View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2687_low_38 (Length: 403)
Name: NF2687_low_38
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2687_low_38 |
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| [»] scaffold0006 (4 HSPs) |
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| [»] scaffold0069 (1 HSPs) |
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| [»] scaffold0783 (1 HSPs) |
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Alignment Details
Target: scaffold0006 (Bit Score: 240; Significance: 1e-133; HSPs: 4)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 19 - 306
Target Start/End: Complemental strand, 81912 - 81625
Alignment:
| Q |
19 |
ttaaacaaagagaatgaagcgctctgcaataaggcatgctgactcgtagtctttacgcttctttatctttgtcatgccgtttnnnnnnnncatcgaggat |
118 |
Q |
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| T |
81912 |
ttaaacaaagagaatgaagcgctctgcaataaggcatgctgtctcgtagtttttacgcttctttatctttgtcatgccgtttaaaaaaaacatcgaggat |
81813 |
T |
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| Q |
119 |
tgagaaagaaggttaacaaaggaatattcatcatcaaatgccttaataagtttaggaacttggtgaattggtcattttggctagccattaaactaagagg |
218 |
Q |
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| T |
81812 |
tgagaaagaaggttaacaaaggaatattcatcatcaaatgtcttaataagtttaggtacttggtgaattggtcattttggctagccattgaactaagagg |
81713 |
T |
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| Q |
219 |
aagaaggaccctcggcgtgtatgactaagatatctttctccaatccattctaagtcaacttactcaccaggttcttgtgttccgtgtg |
306 |
Q |
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| T |
81712 |
aagaaggaccctcggtgtgtatgactaagatatctttctccaatccattctaagtcaacttactcaccaggttcttgtgttccgtgtg |
81625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 109 - 299
Target Start/End: Complemental strand, 130338 - 130149
Alignment:
| Q |
109 |
catcgaggattgagaaagaaggttaacaaaggaatattcatcatcaaatgccttaataagtttaggaacttggtgaattggtcattttggctagccatta |
208 |
Q |
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| T |
130338 |
catcgaggattgagaaaaaaggttaacaaaggaatattcaccatcaaattcctcaataagtttaggtacttcgtgaaatggtca-tttggctagcccttg |
130240 |
T |
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| Q |
209 |
aactaagaggaagaaggaccctcggcgtgtatgactaagatatctttctccaatccattctaagtcaacttactcaccaggttcttgtgtt |
299 |
Q |
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| T |
130239 |
acctatgaggaagaaggaccattggcgtgtacgactaaaatatcattctccaatccattctcagtcaacctactaaccaggttcttgtgtt |
130149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 125 - 172
Target Start/End: Original strand, 79920 - 79967
Alignment:
| Q |
125 |
agaaggttaacaaaggaatattcatcatcaaatgccttaataagttta |
172 |
Q |
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| T |
79920 |
agaaggttcacaaaagaatattcaccatcaaatgcctcaataagttta |
79967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 115 - 197
Target Start/End: Original strand, 195113 - 195196
Alignment:
| Q |
115 |
ggattgagaaagaaggttaacaaaggaatattca-tcatcaaatgccttaataagtttaggaacttggtgaattggtcattttg |
197 |
Q |
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| T |
195113 |
ggattgagaaaaaaggctcacaaaggaataatcaatcatcaaatgcctcaataagtctaagaaccgagtgaattgatcattttg |
195196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0069 (Bit Score: 108; Significance: 4e-54; HSPs: 1)
Name: scaffold0069
Description:
Target: scaffold0069; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 76 - 207
Target Start/End: Complemental strand, 521 - 390
Alignment:
| Q |
76 |
cttctttatctttgtcatgccgtttnnnnnnnncatcgaggattgagaaagaaggttaacaaaggaatattcatcatcaaatgccttaataagtttagga |
175 |
Q |
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| T |
521 |
cttctttatctttgtcatgccgtttaaaaaaaacatcgaggattgagaaagaaggttaacaaaggaatattcatcatcaaatgccttaataagtttagga |
422 |
T |
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| Q |
176 |
acttggtgaattggtcattttggctagccatt |
207 |
Q |
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| T |
421 |
acttggtgaattggtcattttggctagccatt |
390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 107; Significance: 2e-53; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 109 - 299
Target Start/End: Complemental strand, 13601681 - 13601492
Alignment:
| Q |
109 |
catcgaggattgagaaagaaggttaacaaaggaatattcatcatcaaatgccttaataagtttaggaacttggtgaattggtcattttggctagccatta |
208 |
Q |
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||||||||||||||||| |||||||||||||||||||||| |||||||| ||| |||||||||||| |||| ||||| |||||| ||||||||||| || |
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| T |
13601681 |
catcgaggattgagaaaaaaggttaacaaaggaatattcaccatcaaattcctcaataagtttaggtacttcgtgaaatggtca-tttggctagcccttg |
13601583 |
T |
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| Q |
209 |
aactaagaggaagaaggaccctcggcgtgtatgactaagatatctttctccaatccattctaagtcaacttactcaccaggttcttgtgtt |
299 |
Q |
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| T |
13601582 |
acctatgaggaagaaggaccattggcgtgtacgactaaaatatcattctccaatccattctcagtcaacctactaaccaggttcttgtgtt |
13601492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 116 - 205
Target Start/End: Original strand, 13626906 - 13626995
Alignment:
| Q |
116 |
gattgagaaagaaggttaacaaaggaatattcatcatcaaatgccttaataagtttaggaacttggtgaattggtcattttggctagcca |
205 |
Q |
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|||| ||||||| || | ||||||||||| |||||||||||||||| ||||||| || ||| |||||||||||||||||||||||||| |
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| T |
13626906 |
gattaagaaagatggctcacaaaggaataatcatcatcaaatgcctcaataagtctaataacagggtgaattggtcattttggctagcca |
13626995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 92
Target Start/End: Original strand, 13486160 - 13486204
Alignment:
| Q |
48 |
taaggcatgctgactcgtagtctttacgcttctttatctttgtca |
92 |
Q |
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| T |
13486160 |
taaggcttgctgactcatagtctttacactactttatctttgtca |
13486204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0783 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: scaffold0783
Description:
Target: scaffold0783; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 219 - 306
Target Start/End: Complemental strand, 6211 - 6124
Alignment:
| Q |
219 |
aagaaggaccctcggcgtgtatgactaagatatctttctccaatccattctaagtcaacttactcaccaggttcttgtgttccgtgtg |
306 |
Q |
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| T |
6211 |
aagaaggaccctcggcgtgtatgattaagatacctttctccaatccattctaagtcaacttactcacgaggttcttgtgttccgtgtg |
6124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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