View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2687_low_33 (Length: 423)
Name: NF2687_low_33
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2687_low_33 |
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Alignment Details
Target: chr6 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 13 - 408
Target Start/End: Complemental strand, 5637105 - 5636710
Alignment:
| Q |
13 |
aatatacaacatctgcactttcagccatgacaatttgaacannnnnnnnncactaattttccaaatattcaagtatactagtgctacactataaacatct |
112 |
Q |
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| T |
5637105 |
aatatacaacatctgcactttcagccatgacaatttgaacatttttttttcactaattttccaaatattcaagtatactagtgctactctataaacatgt |
5637006 |
T |
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| Q |
113 |
aggatatttttcaaagcttgattttaaacaaagaaatactataaaggattatatcttacaacgaccaactactactagaaaatgaagaagttctaattag |
212 |
Q |
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| T |
5637005 |
aggatatttttcaaagcttgattttaaacaaaaaaatactataaaggattatatcttacaaagaccaactactactagaaaatgcagaagttctaattag |
5636906 |
T |
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| Q |
213 |
ataaattccctactaggaaagcttgcatttatgtagctactaagtcaaaaccgttggttgaagattgaatgttttatattttaagctcgataaagtattg |
312 |
Q |
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| T |
5636905 |
ataaattccctactaggaaagcttgcatttacgtagctactaagtcaaagccgttggttgaagattgaatgttttatattttaagctcgataaagtattg |
5636806 |
T |
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| Q |
313 |
tatgatcttcctccaacgattctgacttacagactgctacatgctttcgcaaagcgagattgacttattttattaactaccacacatgaatcaaat |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5636805 |
tatgatcttcctccaacgattctgacttacagactgctacatgctttcgcaaagcgagattgacttattttattaactaccacacatgaatcaaat |
5636710 |
T |
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