View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2687_low_32 (Length: 433)
Name: NF2687_low_32
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2687_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 143 - 415
Target Start/End: Complemental strand, 51034821 - 51034547
Alignment:
| Q |
143 |
gcaggatgtgaacataagaagagtagagaatgggactgcatttctatgatggtgagagtaactaaattgtaaggataataacnnnnnnncagtagtctaa |
242 |
Q |
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| T |
51034821 |
gcaggatgtgaacataagaagagtagagaatgggactgcatttctgtgatggtgagagtaactaaattgtaaggataataacaaaaaaa-agtagtctaa |
51034723 |
T |
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| Q |
243 |
aggtattacttttatttcatgatcattgctttgttttgaccttta---ccatctattataattattgttgacgtacttttgttctattatagcagttgat |
339 |
Q |
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| T |
51034722 |
aggtattacttttatttcatgatcattgctttgttttgacctttattaccatcaattataattattgttgacgtacttttgttctattatagcagttgat |
51034623 |
T |
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| Q |
340 |
tttctctataagtaagggagaaaaaatctctaaaaataagaggaaaattataattcttactgatttgagccaatgt |
415 |
Q |
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| T |
51034622 |
tttctctataagtaagggagaaaaaatctctaaaaataagaggaaaattataattcttactgatttgagccaatgt |
51034547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 51034964 - 51034926
Alignment:
| Q |
1 |
tttcattcccctttt-gttcttcttctctgcctgcatct |
38 |
Q |
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| T |
51034964 |
tttcattcccctttttgttcttcttctctgcctgcatct |
51034926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 240 - 372
Target Start/End: Complemental strand, 10208115 - 10207985
Alignment:
| Q |
240 |
taaaggtattacttttatttcatgatcattgctttgttttgacc--tttaccatctattataattattgttgacgtacttttgttctattatagcagttg |
337 |
Q |
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| T |
10208115 |
taaaggtattactcttatttcatgatcattgctttgtcttgaccattttaccatctattatatttattgttcacgtactttttttc----ataccaattg |
10208020 |
T |
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| Q |
338 |
attttctctataagtaagggagaaaaaatctctaa |
372 |
Q |
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| T |
10208019 |
attttctcaataaggaagatcgaaaaaatctctaa |
10207985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 240 - 319
Target Start/End: Original strand, 48118720 - 48118801
Alignment:
| Q |
240 |
taaaggtattacttttatttcatgatcattgctttgttttgacc--tttaccatctattataattattgttgacgtactttt |
319 |
Q |
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| T |
48118720 |
taaaggtattactcttatttcatgatcattgctttatcttgaccattttaccatatattatatttattgttcacgtactttt |
48118801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 33357843 - 33357806
Alignment:
| Q |
1 |
tttcattccccttttgttcttcttctctgcctgcatct |
38 |
Q |
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| T |
33357843 |
tttcattcaccttttattcttcttctctgcctgcatct |
33357806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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