View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2687_low_28 (Length: 473)
Name: NF2687_low_28
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2687_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 1e-91; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 28 - 249
Target Start/End: Original strand, 38295273 - 38295503
Alignment:
| Q |
28 |
tcgaaactattgtacaaaataacttctaaaa---------ccgaaatataatcaaacaaacccttgcaaaatgtaatgtcctggctgcgggtaattaaaa |
118 |
Q |
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| T |
38295273 |
tcgaaactattgtacaaaataacttctaaaaactcaaaaaccgaaatataatcaaacaaacccttgcaacatgtaatgtcctggctgcgggtaattacaa |
38295372 |
T |
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| Q |
119 |
tgtgtgtagttacccgtccattgtgagtattttttaaagatgcatattgattgaacttggatctaattgtcatctctatatatgaattagatgtacttaa |
218 |
Q |
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| T |
38295373 |
tgtgtgtagttacccgtccattgtgaatattttttaaagatgcatattgattgaatttggatctaattgtcatccctatatatgaattagatgcacttaa |
38295472 |
T |
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| Q |
219 |
caagtaacaacgatgtacatattgttccctc |
249 |
Q |
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| T |
38295473 |
caagtaacaacgatgtatatattgttccctc |
38295503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 319 - 458
Target Start/End: Original strand, 38295567 - 38295706
Alignment:
| Q |
319 |
cttacacgtattttccaggatttatgtgaattttaacccaatgatcannnnnnnnnnnnattgaatcaatggcaggctgaatctttttgaattccccttt |
418 |
Q |
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| T |
38295567 |
cttacacgtattttccaggatttatgtgaattttaacccaatgatcatttttgttttttattgaatcaatggcaggctgaatctttttgaattccccttt |
38295666 |
T |
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| Q |
419 |
tccttgttgatcaacaataatggcatttctaacatgattt |
458 |
Q |
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| T |
38295667 |
tccttgttgatcaacaataatggcatttctaacatgattt |
38295706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 319 - 458
Target Start/End: Original strand, 38302855 - 38302994
Alignment:
| Q |
319 |
cttacacgtattttccaggatttatgtgaattttaacccaatgatcannnnnnnnnnnnattgaatcaatggcaggctgaatctttttgaattccccttt |
418 |
Q |
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| T |
38302855 |
cttacacgtattttccaggatttatgtgaattttaacccaatgatcatttttgttttttattgaatcaatggcaggctgaatcattttgaatgcccccct |
38302954 |
T |
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| Q |
419 |
tccttgttgatcaacaataatggcatttctaacatgattt |
458 |
Q |
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| T |
38302955 |
tccttgttgatcaacaataatggtatttgtaacatgattt |
38302994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 319 - 458
Target Start/End: Original strand, 38307066 - 38307205
Alignment:
| Q |
319 |
cttacacgtattttccaggatttatgtgaattttaacccaatgatcannnnnnnnnnnnattgaatcaatggcaggctgaatctttttgaattccccttt |
418 |
Q |
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| T |
38307066 |
cttacacatattttccaggatttatgtgaatcttaacccactgattattgttattcactattgaatcaatggcatgttgaatcattttgaatgctcctct |
38307165 |
T |
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| Q |
419 |
tccttgttgatcaacaataatggcatttctaacatgattt |
458 |
Q |
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| T |
38307166 |
tccttgttgatcaacaacaatgatatttgtaacatgattt |
38307205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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