||| |  ||||| |||||||||||| ||||||||||    
T  28598845 tggaagagtaaatttctttcttttgacggttgtatggttatcctaaagtctgtcttgtcttct 28598783  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 408 - 458
Target Start/End: Complemental strand, 40369677 - 40369627
Alignment:
Q  408 taaatttctttcttttggtggtcgcctggttctcctaaagtctgccttgtc 458  Q
    |||||||||||||||||||||||| |||||||| || || |||| ||||||    
T  40369677 taaatttctttcttttggtggtcgtctggttcttctgaaatctgtcttgtc 40369627  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 400 - 448
Target Start/End: Complemental strand, 29917126 - 29917078
Alignment:
Q  400 tggaagagtaaatttctttcttttggtggtcgcctggttctcctaaagt 448  Q
    |||||||||| ||||||||||||||||||| | || |||||||||||||    
T  29917126 tggaagagtagatttctttcttttggtggttgtctagttctcctaaagt 29917078  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 429
Target Start/End: Complemental strand, 20918894 - 20918849
Alignment:
Q  384 aaatagattatttgagtggaagagtaaatttctttcttttggtggt 429  Q
    ||||||||| |||| ||||||||||  |||||||||||||||||||    
T  20918894 aaatagattgtttgggtggaagagttgatttctttcttttggtggt 20918849  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 418 - 458
Target Start/End: Complemental strand, 17056428 - 17056388
Alignment:
Q  418 tcttttggtggtcgcctggttctcctaaagtctgccttgtc 458  Q
    |||||||||||||| ||||||||||| ||||||| ||||||    
T  17056428 tcttttggtggtcgtctggttctccttaagtctgtcttgtc 17056388  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 418 - 462
Target Start/End: Original strand, 22191023 - 22191067
Alignment:
Q  418 tcttttggtggtcgcctggttctcctaaagtctgccttgtcttct 462  Q
    |||||||||||||| ||||||||||| ||||||| ||||||||||    
T  22191023 tcttttggtggtcgtctggttctccttaagtctgtcttgtcttct 22191067  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 418 - 458
Target Start/End: Complemental strand, 44888803 - 44888763
Alignment:
Q  418 tcttttggtggtcgcctggttctcctaaagtctgccttgtc 458  Q
    |||||||||||||| ||||||||||| ||||||| ||||||    
T  44888803 tcttttggtggtcgtctggttctccttaagtctgtcttgtc 44888763  T

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