View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2687_low_30 (Length: 446)
Name: NF2687_low_30
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2687_low_30 |
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| [»] scaffold0543 (1 HSPs) |
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| [»] scaffold0492 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 20 - 435
Target Start/End: Original strand, 39076213 - 39076628
Alignment:
| Q |
20 |
caatacggatggattacaagaaaccatttgaaaagctatattatctctctatggatgcaaactgtggttaaaatttgtgatgtagattatcttagatcat |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39076213 |
caatacggatggattacaagaaaccatttgaaaagctatattatctctctatggatgcaaactgtggttaaaatttgtgatgtagattatcttagatcat |
39076312 |
T |
|
| Q |
120 |
tcatcatgctctttcttttgtgttgttttcagaagtttatcatatcagttaatgatattagtctgcttatgatattctgtgttgttaattcttaactatc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39076313 |
tcatcatgctctttcttttgtgttgttttcagaagtttatcatatcagttaatgatattagtctgcttatgatattctgtgttgttaattcttaactatc |
39076412 |
T |
|
| Q |
220 |
atctcctgcccctgaannnnnnncaggaacctgtgaagaccaagcatccacaacttcactatgaatcaaaattgtatatgcttcttcaaggaggaagtaa |
319 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39076413 |
atctcctgcccctgaatttttttcaggaacctgtgaagaccaagcatccacaacttcactatgaatcaaaattgtatatgcttcttcaaggaggaagtaa |
39076512 |
T |
|
| Q |
320 |
gtcaatgttgctatttctctttaccgatttcagtagtgaaaagtataactaattgccaatgctagagtttcacatggaaatggtttctccattatttgta |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39076513 |
gtcaatgttgctatttctctttaccgatttcagtagtgaaaagtataactaattgccaatgctagagtttcacatggaaatggtttctccattatttgta |
39076612 |
T |
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| Q |
420 |
cgtgtgcgtgtttctt |
435 |
Q |
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| T |
39076613 |
cgtgtgcgtgtttctt |
39076628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 243 - 315
Target Start/End: Complemental strand, 30379811 - 30379739
Alignment:
| Q |
243 |
caggaacctgtgaagaccaagcatccacaacttcactatgaatcaaaattgtatatgcttcttcaaggaggaa |
315 |
Q |
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|||||| |||||||||||| ||||||||| ||||||||||| |||||| |||||||||||||||||||||||| |
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| T |
30379811 |
caggaatctgtgaagaccaggcatccacagcttcactatgagtcaaaactgtatatgcttcttcaaggaggaa |
30379739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 243 - 321
Target Start/End: Original strand, 15793867 - 15793945
Alignment:
| Q |
243 |
caggaacctgtgaagaccaagcatccacaacttcactatgaatcaaaattgtatatgcttcttcaaggaggaagtaagt |
321 |
Q |
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||||||||||||||||| |||||||| ||||||| || || || |||||||||||||||||||||||||||||||||| |
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| T |
15793867 |
caggaacctgtgaagacaaagcatcctcaacttctgtacgagtccaaattgtatatgcttcttcaaggaggaagtaagt |
15793945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 243 - 321
Target Start/End: Complemental strand, 33628242 - 33628164
Alignment:
| Q |
243 |
caggaacctgtgaagaccaagcatccacaacttcactatgaatcaaaattgtatatgcttcttcaaggaggaagtaagt |
321 |
Q |
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|||||||||| |||||||| ||||| |||||||||||||| ||||||||||| |||||||||||||| |||||||||| |
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| T |
33628242 |
caggaacctgcaaagaccaaacatcctcaacttcactatgagtcaaaattgtacatgcttcttcaagggggaagtaagt |
33628164 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0543 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0543
Description:
Target: scaffold0543; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 243 - 321
Target Start/End: Original strand, 6735 - 6813
Alignment:
| Q |
243 |
caggaacctgtgaagaccaagcatccacaacttcactatgaatcaaaattgtatatgcttcttcaaggaggaagtaagt |
321 |
Q |
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||||||| ||||||||| ||| |||| || |||| ||||| || |||||||| | |||||| |||||||||||||||| |
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| T |
6735 |
caggaacatgtgaagacaaagtatcctcagcttctgtatgagtctaaattgtacaggcttctgcaaggaggaagtaagt |
6813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0492 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0492
Description:
Target: scaffold0492; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 243 - 321
Target Start/End: Original strand, 8280 - 8358
Alignment:
| Q |
243 |
caggaacctgtgaagaccaagcatccacaacttcactatgaatcaaaattgtatatgcttcttcaaggaggaagtaagt |
321 |
Q |
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||||||| ||||||||| ||| |||| || |||| ||||| || |||||||| | |||||| |||||||||||||||| |
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| T |
8280 |
caggaacatgtgaagacaaagtatcctcagcttctgtatgagtctaaattgtacaggcttctgcaaggaggaagtaagt |
8358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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