View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2687_low_40 (Length: 392)
Name: NF2687_low_40
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2687_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 20 - 378
Target Start/End: Complemental strand, 7938387 - 7938030
Alignment:
| Q |
20 |
atactgttgacgtttttccccatccttcaaaacctacaaacaataaaagggaaatataccagcagtcagttaatctgggatatgaaaatggatttaataa |
119 |
Q |
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| T |
7938387 |
atactgttgatgtttttccccatccttcaaaacctacaaacaataaa-gggaaatataccagcagtcagttaatctgggatacgaaaatggatttaataa |
7938289 |
T |
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| Q |
120 |
gagatatgaactgtcaatgtaaaacaattttccactgacatccaatgaaagtctactattttgccacatcaccccacatttgtaatgatattttgaaaat |
219 |
Q |
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| T |
7938288 |
gagatatgaactatcaatgtaaaacagttttccactgacatccaatgaaagtctactactttgccacatcaccccacatttgtaatgatattttgaaaat |
7938189 |
T |
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| Q |
220 |
ggtggtatgactatgccatggaaaaatggtagtctgcattggatgtcaatgtaaaactgttttacagtgacagtgtatgctcattagactctgaatttaa |
319 |
Q |
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| T |
7938188 |
ggtggtatgactatgccatggaaaaatggtagtctgcattggatgtcaatgtaaaactgttttacagcgacagtgtatgctcattagactttgaatttaa |
7938089 |
T |
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| Q |
320 |
gatagatatctggctctgggtagtatgacaaacaaaaacaaagatacacctcatatgcc |
378 |
Q |
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| T |
7938088 |
gatagatatctggctctgggtagtatgacaaacaaaaacaacgatacacctcatatgcc |
7938030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 20 - 105
Target Start/End: Complemental strand, 7925279 - 7925194
Alignment:
| Q |
20 |
atactgttgacgtttttccccatccttcaaaacctacaaacaataaaagggaaatataccagcagtcagttaatctgggatatgaa |
105 |
Q |
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| T |
7925279 |
atactgttgacgtttttccccatccttcaaaacctacaaacattaaaatggaaatataccagcagtcagttaattggggatatgaa |
7925194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 316 - 360
Target Start/End: Complemental strand, 7925190 - 7925146
Alignment:
| Q |
316 |
ttaagatagatatctggctctgggtagtatgacaaacaaaaacaa |
360 |
Q |
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| T |
7925190 |
ttaagatagatatttgactctgggaagtatgacaaacaaaaacaa |
7925146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 155 - 230
Target Start/End: Original strand, 13133161 - 13133236
Alignment:
| Q |
155 |
tgacatccaatgaaagtctactattttgccacatcaccccacatttgtaatgatattttgaaaatggtggtatgac |
230 |
Q |
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| T |
13133161 |
tgacacccaatgaaaatccactattttgccacatcaccccacttttgtaagggtattttgaaattggtggtatgac |
13133236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 179 - 230
Target Start/End: Original strand, 13458493 - 13458544
Alignment:
| Q |
179 |
tttgccacatcaccccacatttgtaatgatattttgaaaatggtggtatgac |
230 |
Q |
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| T |
13458493 |
tttgccacatcaccccacttttgtaaaggtattttgaaattggtggtatgac |
13458544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 194
Target Start/End: Original strand, 17511350 - 17511404
Alignment:
| Q |
140 |
aaaacaattttccactgacatccaatgaaagtctactattttgccacatcacccc |
194 |
Q |
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| T |
17511350 |
aaaacagttttacactgacatccaatgaaaatccactactttgccacatcacccc |
17511404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 157 - 216
Target Start/End: Complemental strand, 49250316 - 49250257
Alignment:
| Q |
157 |
acatccaatgaaagtctactattttgccacatcaccccacatttgtaatgatattttgaa |
216 |
Q |
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| T |
49250316 |
acatccaatgaaaatccactattttgcaacatcaccccactttcgtaaagttattttgaa |
49250257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 230
Target Start/End: Original strand, 533370 - 533446
Alignment:
| Q |
154 |
ctgacatccaatgaaagtctactattttgccacatcaccccacatttgtaatgatattttgaaaatggtggtatgac |
230 |
Q |
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|||||||||||||||| || |||||||| ||| ||||| || |||||||| ||||||||| |||||||||||| |
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| T |
533370 |
ctgacatccaatgaaaatcctttattttgctacaacacccaactcttgtaatgtcattttgaaactggtggtatgac |
533446 |
T |
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