View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2687_low_3 (Length: 797)
Name: NF2687_low_3
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2687_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 622; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 622; E-Value: 0
Query Start/End: Original strand, 8 - 779
Target Start/End: Original strand, 27156260 - 27157036
Alignment:
| Q |
8 |
gtcgaagaatatggaaatttcttgaaatacctcactaagattatccattaccatgatactactaaccgacgaccctaaattgtgcttttgtgtatgatga |
107 |
Q |
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|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27156260 |
gtcgaaaattatggaaatttcttgaaatacctcactaagattatccattaccatgatactactaaccgacgaccctaaattgtgcttttgtgtatgatga |
27156359 |
T |
|
| Q |
108 |
tgtatacatttctacaaaaggaaaaggattaactaagacatcgtcactagttataggtcacattaaaatcttgattgatatatatcggcctataaataga |
207 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27156360 |
tgtatacatttctaaaaaaggaaaaggattaactaagacatcgtcactagttataggtcacattaaaatcttgattgatatatatcggcctataaataga |
27156459 |
T |
|
| Q |
208 |
ccaggcaattctctccnnnnnnnnnnnnnnn-tagaccaggcaattatttccttccctgtgtatacaattaattatggatatacacaaccaatttcatgg |
306 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27156460 |
ccaggcaattctctccaaaaaaaaaaaaaaaatagaccaggcaattatttccttccctgtgtatacaattaattatggatatacacaaccaatttcatgg |
27156559 |
T |
|
| Q |
307 |
tttcgatgaacttgaaagccatttaaattaattgaatttctgaaaaaagactaatttaattaagtaatattggtgattgtcttcgtgagcttaact---- |
402 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| || |
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| T |
27156560 |
tttcgatgaacttgaaaaccatttaaattaattgaatttctgaaaaaagactaatttaattaagtaattttgatgattgtcttcgtgagcttagctcagt |
27156659 |
T |
|
| Q |
403 |
tggtaaaaatcaaatttaatttttattttactttcgaaaactaaacaggtttccgtatcccatggttaccaattaaattgaatgaatcttcaagtagtta |
502 |
Q |
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|| ||||||| |||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
27156660 |
tgctaaaaattaaatttgatttttatttcactttcgaaaactaatcaggtttccgtatcccatggttaccaattaaattgaatgaatcttcaggtagtta |
27156759 |
T |
|
| Q |
503 |
acgagtttggcgttaaaaacaaattagtctgaaagatctacatccaaatcttaactgaattaataatattttattcaatggatcttgttaacgattgcct |
602 |
Q |
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| T |
27156760 |
acgagtttggcgttaaaaacaaattagtctgaaagatctacatccaaatcttaactgaattaataatattttattcaatggatcttgttaacgattgcct |
27156859 |
T |
|
| Q |
603 |
taagggcctatacattaaaaaagtctaatgattcaatttttgatgtatcaaatgcacaannnnnnnataaaaactatactatataaacttcttaaaaaat |
702 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
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| T |
27156860 |
taagggcctatccattaaaaaagtctaatgattcaatttttgatgtatcaaatgcacaaattttttataaaaactatactatctaaacttcttaaaaaat |
27156959 |
T |
|
| Q |
703 |
gctcttaaggcactcattaacgtttccgttacataattgatggataatgcgagtgttgtaaattctaatgtatgcac |
779 |
Q |
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| T |
27156960 |
gctcttaaagcactcattaacgtttccgttacataattgatggataatgcgagtgttgtaaattctaatgtatgcac |
27157036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 409 - 650
Target Start/End: Original strand, 27146522 - 27146761
Alignment:
| Q |
409 |
aaatcaaatttaatttttattttactttcgaaaactaaacaggtttccgtatcccatggttaccaattaaattgaatgaatcttcaagtagttaacgagt |
508 |
Q |
| |
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||||||||||| |||||||||| || |||||| ||||| |||||||| |||||||||||||||| ||||||||||||||||| ||||||||| | |||| |
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| T |
27146522 |
aaatcaaatttgatttttatttcacattcgaagactaat-aggtttccttatcccatggttaccagttaaattgaatgaatctgcaagtagttgatgagt |
27146620 |
T |
|
| Q |
509 |
ttggcgttaaaaacaaattagtctgaaagatctacatccaaatcttaactgaattaataatattttattcaatggatcttgttaacgattgccttaaggg |
608 |
Q |
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|||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||| | ||||||||||| ||||| ||| |||| | |
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| T |
27146621 |
ttggtgttaaaaacaaattagtc-aaaagatctacatccaaatcttaattgaattaataatactttacttaatggatcttgctaacggttgttttaactg |
27146719 |
T |
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| Q |
609 |
cctatacattaaaaaagtctaatgattcaatttttgatgtat |
650 |
Q |
| |
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|||| |||| || | |||||||| |||||||| ||| |||| |
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| T |
27146720 |
actattcattgaatatgtctaatgcttcaatttctgaagtat |
27146761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 17 - 177
Target Start/End: Complemental strand, 29195608 - 29195448
Alignment:
| Q |
17 |
tatggaaatttcttgaaatacctcactaagattatccattaccatgatacta--ctaaccgac-gaccctaaattgtgcttttgtgt-atgatgatgtat |
112 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||| || ||||||||| ||||||||| | ||||||||||| | ||||||| |||||||||||| |
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| T |
29195608 |
tatggaaatttcttgaaatacctcacaaagattatccacaactatgatactatgctaaccgacagcccctaaattgtacgtttgtgtaatgatgatgtat |
29195509 |
T |
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| Q |
113 |
acatttctacaaaaggaaaaggattaactaagacatcgtcactagttataggtcacattaaaatc |
177 |
Q |
| |
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||||||||| ||| |||| | || |||||||| ||||||||||||||||| |||| ||||| |
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| T |
29195508 |
acatttctaaaaatggaa----gtaaagtaagacattgtcactagttataggtctcattcaaatc |
29195448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 422 - 570
Target Start/End: Original strand, 27215751 - 27215894
Alignment:
| Q |
422 |
tttttattttactttcgaaaactaaacaggtttccgtatcccatggttaccaattaaattgaatgaatcttcaagtagttaacgagtttggcgttaaaaa |
521 |
Q |
| |
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||||||||| |||||| || |||||||||||||| ||| |||||||| ||||||||| |||||| ||||| ||||| |||||| | |||| ||| |
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| T |
27215751 |
tttttatttcactttcaaagactaaacaggtttctttatttcatggttatcaattaaat----ggaatctgcaagtggttaatgagtttagtgttagaaa |
27215846 |
T |
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| Q |
522 |
caaattagtctgaaagatctacatccaaatcttaactgaattaataata |
570 |
Q |
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|||||||||| |||| ||| | ||||||||||||||||||||||||||| |
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| T |
27215847 |
caaattagtcggaaatatc-aaatccaaatcttaactgaattaataata |
27215894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 497 - 555
Target Start/End: Original strand, 27165035 - 27165091
Alignment:
| Q |
497 |
tagttaacgagtttggcgttaaaaacaaattagtctgaaagatctacatccaaatctta |
555 |
Q |
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||||||| |||||| |||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
27165035 |
tagttaatgagttttgcgttaaaaacaaattag--tgaaagatcaacatccaaatctta |
27165091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 538 - 577
Target Start/End: Original strand, 27162368 - 27162407
Alignment:
| Q |
538 |
atctacatccaaatcttaactgaattaataatattttatt |
577 |
Q |
| |
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|||||||||||||||||||| |||||||||||| |||||| |
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| T |
27162368 |
atctacatccaaatcttaacagaattaataatactttatt |
27162407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 500 - 545
Target Start/End: Original strand, 27162184 - 27162229
Alignment:
| Q |
500 |
ttaacgagtttggcgttaaaaacaaattagtctgaaagatctacat |
545 |
Q |
| |
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|||| ||||||||||||||||||||||||||| |||| || ||||| |
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| T |
27162184 |
ttaatgagtttggcgttaaaaacaaattagtcggaaatatatacat |
27162229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 417 - 454
Target Start/End: Original strand, 27164094 - 27164131
Alignment:
| Q |
417 |
tttaatttttattttactttcgaaaactaaacaggttt |
454 |
Q |
| |
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|||||||||||||||||||| ||||| ||||||||||| |
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| T |
27164094 |
tttaatttttattttacttttgaaaattaaacaggttt |
27164131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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