View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2687_low_4 (Length: 720)
Name: NF2687_low_4
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2687_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 550; Significance: 0; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 12 - 703
Target Start/End: Original strand, 42764554 - 42765243
Alignment:
| Q |
12 |
aagaatatcatagtgggagttcgttgcaagttcaaaatcaaatgatgaaggatttggaccgaaagaatgtgatcctaagtatacaatataggactaacgn |
111 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42764554 |
aagaatatcatagtgggagttcgttgcaagttcaaaatcaaatgatgaaggatttggaccgaaagaatgtgatcctaagtatacaatataggactaacga |
42764653 |
T |
|
| Q |
112 |
nnnnnnnnncacatgattgattagtaaaccaaatatttaaacattaaaatatgaaaattagattatgatgagcatgaaatttaataatatcataagttgt |
211 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42764654 |
aaaaaaaaacacatgattgattagtaaaccaaatatttaaacattaaaatatgaaaattagattatgatgagcatgaaatttaataatatcataagttgt |
42764753 |
T |
|
| Q |
212 |
ctacaatgagaatgagcaacgaataatgaaaacatgagacaataagctt-gcctgtttaattgcaagggtaggttcatgcagcaaaacaaaaagaagaag |
310 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42764754 |
ctacaatgagaatgagcaacgaataatgaaaacaagagacaataagctttgcctgtttaattgcaagggtaggttcatgcagcaaaacaaaaagaagaag |
42764853 |
T |
|
| Q |
311 |
tgatattaaaacatgagaaatggatgaagacattgcttctctcatgaatgatgtttgttatgcaaaataaaatctcaaggatatgcaaagggtatgtgtt |
410 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
42764854 |
tgatattaacacatgagaaatggatgaagacattgcttctctcatgaatgatgtttgttatgcaaaataaaatctcaaggatatacaaagggtatgtgtt |
42764953 |
T |
|
| Q |
411 |
ttccctcacttatataactaagtaagttatgtgattg-ttttttattcaaattccttttgtgagcagccattatgagtttgttatggagtcaactattgt |
509 |
Q |
| |
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|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42764954 |
ttccctcacttatataac----taagttatgtgattgtttttttattcaaattccttttgtgagcagccattatgagtttgttatggagtcaactattgt |
42765049 |
T |
|
| Q |
510 |
ggttaagttcattcttcatttccttcaacatttatgttaaataaatannnnnnnggtcaaggtaaataaatcaatttaattaaattaatatcagaaattg |
609 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42765050 |
ggttaagttcattcttcatttccttcaacatttatgttaaataaatatttttttgttcaaggtaaataaatcaatttaattaaattaatatcagaaattg |
42765149 |
T |
|
| Q |
610 |
cnnnnnnnnnnnnaaggtaaaaaatcgggtacaattattttcaaacaacgacaacaaggcaacattgataatatgttaattatattctcaaaat |
703 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
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| T |
42765150 |
cttttttgtttttaaggtaaaaaatcgggtacaattattttcaaacaacgacgacaaggcaacattgataatatgttaattatattcttaaaat |
42765243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 224 - 530
Target Start/End: Original strand, 42745604 - 42745899
Alignment:
| Q |
224 |
tgagcaacgaataatgaaaacatgagacaataagcttgcctgtttaattgcaagggtaggttcatgcagcaaaacaaaaagaagaagtgatattaaaaca |
323 |
Q |
| |
|
||||||| |||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||| ||| |
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| T |
42745604 |
tgagcaatgaataatgaaaatttgagaaaataatcttgcctgtttaattgcaagggtaggttcctgcagtaaaacaaaaagaagaagtgacattaacaca |
42745703 |
T |
|
| Q |
324 |
tgagaaatggatgaagacattgcttctctcatgaatgatgtttgttatgcaaaataaaatctcaaggatatgcaaagggtatgtgttttccctcacttat |
423 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||| | |||||| |||| | | |||||| ||||| ||||||| | ||| || ||||| |
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| T |
42745704 |
tgagaaatggatgaagacattgtttctctcatgaatgatgtttgtttttcaaaat-aaattttagggatatacaaagtgtatgtgctctccttcgcttat |
42745802 |
T |
|
| Q |
424 |
ataactaagtaagttatgtgattgttttttattcaaattccttttgtgagcagccattatgagtttgttatggagtcaactattgtggttaagttcattc |
523 |
Q |
| |
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|| | ||| || ||||||| |||||| |||||||| ||||| || |||||| ||||| |||||||||||||||||||| |||||||||| |
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| T |
42745803 |
at-----actaatttctgtgattaattttta-ccaaattcccaatgtgaacaaccatta----tttgtaatggagtcaactattgtggtcaagttcattc |
42745892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 224 - 426
Target Start/End: Original strand, 42754965 - 42755166
Alignment:
| Q |
224 |
tgagcaacgaataatgaaaacatgagacaataagcttgcctgtttaattgcaagggtaggttcatgcagcaaaacaaaaagaagaagtgatattaaaaca |
323 |
Q |
| |
|
||||||| |||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||| ||| |
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|
| T |
42754965 |
tgagcaatgaataatgaaaatttgagaaaataatcttgcctgtttaattgcaagggtaggttcctgcagtaaaacaaaaagaagaagtgacattaacaca |
42755064 |
T |
|
| Q |
324 |
tgagaaatggatgaagacattgcttctctcatgaatgatgtttgttatgcaaaataaaatctcaaggatatgcaaagggtatgtgttttccctcacttat |
423 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||| | |||||| |||| | | |||||| ||||| ||||||| | ||| || ||||| |
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| T |
42755065 |
tgagaaatggatgaagacattgtttctctcatgaatgatgtttgtttttcaaaat-aaattttagggatatacaaagtgtatgtgctctccttcgcttat |
42755163 |
T |
|
| Q |
424 |
ata |
426 |
Q |
| |
|
||| |
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|
| T |
42755164 |
ata |
42755166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 18 - 185
Target Start/End: Original strand, 42745368 - 42745539
Alignment:
| Q |
18 |
atcatagtgggagttcgttgcaagttcaaaatcaaatgatgaaggatttggaccgaaagaatgtgatcctaagtatacaatataggactaacgnnnnnnn |
117 |
Q |
| |
|
||||||||| ||||| || ||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
42745368 |
atcatagtgagagtttgtggcagattcaatatcaaatgatgaaggatttggaccatgagaatgtgatcctaagtatacaatataggactaacaaaaaaaa |
42745467 |
T |
|
| Q |
118 |
nnnca----catgattgattagtaaaccaaatatttaaacattaaaatatgaaaattagattatgatgagca |
185 |
Q |
| |
|
| ||||||||||| || |||||||| |||||||||||||||| ||||||||||||||||||||| |
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| T |
42745468 |
aaaaaaaacaatgattgattattagaccaaatagttaaacattaaaatataaaaattagattatgatgagca |
42745539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 303 - 368
Target Start/End: Original strand, 42765325 - 42765390
Alignment:
| Q |
303 |
agaagaagtgatattaaaacatgagaaatggatgaagacattgcttctctcatgaatgatgtttgt |
368 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42765325 |
agaagaagtgatattaacacatgacaaatggatgaagacattgcttctctcatgaatgatgtttgt |
42765390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 12 - 108
Target Start/End: Complemental strand, 42732841 - 42732745
Alignment:
| Q |
12 |
aagaatatcatagtgggagttcgttgcaagttcaaaatcaaatgatgaaggatttggaccgaaagaatgtgatcctaagtatacaatataggactaa |
108 |
Q |
| |
|
||||||||| ||||| ||||| || ||| ||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
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|
| T |
42732841 |
aagaatatcgtagtgagagtttgtggcagattcaatatcaaatgatgaaggatttggaccatatgaatgtgatcctaagtatacaatataggactaa |
42732745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 232 - 345
Target Start/End: Complemental strand, 42732396 - 42732282
Alignment:
| Q |
232 |
gaataatgaaaacatgagacaataagcttgcctgtttaattgcaagggtagg---ttcatgcagcaaaacaaaaagaagaagtgatattaaaacatgaga |
328 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||| || | || |||||| | |
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|
| T |
42732396 |
gaataatgaaaacttgagacaa--agcttgcctgtttaattgcaagggtaggatgttcctgcatcaaaacaaaaagaagaagtaatgtcaacacatgaca |
42732299 |
T |
|
| Q |
329 |
aatggatgaagacattg |
345 |
Q |
| |
|
||||||||| ||||||| |
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|
| T |
42732298 |
aatggatgatgacattg |
42732282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 18 - 185
Target Start/End: Original strand, 42754728 - 42754900
Alignment:
| Q |
18 |
atcatagtgggagttcgttgcaagttcaaaatcaaatgatgaaggatttggaccgaaagaatgtgatcctaagtatacaatataggactaacgnnnnnnn |
117 |
Q |
| |
|
||||||||| ||||| || ||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
42754728 |
atcatagtgagagtttgtggcagattcaatatcaaatgatgaaggatttggaccatgagaatgtgatcctaagtatacaatataggactaaacaaaaaaa |
42754827 |
T |
|
| Q |
118 |
nnncaca-----tgattgattagtaaaccaaatatttaaacattaaaatatgaaaattagattatgatgagca |
185 |
Q |
| |
|
| | |||||||||| || |||||||| |||||||||||||||| ||||||||||||||||||||| |
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|
| T |
42754828 |
aaaaaaaaacaatgattgattattagaccaaatagttaaacattaaaatataaaaattagattatgatgagca |
42754900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 42720141 - 42720230
Alignment:
| Q |
18 |
atcatagtgggagttcgttgcaagttcaaaatcaaatgatgaaggatttggaccgaaagaatgtgatcctaagtatacaatataggacta |
107 |
Q |
| |
|
||||||||| ||||| || ||| ||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
42720141 |
atcatagtgagagtttgtggcagattcaatatcaaatgatgaaggatctggaccatgagaatgtgatcctaagtatacaatataggacta |
42720230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 486 - 556
Target Start/End: Original strand, 42765385 - 42765454
Alignment:
| Q |
486 |
gtttgttatggagtcaactattgtggttaagttcattcttcatttccttcaacatttatgttaaataaata |
556 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||| |
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|
| T |
42765385 |
gtttgtaatggagtcaactattgtgattaagttcattcttcattt-tttaggcatttatgttaaataaata |
42765454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 478 - 530
Target Start/End: Complemental strand, 42732186 - 42732134
Alignment:
| Q |
478 |
cattatgagtttgttatggagtcaactattgtggttaagttcattcttcattt |
530 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| | ||||||| |||||| |
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|
| T |
42732186 |
cattatgagtttgtaatggagtcaactattgtggtaatattcattcctcattt |
42732134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 487 - 556
Target Start/End: Complemental strand, 23036635 - 23036566
Alignment:
| Q |
487 |
tttgttatggagtcaactattgtggttaagttcattcttcatttccttcaacatttatgttaaataaata |
556 |
Q |
| |
|
||||| |||||||||||| ||||||| ||||||||||||||||| || | ||| ||||||||||||||| |
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|
| T |
23036635 |
tttgtaatggagtcaactgttgtggtcaagttcattcttcatttttttaagcatatatgttaaataaata |
23036566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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