View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2687_low_34 (Length: 421)
Name: NF2687_low_34
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2687_low_34 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 12 - 421
Target Start/End: Complemental strand, 38772407 - 38771996
Alignment:
| Q |
12 |
ttgcatgatttggagagatagtgagagggcataactacaagttaaagtgatgagaaaataattaattcaatttttactaacaaaaattaaaatatccccg |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |
|
|
| T |
38772407 |
ttgcatgatttggagagatagtgagagggcataactacaagttaaagtgatgagaaaataatgaattcaatttttactaacaaaaattaaaatatccgcg |
38772308 |
T |
|
| Q |
112 |
gactttctgtaccccctttttggacaacatttttcatatgaacttgaaaatttagtagacacaagggggtgcgaaaattactgcttgattagttcatgac |
211 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
38772307 |
gactttctgtacccc-tttttggacaacatttttcatatgaacttgaaaatttagtagacacaagggggtgcgaaaattactgcttgattaggtcatgac |
38772209 |
T |
|
| Q |
212 |
aattgtctt-gtaaggaatatgggctgggccagcatatttagcctaccatctgtcccttaaggtcagtatctgatattgggaccaagcattccaatctac |
310 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38772208 |
aattgtctttgtaaggaatatgggctgggccagcatatttagcctaccatctggcccttaaagtcagtatctgatattgggaccaagcattccaatctac |
38772109 |
T |
|
| Q |
311 |
tatctccaccctccccaaagaacaaaaacccatatctgtttacat--ttttctctctcttcatagccacgtttatatcctacgttttaatttcatctctc |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38772108 |
tatctccaccctccccaaagaacaaaaacccatatctatttacatttttttttttctcttcatagccacgtttatatcctacgttttaatttcatctctc |
38772009 |
T |
|
| Q |
409 |
ttcctctttttct |
421 |
Q |
| |
|
||||||||||||| |
|
|
| T |
38772008 |
ttcctctttttct |
38771996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University