View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2687_low_39 (Length: 400)

Name: NF2687_low_39
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2687_low_39
NF2687_low_39
[»] chr3 (4 HSPs)
chr3 (1-385)||(11005475-11005859)
chr3 (15-385)||(11024064-11024434)
chr3 (12-385)||(11015049-11015422)
chr3 (78-384)||(47451524-47451836)
[»] chr4 (39 HSPs)
chr4 (97-368)||(48852825-48853099)
chr4 (97-343)||(45371717-45371963)
chr4 (78-356)||(48147337-48147621)
chr4 (25-234)||(49043739-49043948)
chr4 (77-281)||(48156052-48156262)
chr4 (25-346)||(45365791-45366118)
chr4 (78-163)||(7790432-7790517)
chr4 (97-260)||(50666561-50666733)
chr4 (97-199)||(49038521-49038623)
chr4 (78-234)||(49048179-49048334)
chr4 (97-154)||(48864396-48864453)
chr4 (236-357)||(49043977-49044098)
chr4 (97-292)||(37826633-37826840)
chr4 (106-349)||(48903118-48903364)
chr4 (97-163)||(7765994-7766060)
chr4 (97-163)||(7771747-7771813)
chr4 (176-278)||(43596153-43596255)
chr4 (97-162)||(7813830-7813895)
chr4 (97-163)||(7237386-7237452)
chr4 (97-163)||(7773468-7773534)
chr4 (97-163)||(7786816-7786882)
chr4 (97-163)||(7878735-7878801)
chr4 (236-342)||(48705170-48705276)
chr4 (97-162)||(7800990-7801055)
chr4 (97-154)||(7908663-7908720)
chr4 (101-154)||(45384539-45384592)
chr4 (106-167)||(48861636-48861697)
chr4 (97-158)||(48870917-48870978)
chr4 (97-158)||(48876221-48876282)
chr4 (97-158)||(48886603-48886664)
chr4 (240-346)||(7765802-7765908)
chr4 (105-153)||(50672860-50672908)
chr4 (168-207)||(7878048-7878087)
chr4 (101-140)||(48735058-48735097)
chr4 (196-271)||(48861505-48861580)
chr4 (97-162)||(7823322-7823387)
chr4 (168-297)||(45384618-45384747)
chr4 (103-140)||(48734178-48734215)
chr4 (106-154)||(47208238-47208286)
[»] chr6 (4 HSPs)
chr6 (78-357)||(21015979-21016258)
chr6 (237-344)||(21979420-21979527)
chr6 (104-151)||(21979278-21979325)
chr6 (108-148)||(14197337-14197377)
[»] chr5 (8 HSPs)
chr5 (77-347)||(9119922-9120201)
chr5 (111-347)||(179217-179462)
chr5 (97-295)||(42561976-42562174)
chr5 (80-151)||(29696600-29696671)
chr5 (100-154)||(29688490-29688544)
chr5 (244-302)||(29688336-29688394)
chr5 (252-341)||(29696401-29696490)
chr5 (82-154)||(29712069-29712141)
[»] chr8 (14 HSPs)
chr8 (105-367)||(4031577-4031822)
chr8 (173-310)||(4962244-4962385)
chr8 (1-109)||(4030335-4030443)
chr8 (174-298)||(12200553-12200677)
chr8 (174-298)||(12444981-12445105)
chr8 (236-298)||(12195535-12195597)
chr8 (236-298)||(12439963-12440025)
chr8 (97-154)||(15349244-15349301)
chr8 (99-154)||(4962161-4962219)
chr8 (178-292)||(15349100-15349214)
chr8 (97-154)||(12195685-12195742)
chr8 (97-154)||(12200703-12200760)
chr8 (97-154)||(12440113-12440170)
chr8 (97-154)||(12445131-12445188)
[»] chr7 (1 HSPs)
chr7 (97-154)||(48884185-48884242)
[»] chr1 (6 HSPs)
chr1 (97-289)||(24340634-24340829)
chr1 (97-289)||(24352999-24353194)
chr1 (97-149)||(24367531-24367583)
chr1 (97-154)||(24310577-24310634)
chr1 (97-154)||(24416139-24416196)
chr1 (97-146)||(24323139-24323188)


Alignment Details
Target: chr3 (Bit Score: 365; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Original strand, 11005475 - 11005859
Alignment:
Q  1 accaatccagtaccaccatttgtcccaataatatgaccacattttgtagagcatattggaggatcgtattgaatgcaaatgccatcaatagataagacaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  11005475 accaatccagtaccaccatttgtcccaataatatgaccacattttgtaaagcatattggcggatcgtactgaatgcaaatgccatcaatagataagacaa 11005574  T
Q  101 gagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgtttcatcccccatagcccatagactaagaaattctccaaatat 200  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11005575 gagccttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgtttcatcccccatagcccatagactaagaaattctccaaatat 11005674  T
Q  201 ccacaaatcacaatctataggttcatgatcaaaaccatctggaaaaggcatctctaaaagtttcctttccactaaatcaaagccaacaataacatccatt 300  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11005675 ccacaaatcacaatctataggttcatgatcaaaaccatatggaaaaggcatctctaaaagtttcctttccactaaatcaaagccaacaataacatccatt 11005774  T
Q  301 gacaaatcatggcgaaaagagaaccaatgaatagtcccattaaaaagcgtccctaccttgggatcatcatttgcattcatataat 385  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11005775 gacaaatcatggcgaaaagagaaccaatgaatagtcccattaaaaagcgtccctaccttgggatcatcatttgcattcatataat 11005859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 15 - 385
Target Start/End: Original strand, 11024064 - 11024434
Alignment:
Q  15 accatttgtcccaataatatgaccacattttgtagagcatattggaggatcgtattgaatgcaaatgccatcaatagataagacaagagtcttagtccaa 114  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| ||||| || |||||| |||||  ||||||||||| |||||||||||||||||||    
T  11024064 accatttgttccaataatatgaccacattttgtagagcatattgggggatcatactgaatgtaaatgtaatcaatagataggacaagagtcttagtccaa 11024163  T
Q  115 gacgaatgcactttgtattctttcataacccatatttcaattgtttcatcccccatagcccatagactaagaaattctccaaatatccacaaatcacaat 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  11024164 gacgaatgcactttgtattctttcataacccatatttcaattgttacaccccccatagcccatagactgagaaattctccaaatatccacaaatcacaat 11024263  T
Q  215 ctataggttcatgatcaaaaccatctggaaaaggcatctctaaaagtttcctttccactaaatcaaagccaacaataacatccattgacaaatcatggcg 314  Q
    | |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||| ||||||||||||||| ||||||| |||    
T  11024264 ccataggttcatgatcaaaaccatctggaaaaggcatctccaaaagttccctttccactaaatcaaaggcaataataacatccattgataaatcattgcg 11024363  T
Q  315 aaaagagaaccaatgaatagtcccattaaaaagcgtccctaccttgggatcatcatttgcattcatataat 385  Q
    ||||||||||||||||||| |||||||||| || ||||||||  |||||||||||||| ||||||||||||    
T  11024364 aaaagagaaccaatgaatattcccattaaagagtgtccctactgtgggatcatcatttacattcatataat 11024434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 12 - 385
Target Start/End: Original strand, 11015049 - 11015422
Alignment:
Q  12 accaccatttgtcccaataatatgaccacattttgtagagcatattggaggatcgtattgaatgcaaatgccatcaatagataagacaagagtcttagtc 111  Q
    |||||||||||| |||||||||  ||||| |||||||||||||||||| ||||  || | |||| ||||| |||||||||||| ||||||||| |||  |    
T  11015049 accaccatttgttccaataataccaccactttttgtagagcatattgggggataatactcaatggaaatgtcatcaatagataggacaagagttttaacc 11015148  T
Q  112 caagacgaatgcactttgtattctttcataacccatatttcaattgtttcatcccccatagcccatagactaagaaattctccaaatatccacaaatcac 211  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  11015149 caagacgaatgcactttgtattctttcataacccatatttcaactgttccatcctccatagcccatagacttagaaattctccaaatatccacaaatcac 11015248  T
Q  212 aatctataggttcatgatcaaaaccatctggaaaaggcatctctaaaagtttcctttccactaaatcaaagccaacaataacatccattgacaaatcatg 311  Q
    |||||||||||||||  |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  11015249 aatctataggttcatagtcaaaaccatctggaaaatgcatctccaaaagtttcctttccactaaatcaaagccaacaataacatccattgataaatcatg 11015348  T
Q  312 gcgaaaagagaaccaatgaatagtcccattaaaaagcgtccctaccttgggatcatcatttgcattcatataat 385  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||    
T  11015349 gcgaaaagagaaccaatgaatagtcccattaaagagcatccctactttgggatcatcatttgcattcatataat 11015422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 78 - 384
Target Start/End: Original strand, 47451524 - 47451836
Alignment:
Q  78 aatgccatcaatagataagacaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgtttcatccc------ccata 171  Q
    ||||||||||||||  |  |||||||||||   |||||||||||  ||||||||||||||||| ||||||||||||| | | ||||         ||| |    
T  47451524 aatgccatcaataggaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcattatgacaatccaga 47451623  T
Q  172 gcccatagactaagaaattctccaaatatccacaaatcacaatctataggttcatgatcaaaaccatctggaaaaggcatctctaaaagtttcctttcca 271  Q
     ||| ||||||||||||||||||||||| ||||||| ||||||   |||||||||| |||||| ||||||| |||  ||  ||||||| ||| |||||||    
T  47451624 acccttagactaagaaattctccaaatacccacaaaccacaattggtaggttcatggtcaaaatcatctggcaaattcacatctaaaaattttctttcca 47451723  T
Q  272 ctaaatcaaagccaacaataacatccattgacaaatcatggcgaaaagagaaccaatgaatagtcccattaaaaagcgtccctaccttgggatcatcatt 371  Q
     |||||||||  || ||||||||| ||| || | |||||| |||||||  ||||||| ||||| |||||| || |||  ||||||  | |||||||||      
T  47451724 ttaaatcaaatgcagcaataacattcatggatatatcatgacgaaaagccaaccaataaatagccccattgaagagccaccctactctaggatcatcaca 47451823  T
Q  372 tgcattcatataa 384  Q
    || ||||||||||    
T  47451824 tgaattcatataa 47451836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 125; Significance: 3e-64; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 97 - 368
Target Start/End: Complemental strand, 48853099 - 48852825
Alignment:
Q  97 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgtttcatcccccatagcccatagactaagaaattctccaa 196  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||| |||||||||||  |||||| ||| |||||||||| ||    
T  48853099 acaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttcaactgtatcatcccccatgacccatatacttagaaattctctaa 48853000  T
Q  197 atatccacaaatcacaatctataggttcatgatcaaaaccatctggaaaaggcatctctaaaagtttcctttccactaaatcaaagccaacaataac--- 293  Q
    ||| ||||||||| ||||   |||||||||| | |||| |||| || |||| || |||||||||||||||||||| |||||||||| | ||||||||       
T  48852999 atacccacaaatcgcaataggtaggttcatggtaaaaatcatccggcaaagacaactctaaaagtttcctttccattaaatcaaaggccacaataacatt 48852900  T
Q  294 atccattgacaaatcatggcgaaaagagaaccaatgaatagtcccattaaaaagcgtccctaccttgggatcatc 368  Q
    || |||||  |||||||| |||||||  ||||||||||||| |||||||||||||| ||||||  ||||||||||    
T  48852899 attcattggtaaatcatgacgaaaagccaaccaatgaatagccccattaaaaagcgaccctactctgggatcatc 48852825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 97 - 343
Target Start/End: Original strand, 45371717 - 45371963
Alignment:
Q  97 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgtttcatcccccatagcccatagactaagaaattctccaa 196  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||  | ||||||| ||||| ||||||| ||| |    
T  45371717 acaaaagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaactgtatcttccttcttagcccaaagactgagaaattttccga 45371816  T
Q  197 atatccacaaatcacaatctataggttcatgatcaaaaccatctggaaaaggcatctctaaaagtttcctttccactaaatcaaagccaacaataacatc 296  Q
    ||| ||| |||||||||| | ||||  || | ||||||||||| || |||| ||||||||||||||||| ||||| |||||||||| ||| |||||||      
T  45371817 atacccaaaaatcacaatatgtaggaccagggtcaaaaccatcaggcaaagacatctctaaaagtttccgttccattaaatcaaaggcaagaataacact 45371916  T
Q  297 cattgacaaatcatggcgaaaagagaaccaatgaatagtcccattaa 343  Q
    ||| || |||||||| |||||||| ||||||| ||||| ||||||||    
T  45371917 catcgataaatcatgacgaaaagacaaccaataaatagccccattaa 45371963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 78 - 356
Target Start/End: Original strand, 48147337 - 48147621
Alignment:
Q  78 aatgccatcaatagataagacaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgtt------tcatcccccata 171  Q
    ||||||||||||||| ||   |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |       ||||   |||||    
T  48147337 aatgccatcaatagacaaattaagagtcttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactctgctattgtcatgatccata 48147436  T
Q  172 gcccatagactaagaaattctccaaatatccacaaatcacaatctataggttcatgatcaaaaccatctggaaaaggcatctctaaaagtttcctttcca 271  Q
     ||  |||||| ||||||| |||||||| |||||||| || || |  || |||| |  |||||||||||||||||||||||||||||||| |||||||||    
T  48147437 cccgttagactgagaaattgtccaaatacccacaaatgactatattcagattcaaggccaaaaccatctggaaaaggcatctctaaaagtctcctttcca 48147536  T
Q  272 ctaaatcaaagccaacaataacatccattgacaaatcatggcgaaaagagaaccaatgaatagtcccattaaaaagcgtccctac 356  Q
     |||||||||  ||| |||||||||| |||  ||||||| | ||||||  ||||||||||||| |||| ||||||| | ||||||    
T  48147537 ttaaatcaaatgcaataataacatcccttgctaaatcattgtgaaaagccaaccaatgaatagccccactaaaaagtgaccctac 48147621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 25 - 234
Target Start/End: Original strand, 49043739 - 49043948
Alignment:
Q  25 ccaataatatgaccacattttgtagagcatattggaggatcgtattgaatgcaaatgccatcaatagataagacaagagtcttagtccaagacgaatgca 124  Q
    |||||||||| ||||  ||||||| | ||||||||||    ||| ||| ||  |||| |||||||||| || ||||||||||||||||| ||||||||||    
T  49043739 ccaataatatcaccaatttttgtacaacatattggagcgaagtaatgagtgggaatgacatcaatagaaaaaacaagagtcttagtccatgacgaatgca 49043838  T
Q  125 ctttgtattctttcataacccatatttcaattgtttcatcccccatagcccatagactaagaaattctccaaatatccacaaatcacaatctataggttc 224  Q
    |||||||||||||||| ||||||||||||| | | |||| |    ||| ||||| |||||||| ||| ||||||| |||||||||||||||| |||||||    
T  49043839 ctttgtattctttcatcacccatatttcaactatatcattctgtctagtccatacactaagaagttcaccaaatacccacaaatcacaatctgtaggttc 49043938  T
Q  225 atgatcaaaa 234  Q
    ||| ||||||    
T  49043939 atgttcaaaa 49043948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 77 - 281
Target Start/End: Original strand, 48156052 - 48156262
Alignment:
Q  77 aaatgccatcaatagataagacaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgtttcat---ccc---ccat 170  Q
    |||||||||||||||  | ||||||||| ||||||||||| ||||||||||||||||| ||||| ||||||||||||| | ||||||   |||   | |     
T  48156052 aaatgccatcaataggaaggacaagagttttagtccaagaagaatgcactttgtattcgttcatcacccatatttcaactctttcattagcccaatcaac 48156151  T
Q  171 agcccatagactaagaaattctccaaatatccacaaatcacaatctat-aggttcatgatcaaaaccatctggaaaaggcatctctaaaagtttcctttc 269  Q
    |||||||| ||| |||||||||||||||| |||||||| ||||| ||| || |  ||| | ||||||||| |||||||||||||||||||||||||  ||    
T  48156152 agcccataaactgagaaattctccaaatacccacaaattacaat-tatcagttgtatggtgaaaaccatcaggaaaaggcatctctaaaagtttccgatc 48156250  T
Q  270 cactaaatcaaa 281  Q
    || |||||||||    
T  48156251 cattaaatcaaa 48156262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 25 - 346
Target Start/End: Original strand, 45365791 - 45366118
Alignment:
Q  25 ccaataatatgaccacattttgtagagcatattggaggatcgtattgaatgcaaatgccatcaatagataagacaagagtcttagtccaagacgaatgca 124  Q
    |||||||||| ||| | ||||||||||||||  || | |  ||||||| ||  ||||||||||||||  |  ||  ||||||| |||||||||||| |||    
T  45365791 ccaataatatcaccgctttttgtagagcataaaggggaaaagtattgagtgggaatgccatcaataggaagaacgtgagtctttgtccaagacgaacgca 45365890  T
Q  125 ctttgtattctttcataacccatatttcaattgtttcatcccc------catagcccatagactaagaaattctccaaatatccacaaatcacaatctat 218  Q
    |||| ||||||||||| ||||||||||||| ||| ||||   |      ||||||||| | ||| | |||||||||||||| ||||||| |||||||       
T  45365891 ctttatattctttcatcacccatatttcaactgtatcattatcataatccatagcccaaaaactgaaaaattctccaaatacccacaaaccacaatcgtg 45365990  T
Q  219 aggttcatgatcaaaaccatctggaaaaggcatctctaaaagtttcctttccactaaatcaaagccaacaataacatccattgacaaatcatggcgaaaa 318  Q
    ||||||| | | |||  ||||||||||| | || |  |||||||||||||| | ||||||||||  || ||||||||||| |  |||| || |  |||||    
T  45365991 aggttcacggttaaactcatctggaaaatgaatataaaaaagtttcctttcgattaaatcaaaggaaataataacatccaatcgcaaaccaagatgaaaa 45366090  T
Q  319 gagaaccaatgaatagtcccattaaaaa 346  Q
    |  ||||||||||||| |||||||||||    
T  45366091 gcaaaccaatgaatagccccattaaaaa 45366118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 78 - 163
Target Start/End: Complemental strand, 7790517 - 7790432
Alignment:
Q  78 aatgccatcaatagataagacaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgtttcat 163  Q
    |||| |||||||||| |  |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  7790517 aatggcatcaatagaaagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaattgtatcat 7790432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 97 - 260
Target Start/End: Complemental strand, 50666733 - 50666561
Alignment:
Q  97 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgtttcatcc------cccatagcccatagactaagaaatt 190  Q
    |||||||| ||||||||||| ||||||||||||||||||| ||| ||||||| ||||||||| |||| |       | |||||| ||| | ||||||| |    
T  50666733 acaagagttttagtccaagatgaatgcactttgtattcttacatcacccataattcaattgtatcattcacataatcaatagccgataaattaagaaact 50666634  T
Q  191 ctccaaatatccacaaatcacaatctataggttcatgatcaaa---accatctggaaaaggcatctctaaaag 260  Q
    ||| ||||| |||||||||||||| ||||||| ||||  ||||   ||||||||||| |||||||||||||||    
T  50666633 ctctaaatacccacaaatcacaatttataggtacatggacaaaatcaccatctggaagaggcatctctaaaag 50666561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 97 - 199
Target Start/End: Original strand, 49038521 - 49038623
Alignment:
Q  97 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgtttcatcccccatagcccatagactaagaaattctccaa 196  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||  ||  ||  | |||||||||||| ||| |||||||||| ||    
T  49038521 acaagagtcttagtccaagacgaatgaactttgtattctttcatcacccatatttcaacggtagcacgctccatagcccatacactgagaaattctcgaa 49038620  T
Q  197 ata 199  Q
    |||    
T  49038621 ata 49038623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 78 - 234
Target Start/End: Original strand, 49048179 - 49048334
Alignment:
Q  78 aatgccatcaatagataagacaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgtttcatcccccatagcccat 177  Q
    |||| ||||| |||| || |||| |||||||||||| |||||||||||||| || |||||||| ||||||||||||| | | ||||||  | ||| ||||    
T  49048179 aatgacatcagtagaaaaaacaaaagtcttagtccatgacgaatgcactttatactctttcatcacccatatttcaactatatcatcctgcttagtccat 49048278  T
Q  178 agactaagaaattctccaaatatccacaaatcacaatctataggttcatgatcaaaa 234  Q
    | ||| ||||| || || |||| |||||||||||||||| |||||| ||| ||||||    
T  49048279 acactgagaaactcacc-aatacccacaaatcacaatctgtaggttaatgttcaaaa 49048334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 97 - 154
Target Start/End: Complemental strand, 48864453 - 48864396
Alignment:
Q  97 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaa 154  Q
    |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  48864453 acaagaatcttagtccaagacgaatgcactttgtattctttcatcacccatatttcaa 48864396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 236 - 357
Target Start/End: Original strand, 49043977 - 49044098
Alignment:
Q  236 catctggaaaaggcatctctaaaagtttcctttccactaaatcaaagccaacaataacatccattgacaaatcatggcgaaaagagaaccaatgaatagt 335  Q
    ||||||| ||||  || ||||||||||||||||| | |||||||||| |||||||||||| |||||| |||||| |  ||||||  ||||| |||||||     
T  49043977 catctggcaaagatatgtctaaaagtttcctttcaattaaatcaaaggcaacaataacattcattgataaatcaagatgaaaagccaaccagtgaatagc 49044076  T
Q  336 cccattaaaaagcgtccctacc 357  Q
    ||||||||| |||| |||||||    
T  49044077 cccattaaagagcgaccctacc 49044098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 97 - 292
Target Start/End: Original strand, 37826633 - 37826840
Alignment:
Q  97 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgtttcat------cccccatagcccatagactaagaaatt 190  Q
    |||||||||||||||||||||||||||| ||||||||||||||| |||| || || || ||| | ||        ||||| |||||||||||||||||||    
T  37826633 acaagagtcttagtccaagacgaatgcagtttgtattctttcatcacccgtaatttaagtgtatgattataactgcccatggcccatagactaagaaatt 37826732  T
Q  191 ctccaaatatccacaaatcacaatctataggttcatgatcaaaaccatctggaa----aa--ggcatctctaaaagtttcctttccactaaatcaaagcc 284  Q
    ||||||||| ||||||| || ||| |  ||| ||||  | |||| |||||||||    ||  || |||||||| ||||||||||||| ||||| |||| |    
T  37826733 ctccaaatacccacaaaccaaaatatggaggatcatcgtgaaaatcatctggaactggaacgggtatctctaacagtttcctttccattaaattaaaggc 37826832  T
Q  285 aacaataa 292  Q
    ||||||||    
T  37826833 aacaataa 37826840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 106 - 349
Target Start/End: Complemental strand, 48903364 - 48903118
Alignment:
Q  106 ttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgtttcatc---ccccatagcccatagactaagaaattctccaaatatcc 202  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||| | | | |||     ||| ||||||||| ||||||||||||||||||| ||    
T  48903364 ttagtccaagacaaatgcactttgtattctttcatcacccatatttcaaatttattatcgtaatccaaagcccataggctaagaaattctccaaataccc 48903265  T
Q  203 acaaatcacaatctataggttcatgatcaaaaccatctggaaaaggcatctctaaaagtttcctttccactaaatcaaagccaacaataacatccattga 302  Q
    | |||||||| | | ||| |||||  || | | ||  ||| | ||| ||||| ||||| |   ||| || |||||||||| |||||||||||| | ||      
T  48903264 ataaatcacactttgtagattcatagtccacatcaagtgggagaggaatctcaaaaaggtcttttttcattaaatcaaaggcaacaataacattctttct 48903165  T
Q  303 caaatcatggcgaaaagagaaccaatgaatagtcccattaaaaagcg 349  Q
     ||||||||  ||||||  ||| ||||||||| ||||||||| ||||    
T  48903164 taaatcatgatgaaaagccaactaatgaatagccccattaaagagcg 48903118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 97 - 163
Target Start/End: Complemental strand, 7766060 - 7765994
Alignment:
Q  97 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgtttcat 163  Q
    ||||| ||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||| ||||    
T  7766060 acaagtgtcttagtccatgacgaatacactttgtattctttcatcacccatatttcaattgtatcat 7765994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 97 - 163
Target Start/End: Complemental strand, 7771813 - 7771747
Alignment:
Q  97 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgtttcat 163  Q
    |||||||| |||||||| |||||||||||||||||||||||||| ||||||||| ||||||| ||||    
T  7771813 acaagagttttagtccatgacgaatgcactttgtattctttcatcacccatattacaattgtatcat 7771747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 176 - 278
Target Start/End: Original strand, 43596153 - 43596255
Alignment:
Q  176 atagactaagaaattctccaaatatccacaaatcacaatctataggttcatgatcaaaaccatctggaaaaggcatctctaaaagtttcctttccactaa 275  Q
    |||||||||||||||| ||||||| ||||| |||||||| | |||| ||||  ||||||||||| |||||| |||||||||| ||||| ||||| | |||    
T  43596153 atagactaagaaattccccaaatacccacatatcacaatttttaggatcatagtcaaaaccatcgggaaaaagcatctctaagagtttgctttcaattaa 43596252  T
Q  276 atc 278  Q
    |||    
T  43596253 atc 43596255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 97 - 162
Target Start/End: Complemental strand, 7813895 - 7813830
Alignment:
Q  97 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgtttca 162  Q
    |||||||| ||| ||||||||||||||||||||||||||||||  ||||||||||||||| |||||    
T  7813895 acaagagttttattccaagacgaatgcactttgtattctttcaacacccatatttcaattctttca 7813830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 97 - 163
Target Start/End: Original strand, 7237386 - 7237452
Alignment:
Q  97 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgtttcat 163  Q
    |||||||| ||||||||| ||||||||| ||||||||||||||| ||||||||| ||||||| ||||    
T  7237386 acaagagttttagtccaaaacgaatgcattttgtattctttcatcacccatattacaattgtatcat 7237452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 97 - 163
Target Start/End: Original strand, 7773468 - 7773534
Alignment:
Q  97 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgtttcat 163  Q
    |||||||  ||| ||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||    
T  7773468 acaagagatttaatccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatcat 7773534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 97 - 163
Target Start/End: Complemental strand, 7786882 - 7786816
Alignment:
Q  97 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgtttcat 163  Q
    |||||||||||| |||||||  ||||||| |||||||||||||| ||||||||||||||||| ||||    
T  7786882 acaagagtcttattccaagataaatgcacgttgtattctttcatcacccatatttcaattgtatcat 7786816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 97 - 163
Target Start/End: Complemental strand, 7878801 - 7878735
Alignment:
Q  97 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgtttcat 163  Q
    |||||||| ||| ||||||| ||||||||||||||||||||||| ||||||||||||| ||| ||||    
T  7878801 acaagagttttaatccaagatgaatgcactttgtattctttcatcacccatatttcaactgtatcat 7878735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 236 - 342
Target Start/End: Original strand, 48705170 - 48705276
Alignment:
Q  236 catctggaaaaggcatctctaaaagtttcctttccactaaatcaaagccaacaataacatccattgacaaatcatggcgaaaagagaaccaatgaatagt 335  Q
    ||||||| ||| |||| || ||||||| |||||||| |||||||||| |||||||||||||| ||   |||||||| ||| |||  |||||||||||||     
T  48705170 catctggcaaaagcatatcaaaaagttccctttccattaaatcaaaggcaacaataacatcctttcgtaaatcatgacgataagccaaccaatgaatagc 48705269  T
Q  336 cccatta 342  Q
    |||||||    
T  48705270 cccatta 48705276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 97 - 162
Target Start/End: Complemental strand, 7801055 - 7800990
Alignment:
Q  97 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgtttca 162  Q
    |||||||| ||| |||||||||||||||||||||| |||||||  ||||||||||||||| |||||    
T  7801055 acaagagttttattccaagacgaatgcactttgtaatctttcaacacccatatttcaattctttca 7800990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 97 - 154
Target Start/End: Complemental strand, 7908720 - 7908663
Alignment:
Q  97 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaa 154  Q
    |||||||| ||| ||||||| ||||||||||||||||||||||| |||||||||||||    
T  7908720 acaagagttttattccaagatgaatgcactttgtattctttcatcacccatatttcaa 7908663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 101 - 154
Target Start/End: Original strand, 45384539 - 45384592
Alignment:
Q  101 gagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaa 154  Q
    ||||||| |||||||||||||||||||| ||||||||||| |||||||||||||    
T  45384539 gagtctttgtccaagacgaatgcactttatattctttcatcacccatatttcaa 45384592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 106 - 167
Target Start/End: Complemental strand, 48861697 - 48861636
Alignment:
Q  106 ttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgtttcatcccc 167  Q
    |||||||||||| ||||||||||||||||||| || ||||||||||||| ||| ||||||||    
T  48861697 ttagtccaagacaaatgcactttgtattcttttattacccatatttcaaatgtatcatcccc 48861636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 158
Target Start/End: Complemental strand, 48870978 - 48870917
Alignment:
Q  97 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgt 158  Q
    ||||||||||| ||||||||||| | |||||||||||| ||||| ||||| |||||||||||    
T  48870978 acaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaattgt 48870917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 158
Target Start/End: Complemental strand, 48876282 - 48876221
Alignment:
Q  97 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgt 158  Q
    ||||||||||| ||||||||||| | |||||||||||| ||||| ||||| |||||||||||    
T  48876282 acaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaattgt 48876221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 158
Target Start/End: Complemental strand, 48886664 - 48886603
Alignment:
Q  97 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgt 158  Q
    ||||||||||| ||||||||||| | |||||||||||| ||||| ||||| |||||||||||    
T  48886664 acaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaattgt 48886603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 346
Target Start/End: Complemental strand, 7765908 - 7765802
Alignment:
Q  240 tggaaaaggcatctctaaaagtttcctttccactaaatcaaagccaacaataacatccattgacaaatcatggcgaaaagagaaccaatgaatagtccca 339  Q
    ||||| ||||||||| || | | ||||||||  |||||||||||||||||| |||||||  |  | |||||| ||  |||| ||||||||||||| ||||    
T  7765908 tggaagaggcatctcaaacaatatcctttccgttaaatcaaagccaacaatgacatccaaagctatatcatgacgcgaagacaaccaatgaatagcccca 7765809  T
Q  340 ttaaaaa 346  Q
    |||||||    
T  7765808 ttaaaaa 7765802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 153
Target Start/End: Complemental strand, 50672908 - 50672860
Alignment:
Q  105 cttagtccaagacgaatgcactttgtattctttcataacccatatttca 153  Q
    ||||||||| |||||||||| |||||||| |||||| ||||||||||||    
T  50672908 cttagtccacgacgaatgcaatttgtattgtttcatcacccatatttca 50672860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 168 - 207
Target Start/End: Complemental strand, 7878087 - 7878048
Alignment:
Q  168 catagcccatagactaagaaattctccaaatatccacaaa 207  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  7878087 catagcccatagactgagaaattctccaaatacccacaaa 7878048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 101 - 140
Target Start/End: Original strand, 48735058 - 48735097
Alignment:
Q  101 gagtcttagtccaagacgaatgcactttgtattctttcat 140  Q
    |||| |||||||||||||||| ||||||||||||||||||    
T  48735058 gagttttagtccaagacgaattcactttgtattctttcat 48735097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 196 - 271
Target Start/End: Complemental strand, 48861580 - 48861505
Alignment:
Q  196 aatatccacaaatcacaatctataggttcatgatcaaaaccatctggaaaaggcatctctaaaagtttcctttcca 271  Q
    |||| |||||||||||||| | |||||||||| ||||||  ||   |||||| |||||||||||||||| ||||||    
T  48861580 aatacccacaaatcacaatatgtaggttcatggtcaaaattatggagaaaagacatctctaaaagtttcttttcca 48861505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 162
Target Start/End: Complemental strand, 7823387 - 7823322
Alignment:
Q  97 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgtttca 162  Q
    |||||||| ||| |||||||| ||||||||||||| ||||| |  ||||||||||| ||| |||||    
T  7823387 acaagagttttattccaagacaaatgcactttgtaatctttaaacacccatatttccattctttca 7823322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 297
Target Start/End: Original strand, 45384618 - 45384747
Alignment:
Q  168 catagcccatagactaagaaattctccaaatatccacaaatcacaatctataggttcatgatcaaaaccatctggaaaaggcatctctaaaagtttcctt 267  Q
    |||||| || | ||| |||||||||||||||| ||||||| |||||||  |||||||| | | |||  ||||||| ||| |||| |  ||||||||| ||    
T  45384618 catagctcaaaaactgagaaattctccaaatacccacaaaccacaatcggtaggttcacggttaaactcatctggcaaatgcatataaaaaagtttcatt 45384717  T
Q  268 tccactaaatcaaagccaacaataacatcc 297  Q
    || | ||||||||   ||| ||||||||||    
T  45384718 tcgattaaatcaacagcaataataacatcc 45384747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 140
Target Start/End: Complemental strand, 48734215 - 48734178
Alignment:
Q  103 gtcttagtccaagacgaatgcactttgtattctttcat 140  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  48734215 gtctttgtccaatacgaatgcactttgtattctttcat 48734178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 106 - 154
Target Start/End: Complemental strand, 47208286 - 47208238
Alignment:
Q  106 ttagtccaagacgaatgcactttgtattctttcataacccatatttcaa 154  Q
    ||||||||||| || || ||||||||||||||||| |||| ||||||||    
T  47208286 ttagtccaagatgattgtactttgtattctttcatcacccttatttcaa 47208238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 96; Significance: 6e-47; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 78 - 357
Target Start/End: Complemental strand, 21016258 - 21015979
Alignment:
Q  78 aatgccatcaatagataagacaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgtttcatcccccatagcccat 177  Q
    |||| |||||||||| ||   |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | | |||    |||||| ||||    
T  21016258 aatgtcatcaatagagaaagtaagagtcttagtccaagacgaatgtactttgtattctttcataacccatatttcaactatatcactatccatagtccat 21016159  T
Q  178 agactaagaaattctccaaatatccacaaatcacaatctataggttcatgatcaaaaccatctggaaaaggcatctctaaaagtttcctttccactaaat 277  Q
    | ||| | |||||| || |||| |||||||||||||| |||||||||||| || | | |||| || |||| ||| || |||||||| ||||| |  ||||    
T  21016158 acactcaaaaattcaccgaatacccacaaatcacaatatataggttcatgttccatatcatccggcaaagacatgtcgaaaagttttctttctatcaaat 21016059  T
Q  278 caaagccaacaataacatccattgacaaatcatggcgaaaagagaaccaatgaatagtcccattaaaaagcgtccctacc 357  Q
    ||||| |||  ||||| | |||||| |||||||| |||||||  ||||||||||||| ||||||||||| || |||||||    
T  21016058 caaaggcaatgataactttcattgataaatcatgacgaaaagccaaccaatgaatagccccattaaaaaccgaccctacc 21015979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 237 - 344
Target Start/End: Original strand, 21979420 - 21979527
Alignment:
Q  237 atctggaaaaggcatctctaaaagtttcctttccactaaatcaaagccaacaataacatccattgacaaatcatggcgaaaagagaaccaatgaatagtc 336  Q
    |||||||| ||| ||||| |||||||||||||| | |||||||||| |||||||||||  ||  || |||||||  |||||||  ||||||||||||| |    
T  21979420 atctggaagagggatctcaaaaagtttcctttctattaaatcaaaggcaacaataacaaacacagataaatcataccgaaaagtcaaccaatgaatagcc 21979519  T
Q  337 ccattaaa 344  Q
    | ||||||    
T  21979520 ctattaaa 21979527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 104 - 151
Target Start/End: Original strand, 21979278 - 21979325
Alignment:
Q  104 tcttagtccaagacgaatgcactttgtattctttcataacccatattt 151  Q
    ||||| ||||||| ||| ||||||||||||||||||| ||||||||||    
T  21979278 tcttattccaagaggaacgcactttgtattctttcatcacccatattt 21979325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 148
Target Start/End: Original strand, 14197337 - 14197377
Alignment:
Q  108 agtccaagacgaatgcactttgtattctttcataacccata 148  Q
    ||||||||| ||||||| ||||||||||||||| |||||||    
T  14197337 agtccaagatgaatgcattttgtattctttcatcacccata 14197377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 77 - 347
Target Start/End: Complemental strand, 9120201 - 9119922
Alignment:
Q  77 aaatgccatcaatagataagacaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgtttcat------cccccat 170  Q
    ||||||| |||||||| || |||||||| ||  ||||||| ||||||||||||||||||||||| ||||||||||||| ||| ||||         ||||    
T  9120201 aaatgccgtcaatagacaaaacaagagttttcttccaagaggaatgcactttgtattctttcatcacccatatttcaactgtatcattagcaaaatccat 9120102  T
Q  171 agcccatagactaagaaattctccaaatatccacaaatcacaatctataggttcatgatcaaaaccatctggaaaaggcatctctaaaagtttcctttcc 270  Q
    |||||||| ||| |||||||||||||||| ||||| |||||||| | ||| ||||| ||||| | ||  ||| | ||| ||||| ||||||| | |||      
T  9120101 agcccatatactgagaaattctccaaatacccacacatcacaatttgtagcttcataatcaatatcaattgggagaggaatctcaaaaagttccgttttg 9120002  T
Q  271 actaaatcaaagccaacaataacatccattgacaa---atcatggcgaaaagagaaccaatgaatagtcccattaaaaag 347  Q
    | |||||||||| ||| ||||| |||| ||   ||   |||||| ||||||| |||||||||||||| |||||| |||||    
T  9120001 attaaatcaaaggcaagaataagatccttttgtaaatgatcatgacgaaaagcgaaccaatgaatagacccattgaaaag 9119922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 111 - 347
Target Start/End: Complemental strand, 179462 - 179217
Alignment:
Q  111 ccaagacgaatgcactttgtattctttcataacccatatttcaattg------tttcatcccccatagcccatagactaagaaattctccaaatatccac 204  Q
    |||||| ||||||||||||||||||||||| ||||||||||||| ||      | ||||   |||||||||||| ||| ||||||| |||||||| |||     
T  179462 ccaagatgaatgcactttgtattctttcatcacccatatttcaactgtatcattatcataatccatagcccatatactgagaaattgtccaaatacccat 179363  T
Q  205 aaatcacaatctataggttcatgatcaaaaccatctggaaaaggcatctctaaaagtttcctttccactaaatcaaagccaacaataacatccattgaca 304  Q
    | |||||||| | ||| |||||  |||| | ||  ||| | ||| ||||| ||||||| |||||  | || ||||||| ||| ||||| |||||||   |    
T  179362 acatcacaatttgtagcttcatagtcaatatcaattgggagaggaatctcaaaaagttcccttttgattagatcaaaggcaagaataagatccatttgta 179263  T
Q  305 a---atcatggcgaaaagagaaccaatgaatagtcccattaaaaag 347  Q
    |   |||||| |||||||||||||||||||||| ||||||||||||    
T  179262 aatgatcatgacgaaaagagaaccaatgaatagccccattaaaaag 179217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 97 - 295
Target Start/End: Original strand, 42561976 - 42562174
Alignment:
Q  97 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgtttcatcccccatagcccatagactaagaaattctccaa 196  Q
    |||||| ||||||||||||| ||||||||||||||||||||||| |||||||| ||||   | || |||| || |  ||||||||| |||||| ||| ||    
T  42561976 acaagaatcttagtccaagatgaatgcactttgtattctttcatcacccatatatcaacattatcgtccctcaaaatccatagactgagaaatcctctaa 42562075  T
Q  197 atatccacaaatcacaatctataggttcatgatcaaaaccatctggaaaaggcatctctaaaagtttcctttccactaaatcaaagccaacaataacat 295  Q
    ||| ||| ||| ||||| || | |  | || || || | ||  ||||| | | ||||||| |||||||||||||  ||||| |||| ||||||||||||    
T  42562076 atacccaaaaaccacaacctttggaattataattaatatcaattggaagaagaatctctagaagtttcctttccgttaaatgaaaggcaacaataacat 42562174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 80 - 151
Target Start/End: Complemental strand, 29696671 - 29696600
Alignment:
Q  80 tgccatcaatagataagacaagagtcttagtccaagacgaatgcactttgtattctttcataacccatattt 151  Q
    ||||||||| ||| | ||||||||||||||||||||| || ||||| ||||||| || ||| ||||||||||    
T  29696671 tgccatcaaaagacaggacaagagtcttagtccaagaggattgcacattgtatttttccatcacccatattt 29696600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 154
Target Start/End: Complemental strand, 29688544 - 29688490
Alignment:
Q  100 agagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaa 154  Q
    |||||||| ||||||||||| ||||| ||||||| |||||| |||||||||||||    
T  29688544 agagtctttgtccaagacgattgcacattgtattttttcatcacccatatttcaa 29688490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 244 - 302
Target Start/End: Complemental strand, 29688394 - 29688336
Alignment:
Q  244 aaaggcatctctaaaagtttcctttccactaaatcaaagccaacaataacatccattga 302  Q
    ||||||| ||||| |||||||||||||  ||||| ||| ||||||||||||| ||||||    
T  29688394 aaaggcaactctataagtttcctttccgttaaatgaaatccaacaataacattcattga 29688336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 341
Target Start/End: Complemental strand, 29696490 - 29696401
Alignment:
Q  252 ctctaaaagtttcctttccactaaatcaaagccaacaataacatccattgacaaatcatggcgaaaagagaaccaatgaatagtcccatt 341  Q
    ||||| |||||||||||| | ||||| |||| |||||||||||  |||||| | |||||  |||||||  ||||| ||||||| ||||||    
T  29696490 ctctagaagtttcctttcaattaaatgaaaggcaacaataacaggcattgatatatcattacgaaaagccaaccagtgaatagccccatt 29696401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 154
Target Start/End: Original strand, 29712069 - 29712141
Alignment:
Q  82 ccatcaatagataagacaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaa 154  Q
    ||||||| ||| || |||||||||||||||||||| ||   ||| ||||||| || ||| |||||||||||||    
T  29712069 ccatcaaaagacaaaacaagagtcttagtccaagaagatgtcacattgtatttttccatcacccatatttcaa 29712141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 105 - 367
Target Start/End: Original strand, 4031577 - 4031822
Alignment:
Q  105 cttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgtttcatcccccatagcccatagactaagaaattctccaaatatccac 204  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| | |  |||||||||     |  ||||||| |||| ||| ||||| ||||    
T  4031577 cttagtccaagacgaatgcattttgtattctttcataacccatatttcaactataacatccccca-----cggagactaacaaatcctctaaatacccac 4031671  T
Q  205 aaatcacaatctataggttcatgatcaaaaccatctggaaaaggcatctctaaaagtttcctttccactaaatcaaagccaacaataacatccattgaca 304  Q
    |||||||||| | | || |||  || |||| ||||||             ||||||||| ||||||  |||||||||| |||| |||||||  || || |    
T  4031672 aaatcacaatttttgggatcacaataaaaatcatctg------------ttaaaagttttctttccgttaaatcaaaggcaacgataacatttatcgata 4031759  T
Q  305 aatcatggcgaaaagagaaccaatgaatagtcccattaaaaagcgtccctaccttgggatcat 367  Q
    ||||||| |||||||  |||||||||||||  ||| ||||||||| ||||||  |||||||||    
T  4031760 aatcatgacgaaaagccaaccaatgaatagatccactaaaaagcgaccctactctgggatcat 4031822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 173 - 310
Target Start/End: Original strand, 4962244 - 4962385
Alignment:
Q  173 cccatagactaagaaattctccaaatatccacaaatcacaatctatag----gttcatgatcaaaaccatctggaaaaggcatctctaaaagtttccttt 268  Q
    |||||||||| |||||||||||||||| ||||||| || ||  || ||    ||||||  |||||| |||  |||| |||||||||||| | ||||||||    
T  4962244 cccatagactgagaaattctccaaatacccacaaaccataacttacagacaggttcatagtcaaaatcattgggaagaggcatctctaacaatttccttt 4962343  T
Q  269 ccactaaatcaaagccaacaataacatccattgacaaatcat 310  Q
    ||| |||||||||| ||| ||||||||||| ||| |||||||    
T  4962344 ccattaaatcaaagacaataataacatccactgataaatcat 4962385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 4030335 - 4030443
Alignment:
Q  1 accaatccagtaccaccatttgtcccaataatatgaccacattttgtagagcatattggaggatcgtattgaatgcaaatgccatcaatagataagacaa 100  Q
    |||||| |||||||||||| ||| |||||||||| ||||| | |||||||||| ||||| | |  ||| | |||| |||||||||||||||| |  ||||    
T  4030335 accaattcagtaccaccatatgttccaataatatcaccacttattgtagagcacattggggaaaagtacttaatggaaatgccatcaatagacagaacaa 4030434  T
Q  101 gagtcttag 109  Q
    |||||||||    
T  4030435 gagtcttag 4030443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 174 - 298
Target Start/End: Complemental strand, 12200677 - 12200553
Alignment:
Q  174 ccatagactaagaaattctccaaatatccacaaatcacaatctataggttcatgatcaaaaccatctggaaaaggcatctctaaaagtttcctttccact 273  Q
    |||||||||||||||||||||||||| ||||||| || |||  ||| |  |||| |  ||| ||||||||| | | |||||||  | ||||||||||| |    
T  12200677 ccatagactaagaaattctccaaatacccacaaaccataatacataagaccatggttgaaatcatctggaagaagtatctctaccaatttcctttccatt 12200578  T
Q  274 aaatcaaagccaacaataacatcca 298  Q
    ||||||||| |||||||||| ||||    
T  12200577 aaatcaaaggcaacaataacttcca 12200553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 174 - 298
Target Start/End: Complemental strand, 12445105 - 12444981
Alignment:
Q  174 ccatagactaagaaattctccaaatatccacaaatcacaatctataggttcatgatcaaaaccatctggaaaaggcatctctaaaagtttcctttccact 273  Q
    |||||||||||||||||||||||||| ||||||| || |||  ||| |  |||| |  ||| ||||||||| | | |||||||  | ||||||||||| |    
T  12445105 ccatagactaagaaattctccaaatacccacaaaccataatacataagaccatggttgaaatcatctggaagaagtatctctaccaatttcctttccatt 12445006  T
Q  274 aaatcaaagccaacaataacatcca 298  Q
    ||||||||| |||||||||| ||||    
T  12445005 aaatcaaaggcaacaataacttcca 12444981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 298
Target Start/End: Complemental strand, 12195597 - 12195535
Alignment:
Q  236 catctggaaaaggcatctctaaaagtttcctttccactaaatcaaagccaacaataacatcca 298  Q
    ||||||||| ||| |||||||| | ||||||||||| |||||||||| |||||||||| ||||    
T  12195597 catctggaagaggtatctctaacaatttcctttccattaaatcaaagacaacaataacttcca 12195535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 298
Target Start/End: Complemental strand, 12440025 - 12439963
Alignment:
Q  236 catctggaaaaggcatctctaaaagtttcctttccactaaatcaaagccaacaataacatcca 298  Q
    ||||||||| ||| |||||||| | ||||||||||| |||||||||| |||||||||| ||||    
T  12440025 catctggaagaggtatctctaacaatttcctttccattaaatcaaagacaacaataacttcca 12439963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 97 - 154
Target Start/End: Complemental strand, 15349301 - 15349244
Alignment:
Q  97 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaa 154  Q
    |||||| |||| |||||||| || | |||||||||||||||||| |||||||||||||    
T  15349301 acaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaa 15349244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 154
Target Start/End: Original strand, 4962161 - 4962219
Alignment:
Q  99 aagagtcttagtccaagacga---atgcactttgtattctttcataacccatatttcaa 154  Q
    ||||||||||||||| |||||   ||||| ||||||||||||||| |||||||||||||    
T  4962161 aagagtcttagtccacgacgacgaatgcagtttgtattctttcatcacccatatttcaa 4962219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 292
Target Start/End: Complemental strand, 15349214 - 15349100
Alignment:
Q  178 agactaagaaattctccaaatatccacaaatcacaatctataggttcatgatcaaaaccatctggaaaaggcatctctaaaagtttcctttccactaaat 277  Q
    ||||||| |||||| ||||| | ||||||| |||||||   ||  ||||| |||||| ||||||||  ||||||||| || |||||||||||   |||||    
T  15349214 agactaaaaaattcgccaaagacccacaaaccacaatcaccagcatcatgttcaaaatcatctggaggaggcatctcaaacagtttcctttcgtttaaat 15349115  T
Q  278 caaagccaacaataa 292  Q
    ||||  |||||||||    
T  15349114 caaatgcaacaataa 15349100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 154
Target Start/End: Complemental strand, 12195742 - 12195685
Alignment:
Q  97 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaa 154  Q
    |||||||||||||||||||| || ||   |||||||||||||||  ||||||||||||    
T  12195742 acaagagtcttagtccaagatgattgttgtttgtattctttcatctcccatatttcaa 12195685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 154
Target Start/End: Complemental strand, 12200760 - 12200703
Alignment:
Q  97 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaa 154  Q
    ||||||||||| |||||||||||| ||| |||||||  ||||||  ||||||||||||    
T  12200760 acaagagtcttggtccaagacgaacgcagtttgtatattttcatcgcccatatttcaa 12200703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 154
Target Start/End: Complemental strand, 12440170 - 12440113
Alignment:
Q  97 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaa 154  Q
    |||||||||||||||||||| || ||   |||||||||||||||  ||||||||||||    
T  12440170 acaagagtcttagtccaagatgattgttgtttgtattctttcatctcccatatttcaa 12440113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 154
Target Start/End: Complemental strand, 12445188 - 12445131
Alignment:
Q  97 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaa 154  Q
    ||||||||||| |||||||||||| ||| |||||||  ||||||  ||||||||||||    
T  12445188 acaagagtcttggtccaagacgaacgcagtttgtatattttcatcgcccatatttcaa 12445131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 97 - 154
Target Start/End: Complemental strand, 48884242 - 48884185
Alignment:
Q  97 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaa 154  Q
    |||||||||||||||||||||  ||||||||||||||||||||| ||| |||||||||    
T  48884242 acaagagtcttagtccaagacatatgcactttgtattctttcatcacctatatttcaa 48884185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 97 - 289
Target Start/End: Complemental strand, 24340829 - 24340634
Alignment:
Q  97 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgtttc---atcccccatagcccatagactaagaaattctc 193  Q
    |||||||| ||||||||||| || |||||||| ||||||||||| ||||| || ||||  || ||   |||| ||||| |||||||||| |||||| |||    
T  24340829 acaagagttttagtccaagatgactgcactttatattctttcattacccagatatcaaccgtatcctcatccaccataacccatagacttagaaatcctc 24340730  T
Q  194 caaatatccacaaatcacaatctataggttcatgatcaaaaccatctggaaaaggcatctctaaaagtttcctttccactaaatcaaagccaacaa 289  Q
     | ||| ||| ||| ||||| |  ||    |||| |||||| ||||||| | ||| ||||||| |||||||||||| ||||| |||||| ||||||    
T  24340729 tacatacccataaaccacaaaccgtataaccatggtcaaaatcatctgggagaggaatctctacaagtttcctttcgactaattcaaaggcaacaa 24340634  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 97 - 289
Target Start/End: Complemental strand, 24353194 - 24352999
Alignment:
Q  97 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgtttc---atcccccatagcccatagactaagaaattctc 193  Q
    |||||||| ||||||||||| || |||||||| ||||||||||| ||||| || ||||  || ||   |||| ||||| |||||||||| |||||| |||    
T  24353194 acaagagttttagtccaagatgactgcactttatattctttcattacccagatatcaaccgtatcctcatccaccataacccatagacttagaaatcctc 24353095  T
Q  194 caaatatccacaaatcacaatctataggttcatgatcaaaaccatctggaaaaggcatctctaaaagtttcctttccactaaatcaaagccaacaa 289  Q
     | ||| ||| ||| ||||| |  ||    |||| |||||| ||||||| | ||| ||||||| |||||||||||| ||||| |||||| ||||||    
T  24353094 tacatacccataaaccacaaaccgtataaccatggtcaaaatcatctgggagaggaatctctacaagtttcctttcgactaattcaaaggcaacaa 24352999  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 97 - 149
Target Start/End: Complemental strand, 24367583 - 24367531
Alignment:
Q  97 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatat 149  Q
    |||||||| ||||||||||||||||||||||||||||||| ||| ||||||||    
T  24367583 acaagagttttagtccaagacgaatgcactttgtattcttccattacccatat 24367531  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 97 - 154
Target Start/End: Complemental strand, 24310634 - 24310577
Alignment:
Q  97 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaa 154  Q
    |||||||| ||| ||||||| || |||||||||||||||||||| |||||||| ||||    
T  24310634 acaagagttttactccaagaagactgcactttgtattctttcatcacccatatatcaa 24310577  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 97 - 154
Target Start/End: Complemental strand, 24416196 - 24416139
Alignment:
Q  97 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaa 154  Q
    |||||||| ||||||||||| || ||| |||||||||||||||| |||||||| ||||    
T  24416196 acaagagttttagtccaagatgactgccctttgtattctttcatcacccatatatcaa 24416139  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 24323188 - 24323139
Alignment:
Q  97 acaagagtcttagtccaagacgaatgcactttgtattctttcataaccca 146  Q
    |||||||| |||||| |||| || |||||||||||||||||||| |||||    
T  24323188 acaagagttttagtcgaagatgactgcactttgtattctttcatcaccca 24323139  T

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