View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2687_low_41 (Length: 379)

Name: NF2687_low_41
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2687_low_41
NF2687_low_41
[»] chr6 (14 HSPs)
chr6 (1-361)||(2923309-2923669)
chr6 (228-282)||(32186200-32186254)
chr6 (228-278)||(11060431-11060481)
chr6 (228-278)||(17078759-17078809)
chr6 (228-278)||(18051018-18051068)
chr6 (97-154)||(15511305-15511362)
chr6 (77-154)||(28575838-28575915)
chr6 (2-36)||(11060164-11060198)
chr6 (2-36)||(14843439-14843473)
chr6 (228-278)||(19350465-19350515)
chr6 (2-36)||(25351027-25351061)
chr6 (97-154)||(15987905-15987962)
chr6 (230-278)||(649637-649685)
chr6 (2-38)||(19350746-19350782)
[»] chr8 (8 HSPs)
chr8 (228-299)||(4331690-4331761)
chr8 (228-278)||(17659352-17659402)
chr8 (228-276)||(36157677-36157725)
chr8 (231-274)||(37165693-37165736)
chr8 (230-276)||(7452875-7452921)
chr8 (2-36)||(28992521-28992555)
chr8 (2-36)||(36025325-36025359)
chr8 (229-278)||(24794278-24794327)
[»] chr7 (7 HSPs)
chr7 (229-302)||(2820292-2820365)
chr7 (226-274)||(23887609-23887657)
chr7 (226-274)||(23898785-23898833)
chr7 (279-343)||(27601546-27601612)
chr7 (228-278)||(18671691-18671741)
chr7 (225-278)||(22819283-22819336)
chr7 (230-278)||(34232220-34232268)
[»] chr5 (6 HSPs)
chr5 (228-272)||(34338411-34338455)
chr5 (228-282)||(42259797-42259851)
chr5 (231-274)||(42039277-42039320)
chr5 (230-276)||(10486491-10486537)
chr5 (228-278)||(19513034-19513084)
chr5 (2-36)||(22094551-22094585)
[»] chr4 (16 HSPs)
chr4 (227-282)||(2072057-2072112)
chr4 (77-127)||(48805693-48805743)
chr4 (231-274)||(36183062-36183105)
chr4 (231-274)||(56337072-56337115)
chr4 (2-36)||(8935878-8935912)
chr4 (228-274)||(9690947-9690993)
chr4 (2-36)||(9691227-9691261)
chr4 (228-278)||(10562902-10562952)
chr4 (2-36)||(19115240-19115274)
chr4 (2-36)||(29553103-29553137)
chr4 (231-285)||(41382487-41382541)
chr4 (228-274)||(42778763-42778809)
chr4 (3-36)||(5893519-5893552)
chr4 (229-278)||(42953064-42953113)
chr4 (228-276)||(49925836-49925884)
chr4 (230-278)||(53486507-53486555)
[»] chr3 (10 HSPs)
chr3 (228-278)||(48192320-48192370)
chr3 (228-276)||(21740092-21740140)
chr3 (227-278)||(19875764-19875815)
chr3 (228-278)||(14864034-14864084)
chr3 (2-36)||(31675735-31675769)
chr3 (227-281)||(35537286-35537340)
chr3 (2-36)||(53942050-53942084)
chr3 (228-268)||(7164031-7164071)
chr3 (228-276)||(8130474-8130522)
chr3 (228-268)||(52250693-52250733)
[»] chr2 (8 HSPs)
chr2 (232-274)||(33583924-33583966)
chr2 (228-274)||(1380607-1380653)
chr2 (2-36)||(15018481-15018515)
chr2 (229-274)||(7301198-7301243)
chr2 (228-276)||(9668575-9668623)
chr2 (228-268)||(26146746-26146786)
chr2 (241-285)||(28598458-28598502)
chr2 (228-268)||(43310790-43310830)
[»] chr1 (7 HSPs)
chr1 (228-282)||(19014553-19014606)
chr1 (2-38)||(28358693-28358729)
chr1 (2-36)||(3544403-3544437)
chr1 (228-278)||(28358411-28358461)
chr1 (2-34)||(5809387-5809419)
chr1 (228-276)||(39430800-39430848)
chr1 (228-276)||(49264533-49264581)
[»] scaffold0061 (1 HSPs)
scaffold0061 (229-268)||(55193-55232)
[»] scaffold0017 (1 HSPs)
scaffold0017 (229-268)||(143402-143441)
[»] scaffold0912 (1 HSPs)
scaffold0912 (228-278)||(2442-2492)
[»] scaffold0029 (1 HSPs)
scaffold0029 (230-276)||(134425-134471)
[»] scaffold0002 (2 HSPs)
scaffold0002 (230-276)||(312252-312298)
scaffold0002 (230-276)||(327706-327752)
[»] scaffold0179 (2 HSPs)
scaffold0179 (228-276)||(8055-8103)
scaffold0179 (228-276)||(12989-13037)


Alignment Details
Target: chr6 (Bit Score: 328; Significance: 0; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 2923669 - 2923309
Alignment:
Q  1 ttttccttcttcaaagttccgtcaggtataatctctcttatattgaatctttaccgactaaannnnnnnagtgtgcgagtgaggatattagaaaattttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||    
T  2923669 ttttccttcttcaaagttccgtcaggtataatctctcttatattgaatctttaccgactaaatttttttagtgtgcgagtgaggatattagaaaattttc 2923570  T
Q  101 ttgaattggttggaataatatttgtttgaatagggataatggaggtttaggggtaagacgtttgacggaggatgttagtggacatagggggtttatattg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2923569 ttgaattggttggaataatatttgtttgaatagggataatggaggtttaggggtaagacgtttgacggaggatgttagtggacatagggggtttatattg 2923470  T
Q  201 gtggtggcttgttatgtttggtgaacaggaggttggaggttgggggacggagtgttttttcttggtggagggaggtagtgaaaatccatgatggggaagg 300  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  2923469 gtggtggcttgttatgtttggtgaacgggaggttggaggttgggggacggagtgtttcttcttggtggagggaggtagtgaaaatccttgatggggaagg 2923370  T
Q  301 tgtggagcgtggtgaggagagtattgggacgaaggttggtagtatcaataataataataat 361  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2923369 tgtggagcgtggtgaggagagtattgggacgaaggttggtagtatcaataataataataat 2923309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 228 - 282
Target Start/End: Complemental strand, 32186254 - 32186200
Alignment:
Q  228 ggaggttggaggttgggggacggagtgttttttcttggtggagggaggtagtgaa 282  Q
    ||||||||||||||||||| ||||||| || ||||||||||||||||||||||||    
T  32186254 ggaggttggaggttgggggccggagtgcttcttcttggtggagggaggtagtgaa 32186200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 278
Target Start/End: Original strand, 11060431 - 11060481
Alignment:
Q  228 ggaggttggaggttgggggacggagtgttttttcttggtggagggaggtag 278  Q
    ||||||||||||||||||| ||||||  || ||||||||||||||||||||    
T  11060431 ggaggttggaggttgggggccggagttgttcttcttggtggagggaggtag 11060481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 278
Target Start/End: Original strand, 17078759 - 17078809
Alignment:
Q  228 ggaggttggaggttgggggacggagtgttttttcttggtggagggaggtag 278  Q
    ||||||||||||||||||| ||||||  || ||||||||||||||||||||    
T  17078759 ggaggttggaggttgggggccggagttgttcttcttggtggagggaggtag 17078809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 278
Target Start/End: Original strand, 18051018 - 18051068
Alignment:
Q  228 ggaggttggaggttgggggacggagtgttttttcttggtggagggaggtag 278  Q
    ||||||||||||||||||| ||||||  || ||||||||||||||||||||    
T  18051018 ggaggttggaggttgggggccggagttgttcttcttggtggagggaggtag 18051068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 97 - 154
Target Start/End: Complemental strand, 15511362 - 15511305
Alignment:
Q  97 tttcttgaattggttggaataatatttgtttgaatagggataatggaggtttaggggt 154  Q
    ||||||| ||||||||| ||||||| ||||||| || |||| ||||||||||||||||    
T  15511362 tttcttggattggttggcataatatctgtttgactaaggattatggaggtttaggggt 15511305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 77 - 154
Target Start/End: Original strand, 28575838 - 28575915
Alignment:
Q  77 gagtgaggatattagaaaattttcttgaattggttggaataatatttgtttgaatagggataatggaggtttaggggt 154  Q
    ||||||||| | ||| ||| ||||||| ||||  ||||||||||||| ||||| || ||||||||| |||||||||||    
T  28575838 gagtgaggaaactaggaaaatttcttggattgaatggaataatatttatttgagtaaggataatggtggtttaggggt 28575915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 11060164 - 11060198
Alignment:
Q  2 tttccttcttcaaagttccgtcaggtataatctct 36  Q
    ||||||||||||||||||| |||||||||||||||    
T  11060164 tttccttcttcaaagttccatcaggtataatctct 11060198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 14843439 - 14843473
Alignment:
Q  2 tttccttcttcaaagttccgtcaggtataatctct 36  Q
    ||||||||||||||| |||||||||||||||||||    
T  14843439 tttccttcttcaaagctccgtcaggtataatctct 14843473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 278
Target Start/End: Complemental strand, 19350515 - 19350465
Alignment:
Q  228 ggaggttggaggttgggggacggagtgttttttcttggtggagggaggtag 278  Q
    ||||||||||||||||||| |||||||| |  |||||||||| ||||||||    
T  19350515 ggaggttggaggttgggggccggagtgtatcatcttggtggaaggaggtag 19350465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 25351061 - 25351027
Alignment:
Q  2 tttccttcttcaaagttccgtcaggtataatctct 36  Q
    ||||||||||||||| |||||||||||||||||||    
T  25351061 tttccttcttcaaagctccgtcaggtataatctct 25351027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 154
Target Start/End: Original strand, 15987905 - 15987962
Alignment:
Q  97 tttcttgaattggttggaataatatttgtttgaatagggataatggaggtttaggggt 154  Q
    ||||||| ||||||||| ||||||| ||||||| || |||| || |||||||||||||    
T  15987905 tttcttggattggttggcataatatatgtttgagtaaggattattgaggtttaggggt 15987962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 278
Target Start/End: Original strand, 649637 - 649685
Alignment:
Q  230 aggttggaggttgggggacggagtgttttttcttggtggagggaggtag 278  Q
    |||| |||||||||||| ||||||  || ||||||||||||||||||||    
T  649637 aggtgggaggttgggggccggagttgttcttcttggtggagggaggtag 649685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 19350782 - 19350746
Alignment:
Q  2 tttccttcttcaaagttccgtcaggtataatctctct 38  Q
    ||||||||||||||| ||||||||||||||| |||||    
T  19350782 tttccttcttcaaagctccgtcaggtataatttctct 19350746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 228 - 299
Target Start/End: Complemental strand, 4331761 - 4331690
Alignment:
Q  228 ggaggttggaggttgggggacggagtgttttttcttggtggagggaggtagtgaaaatccatgatggggaag 299  Q
    ||||||||||||||||||  |||||||||| |||| ||||||||||||||| ||||||||||||||||||||    
T  4331761 ggaggttggaggttggggaccggagtgtttcttctcggtggagggaggtagcgaaaatccatgatggggaag 4331690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 278
Target Start/End: Complemental strand, 17659402 - 17659352
Alignment:
Q  228 ggaggttggaggttgggggacggagtgttttttcttggtggagggaggtag 278  Q
    ||||||||||||||||||| ||||||  || ||||||||||||||||||||    
T  17659402 ggaggttggaggttgggggccggagttgttcttcttggtggagggaggtag 17659352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 276
Target Start/End: Complemental strand, 36157725 - 36157677
Alignment:
Q  228 ggaggttggaggttgggggacggagtgttttttcttggtggagggaggt 276  Q
    ||||||||||||||||||| ||||||  || ||||||||||||||||||    
T  36157725 ggaggttggaggttgggggccggagttgttcttcttggtggagggaggt 36157677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 231 - 274
Target Start/End: Original strand, 37165693 - 37165736
Alignment:
Q  231 ggttggaggttgggggacggagtgttttttcttggtggagggag 274  Q
    |||||||||||||||| |||||||||| | ||||||||||||||    
T  37165693 ggttggaggttgggggccggagtgtttctacttggtggagggag 37165736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 276
Target Start/End: Complemental strand, 7452921 - 7452875
Alignment:
Q  230 aggttggaggttgggggacggagtgttttttcttggtggagggaggt 276  Q
    ||||||||||||||||| ||||||||||  | |||||||||||||||    
T  7452921 aggttggaggttgggggccggagtgtttcgtgttggtggagggaggt 7452875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 28992521 - 28992555
Alignment:
Q  2 tttccttcttcaaagttccgtcaggtataatctct 36  Q
    |||||||||||||||| ||||||||||||||||||    
T  28992521 tttccttcttcaaagtcccgtcaggtataatctct 28992555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 36025359 - 36025325
Alignment:
Q  2 tttccttcttcaaagttccgtcaggtataatctct 36  Q
    ||||||||||||||| |||||||||||||||||||    
T  36025359 tttccttcttcaaagctccgtcaggtataatctct 36025325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 278
Target Start/End: Complemental strand, 24794327 - 24794278
Alignment:
Q  229 gaggttggaggttgggggacggagtgttttttcttggtggagggaggtag 278  Q
    |||||||||||| ||||| ||||||  || ||||||||||||||||||||    
T  24794327 gaggttggaggtggggggccggagttgttcttcttggtggagggaggtag 24794278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 229 - 302
Target Start/End: Original strand, 2820292 - 2820365
Alignment:
Q  229 gaggttggaggttgggggacggagtgttttttcttggtggagggaggtagtgaaaatccatgatggggaaggtg 302  Q
    |||||||||||||| |||||  ||||||| |||||||||||||||||||| |||||| | ||||||||||||||    
T  2820292 gaggttggaggttgtgggacaaagtgtttcttcttggtggagggaggtagcgaaaattcgtgatggggaaggtg 2820365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 226 - 274
Target Start/End: Complemental strand, 23887657 - 23887609
Alignment:
Q  226 caggaggttggaggttgggggacggagtgttttttcttggtggagggag 274  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  23887657 caggaggttggaggttgggggtcggagtgtttcttcttggtggagggag 23887609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 226 - 274
Target Start/End: Complemental strand, 23898833 - 23898785
Alignment:
Q  226 caggaggttggaggttgggggacggagtgttttttcttggtggagggag 274  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  23898833 caggaggttggaggttgggggtcggagtgtttcttcttggtggagggag 23898785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 279 - 343
Target Start/End: Original strand, 27601546 - 27601612
Alignment:
Q  279 tgaaaatccatgatggggaaggtgtggagcgtgg--tgaggagagtattgggacgaaggttggtagt 343  Q
    ||||||||| ||||||||||||||||||| ||||  |||  |||||||||||| |||||||||||||    
T  27601546 tgaaaatccgtgatggggaaggtgtggagggtggtttgataagagtattgggaggaaggttggtagt 27601612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 278
Target Start/End: Complemental strand, 18671741 - 18671691
Alignment:
Q  228 ggaggttggaggttgggggacggagtgttttttcttggtggagggaggtag 278  Q
    ||||||||||||| ||||| |||||||||| ||| |||||| |||||||||    
T  18671741 ggaggttggaggtggggggccggagtgtttcttcatggtggcgggaggtag 18671691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 278
Target Start/End: Original strand, 22819283 - 22819336
Alignment:
Q  225 acaggaggttggaggttgggggacggagtgttttttcttggtggagggaggtag 278  Q
    |||||||||||| ||||||||| |||||||||| ||  ||||||| ||||||||    
T  22819283 acaggaggttggcggttgggggccggagtgtttctttgtggtggaaggaggtag 22819336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 278
Target Start/End: Complemental strand, 34232268 - 34232220
Alignment:
Q  230 aggttggaggttgggggacggagtgttttttcttggtggagggaggtag 278  Q
    |||| |||||||||||| ||||||  || ||||||||||||||||||||    
T  34232268 aggtgggaggttgggggccggagttgttcttcttggtggagggaggtag 34232220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 228 - 272
Target Start/End: Complemental strand, 34338455 - 34338411
Alignment:
Q  228 ggaggttggaggttgggggacggagtgttttttcttggtggaggg 272  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||    
T  34338455 ggaggttggaggttgggggccggagtgtttcttcttggtggaggg 34338411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 282
Target Start/End: Complemental strand, 42259851 - 42259797
Alignment:
Q  228 ggaggttggaggttgggggacggagtgttttttcttggtggagggaggtagtgaa 282  Q
    |||| |||||||||||| | ||||||| || ||||||||||||||||||||||||    
T  42259851 ggagtttggaggttgggagccggagtgcttcttcttggtggagggaggtagtgaa 42259797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 231 - 274
Target Start/End: Original strand, 42039277 - 42039320
Alignment:
Q  231 ggttggaggttgggggacggagtgttttttcttggtggagggag 274  Q
    ||||||||| |||||| ||||||| |||||||||||||||||||    
T  42039277 ggttggaggatgggggccggagtgctttttcttggtggagggag 42039320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 276
Target Start/End: Original strand, 10486491 - 10486537
Alignment:
Q  230 aggttggaggttgggggacggagtgttttttcttggtggagggaggt 276  Q
    ||||||||||||||||| ||||||||||  | |||||||||||||||    
T  10486491 aggttggaggttgggggccggagtgtttcgtgttggtggagggaggt 10486537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 278
Target Start/End: Original strand, 19513034 - 19513084
Alignment:
Q  228 ggaggttggaggttgggggacggagtgttttttcttggtggagggaggtag 278  Q
    ||||||||||||| ||||| ||||||  || ||||||||||||||||||||    
T  19513034 ggaggttggaggtggggggccggagttgttcttcttggtggagggaggtag 19513084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 22094551 - 22094585
Alignment:
Q  2 tttccttcttcaaagttccgtcaggtataatctct 36  Q
    ||||||||||||||| |||||||||||||||||||    
T  22094551 tttccttcttcaaagctccgtcaggtataatctct 22094585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 282
Target Start/End: Complemental strand, 2072112 - 2072057
Alignment:
Q  227 aggaggttggaggttgggggacggagtgttttttcttggtggagggaggtagtgaa 282  Q
    |||||||| |||||||||||||||||||||| ||  |||||||||||| |||||||    
T  2072112 aggaggttagaggttgggggacggagtgtttcttgctggtggagggagttagtgaa 2072057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 127
Target Start/End: Complemental strand, 48805743 - 48805693
Alignment:
Q  77 gagtgaggatattagaaaattttcttgaattggttggaataatatttgttt 127  Q
    ||||||||||||||||||| |||| ||  ||||||||||||||||||||||    
T  48805743 gagtgaggatattagaaaagtttcatgggttggttggaataatatttgttt 48805693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 231 - 274
Target Start/End: Complemental strand, 36183105 - 36183062
Alignment:
Q  231 ggttggaggttgggggacggagtgttttttcttggtggagggag 274  Q
    |||||||||||||||| |||||||||| | ||||||||||||||    
T  36183105 ggttggaggttgggggccggagtgtttctacttggtggagggag 36183062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 231 - 274
Target Start/End: Original strand, 56337072 - 56337115
Alignment:
Q  231 ggttggaggttgggggacggagtgttttttcttggtggagggag 274  Q
    |||||||||||||||| |||||||||| | ||||||||||||||    
T  56337072 ggttggaggttgggggtcggagtgtttctacttggtggagggag 56337115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 8935912 - 8935878
Alignment:
Q  2 tttccttcttcaaagttccgtcaggtataatctct 36  Q
    ||||||||||||||| |||||||||||||||||||    
T  8935912 tttccttcttcaaagctccgtcaggtataatctct 8935878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 274
Target Start/End: Complemental strand, 9690993 - 9690947
Alignment:
Q  228 ggaggttggaggttgggggacggagtgttttttcttggtggagggag 274  Q
    ||||||||||||||||||| |||||||||| |  |||||||||||||    
T  9690993 ggaggttggaggttgggggccggagtgtttctcattggtggagggag 9690947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 9691261 - 9691227
Alignment:
Q  2 tttccttcttcaaagttccgtcaggtataatctct 36  Q
    |||||||||||||||||| ||||||||||||||||    
T  9691261 tttccttcttcaaagttctgtcaggtataatctct 9691227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 278
Target Start/End: Original strand, 10562902 - 10562952
Alignment:
Q  228 ggaggttggaggttgggggacggagtgttttttcttggtggagggaggtag 278  Q
    ||||||||||||||||||| | ||||  || ||||||||||||||||||||    
T  10562902 ggaggttggaggttgggggccagagttgttcttcttggtggagggaggtag 10562952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 19115274 - 19115240
Alignment:
Q  2 tttccttcttcaaagttccgtcaggtataatctct 36  Q
    ||||||||||||||| |||||||||||||||||||    
T  19115274 tttccttcttcaaagctccgtcaggtataatctct 19115240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 29553103 - 29553137
Alignment:
Q  2 tttccttcttcaaagttccgtcaggtataatctct 36  Q
    ||||||||||||||| |||||||||||||||||||    
T  29553103 tttccttcttcaaagctccgtcaggtataatctct 29553137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 285
Target Start/End: Complemental strand, 41382541 - 41382487
Alignment:
Q  231 ggttggaggttgggggacggagtgttttttcttggtggagggaggtagtgaaaat 285  Q
    |||||||||||||||| |||||||||| | |||||||||| ||| ||| ||||||    
T  41382541 ggttggaggttgggggccggagtgtttctacttggtggagagagttagcgaaaat 41382487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 274
Target Start/End: Complemental strand, 42778809 - 42778763
Alignment:
Q  228 ggaggttggaggttgggggacggagtgttttttcttggtggagggag 274  Q
    ||||||||||||||||||| ||||||  || ||||||||||||||||    
T  42778809 ggaggttggaggttgggggccggagttgttcttcttggtggagggag 42778763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 5893519 - 5893552
Alignment:
Q  3 ttccttcttcaaagttccgtcaggtataatctct 36  Q
    |||||||||||||||||||||| |||||||||||    
T  5893519 ttccttcttcaaagttccgtcaagtataatctct 5893552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 278
Target Start/End: Original strand, 42953064 - 42953113
Alignment:
Q  229 gaggttggaggttgggggacggagtgttttttcttggtggagggaggtag 278  Q
    |||||||||||| ||||| ||||||  || ||||||||||||||||||||    
T  42953064 gaggttggaggtggggggccggagttgttcttcttggtggagggaggtag 42953113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 276
Target Start/End: Original strand, 49925836 - 49925884
Alignment:
Q  228 ggaggttggaggttgggggacggagtgttttttcttggtggagggaggt 276  Q
    ||||||||||||||||||| ||||||  || |||||||||| |||||||    
T  49925836 ggaggttggaggttgggggccggagttgttcttcttggtggcgggaggt 49925884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 278
Target Start/End: Original strand, 53486507 - 53486555
Alignment:
Q  230 aggttggaggttgggggacggagtgttttttcttggtggagggaggtag 278  Q
    |||| |||||||||||| ||||||  || ||||||||||||||||||||    
T  53486507 aggtgggaggttgggggtcggagttgttcttcttggtggagggaggtag 53486555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 278
Target Start/End: Complemental strand, 48192370 - 48192320
Alignment:
Q  228 ggaggttggaggttgggggacggagtgttttttcttggtggagggaggtag 278  Q
    |||||||||||||||||||  ||||| ||| ||||||||||||||||||||    
T  48192370 ggaggttggaggttgggggttggagtttttcttcttggtggagggaggtag 48192320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 276
Target Start/End: Original strand, 21740092 - 21740140
Alignment:
Q  228 ggaggttggaggttgggggacggagtgttttttcttggtggagggaggt 276  Q
    ||||||||||||||||||| ||||||  || ||||||||||||||||||    
T  21740092 ggaggttggaggttgggggccggagttgttcttcttggtggagggaggt 21740140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 227 - 278
Target Start/End: Complemental strand, 19875815 - 19875764
Alignment:
Q  227 aggaggttggaggttgggggacggagtgttttttcttggtggagggaggtag 278  Q
    |||||||||||||||||||| |||||||| |  |||||||||| ||||||||    
T  19875815 aggaggttggaggttgggggccggagtgtatcatcttggtggaaggaggtag 19875764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 278
Target Start/End: Original strand, 14864034 - 14864084
Alignment:
Q  228 ggaggttggaggttgggggacggagtgttttttcttggtggagggaggtag 278  Q
    ||||||||||||| ||||| ||||||  || ||||||||||||||||||||    
T  14864034 ggaggttggaggtggggggccggagttgttcttcttggtggagggaggtag 14864084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 31675769 - 31675735
Alignment:
Q  2 tttccttcttcaaagttccgtcaggtataatctct 36  Q
    ||||||||||||||| |||||||||||||||||||    
T  31675769 tttccttcttcaaagctccgtcaggtataatctct 31675735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 281
Target Start/End: Complemental strand, 35537340 - 35537286
Alignment:
Q  227 aggaggttggaggttgggggacggagtgttttttcttggtggagggaggtagtga 281  Q
    ||||| |||||||||||||| ||||||| || || ||||||||||||||| ||||    
T  35537340 aggagattggaggttgggggccggagtgattcttattggtggagggaggtggtga 35537286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 53942084 - 53942050
Alignment:
Q  2 tttccttcttcaaagttccgtcaggtataatctct 36  Q
    ||||||||||||||| |||||||||||||||||||    
T  53942084 tttccttcttcaaagctccgtcaggtataatctct 53942050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 268
Target Start/End: Complemental strand, 7164071 - 7164031
Alignment:
Q  228 ggaggttggaggttgggggacggagtgttttttcttggtgg 268  Q
    ||||||| ||||||||||| |||||||||| ||||||||||    
T  7164071 ggaggttagaggttgggggccggagtgtttcttcttggtgg 7164031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 276
Target Start/End: Complemental strand, 8130522 - 8130474
Alignment:
Q  228 ggaggttggaggttgggggacggagtgttttttcttggtggagggaggt 276  Q
    ||||||||||||||||||| ||||||| || || |||||||| ||||||    
T  8130522 ggaggttggaggttgggggccggagtggttctttttggtggaaggaggt 8130474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 268
Target Start/End: Original strand, 52250693 - 52250733
Alignment:
Q  228 ggaggttggaggttgggggacggagtgttttttcttggtgg 268  Q
    ||||||||||||||||||| ||||||| || ||||||||||    
T  52250693 ggaggttggaggttgggggccggagtggttcttcttggtgg 52250733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 274
Target Start/End: Original strand, 33583924 - 33583966
Alignment:
Q  232 gttggaggttgggggacggagtgttttttcttggtggagggag 274  Q
    ||||||||||||||| |||||||||| ||||||||||||||||    
T  33583924 gttggaggttgggggtcggagtgtttcttcttggtggagggag 33583966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 274
Target Start/End: Complemental strand, 1380653 - 1380607
Alignment:
Q  228 ggaggttggaggttgggggacggagtgttttttcttggtggagggag 274  Q
    ||||||||||||||||||| ||||||  || ||||||||||||||||    
T  1380653 ggaggttggaggttgggggccggagttgttcttcttggtggagggag 1380607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 15018515 - 15018481
Alignment:
Q  2 tttccttcttcaaagttccgtcaggtataatctct 36  Q
    ||||||||||||||| |||||||||||||||||||    
T  15018515 tttccttcttcaaagctccgtcaggtataatctct 15018481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 274
Target Start/End: Complemental strand, 7301243 - 7301198
Alignment:
Q  229 gaggttggaggttgggggacggagtgttttttcttggtggagggag 274  Q
    ||||||||||||||||||||  ||||| | ||||||||||||||||    
T  7301243 gaggttggaggttgggggacatagtgtctcttcttggtggagggag 7301198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 276
Target Start/End: Original strand, 9668575 - 9668623
Alignment:
Q  228 ggaggttggaggttgggggacggagtgttttttcttggtggagggaggt 276  Q
    ||||||||||||||||||| ||||||  || || |||||||||||||||    
T  9668575 ggaggttggaggttgggggccggagttgttcttattggtggagggaggt 9668623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 268
Target Start/End: Complemental strand, 26146786 - 26146746
Alignment:
Q  228 ggaggttggaggttgggggacggagtgttttttcttggtgg 268  Q
    ||||||||||||||||||| ||||||| || ||||||||||    
T  26146786 ggaggttggaggttgggggccggagtggttattcttggtgg 26146746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 285
Target Start/End: Complemental strand, 28598502 - 28598458
Alignment:
Q  241 tgggggacggagtgttttttcttggtggagggaggtagtgaaaat 285  Q
    ||||||||||||||||| ||| ||||||| |||||||| ||||||    
T  28598502 tgggggacggagtgtttcttcgtggtggaaggaggtagcgaaaat 28598458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 268
Target Start/End: Complemental strand, 43310830 - 43310790
Alignment:
Q  228 ggaggttggaggttgggggacggagtgttttttcttggtgg 268  Q
    ||||||||||||||||||| ||||||| || ||||||||||    
T  43310830 ggaggttggaggttgggggccggagtggttcttcttggtgg 43310790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 282
Target Start/End: Original strand, 19014553 - 19014606
Alignment:
Q  228 ggaggttggaggttgggggacggagtgttttttcttggtggagggaggtagtgaa 282  Q
    ||||||||||||||||||  |||||||||| |||||||||||||||| |||||||    
T  19014553 ggaggttggaggttggggc-cggagtgtttcttcttggtggagggagatagtgaa 19014606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 28358729 - 28358693
Alignment:
Q  2 tttccttcttcaaagttccgtcaggtataatctctct 38  Q
    ||||||||||||||| |||||||||||||||||||||    
T  28358729 tttccttcttcaaagctccgtcaggtataatctctct 28358693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 3544403 - 3544437
Alignment:
Q  2 tttccttcttcaaagttccgtcaggtataatctct 36  Q
    ||||||||||||||| |||||||||||||||||||    
T  3544403 tttccttcttcaaagctccgtcaggtataatctct 3544437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 278
Target Start/End: Complemental strand, 28358461 - 28358411
Alignment:
Q  228 ggaggttggaggttgggggacggagtgttttttcttggtggagggaggtag 278  Q
    ||||||||||||||||||| |||||||| |  |||||||||||||| ||||    
T  28358461 ggaggttggaggttgggggccggagtgtctcatcttggtggagggaagtag 28358411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 5809419 - 5809387
Alignment:
Q  2 tttccttcttcaaagttccgtcaggtataatct 34  Q
    ||||||||||||||| |||||||||||||||||    
T  5809419 tttccttcttcaaagctccgtcaggtataatct 5809387  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 276
Target Start/End: Complemental strand, 39430848 - 39430800
Alignment:
Q  228 ggaggttggaggttgggggacggagtgttttttcttggtggagggaggt 276  Q
    ||||||||||||||||||| ||||||  || || |||||||||||||||    
T  39430848 ggaggttggaggttgggggccggagttgttcttattggtggagggaggt 39430800  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 276
Target Start/End: Original strand, 49264533 - 49264581
Alignment:
Q  228 ggaggttggaggttgggggacggagtgttttttcttggtggagggaggt 276  Q
    ||||||||||||||||||| ||||||  || || |||||||||||||||    
T  49264533 ggaggttggaggttgggggccggagttgttcttattggtggagggaggt 49264581  T

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Target: scaffold0061 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 229 - 268
Target Start/End: Complemental strand, 55232 - 55193
Alignment:
Q  229 gaggttggaggttgggggacggagtgttttttcttggtgg 268  Q
    |||||||||||||||||| ||||||| |||||||||||||    
T  55232 gaggttggaggttgggggccggagtgatttttcttggtgg 55193  T

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Target: scaffold0017 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 229 - 268
Target Start/End: Original strand, 143402 - 143441
Alignment:
Q  229 gaggttggaggttgggggacggagtgttttttcttggtgg 268  Q
    |||||||||||||||||| ||||||| |||||||||||||    
T  143402 gaggttggaggttgggggccggagtgatttttcttggtgg 143441  T

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Target: scaffold0912 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0912
Description:

Target: scaffold0912; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 278
Target Start/End: Original strand, 2442 - 2492
Alignment:
Q  228 ggaggttggaggttgggggacggagtgttttttcttggtggagggaggtag 278  Q
    ||||||||||||||||||| ||||||  || |||||||||| |||||||||    
T  2442 ggaggttggaggttgggggccggagttgttcttcttggtggcgggaggtag 2492  T

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Target: scaffold0029 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 276
Target Start/End: Original strand, 134425 - 134471
Alignment:
Q  230 aggttggaggttgggggacggagtgttttttcttggtggagggaggt 276  Q
    ||||||||||||||||| ||||||||||  | |||||||||||||||    
T  134425 aggttggaggttgggggccggagtgtttcatgttggtggagggaggt 134471  T

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Target: scaffold0002 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 276
Target Start/End: Original strand, 312252 - 312298
Alignment:
Q  230 aggttggaggttgggggacggagtgttttttcttggtggagggaggt 276  Q
    ||||||||||||||||| ||||||||||  | |||||||||||||||    
T  312252 aggttggaggttgggggccggagtgtttcatgttggtggagggaggt 312298  T

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Target: scaffold0002; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 276
Target Start/End: Original strand, 327706 - 327752
Alignment:
Q  230 aggttggaggttgggggacggagtgttttttcttggtggagggaggt 276  Q
    ||||||||||||||||| ||||||||||  | |||||||||||||||    
T  327706 aggttggaggttgggggccggagtgtttcatgttggtggagggaggt 327752  T

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Target: scaffold0179 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 276
Target Start/End: Complemental strand, 8103 - 8055
Alignment:
Q  228 ggaggttggaggttgggggacggagtgttttttcttggtggagggaggt 276  Q
    ||||||||||||||||||| ||||||  ||  |||||||||||||||||    
T  8103 ggaggttggaggttgggggccggagttgttcgtcttggtggagggaggt 8055  T

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Target: scaffold0179; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 276
Target Start/End: Complemental strand, 13037 - 12989
Alignment:
Q  228 ggaggttggaggttgggggacggagtgttttttcttggtggagggaggt 276  Q
    ||||||||||||||||||| ||||||  ||  |||||||||||||||||    
T  13037 ggaggttggaggttgggggccggagttgttcgtcttggtggagggaggt 12989  T

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