View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2687_low_42 (Length: 376)
Name: NF2687_low_42
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2687_low_42 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 33432790 - 33433149
Alignment:
| Q |
1 |
ggattagagccacatttgttgtgaatgaagacatgacgcacccacaaatcctccataagcaaaccaaccccttcttcaaaaactctgattgagttagtaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33432790 |
ggattagagccacatttgttgtgaatgaagacatgacgcacccacaaatcctccataagcaaaccaaccccttcttcaaaaactctgattgagttagtaa |
33432889 |
T |
|
| Q |
101 |
gattagaaccatcaatctcggacgaagaattagccttcaaattaaatatacaaaaactgttattattatgaga--aaaggaaagggggacacagtaataa |
198 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | || | ||||||||||||||||||||||||| |
|
|
| T |
33432890 |
gattagaacaatcaatctcggatgaagaattagccttcaaattaaatatacaaaaactgttattatgaggaaaggaaaggaaagggggacacagtaataa |
33432989 |
T |
|
| Q |
199 |
ccaggtaaggtaaggtcgattatatgttacctggattagaggacaactaacgttggcttcctggatgatctcaacagagggagttgtttccattccatac |
298 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
33432990 |
ccaggtaagttaaggtcgattatatgttacctggattagagaacaactaacgttggcttcctggatgatatcaccagagggagttgtttccattccatac |
33433089 |
T |
|
| Q |
299 |
tttttgaggtaagtttccattccaaacttagttacctcttcctcaaatgtctcaaggtag |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33433090 |
tttttgaggtaagtttccattccaaacttagttacctcttcctcaaatgtctcaaggtag |
33433149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 10 - 164
Target Start/End: Complemental strand, 33966681 - 33966527
Alignment:
| Q |
10 |
ccacatttgttgtgaatgaagacatgacgcacccacaaatcctccataagcaaaccaaccccttcttcaaaaactctgattgagttagtaagattagaac |
109 |
Q |
| |
|
||||| || ||||||||||||||||| ||||||||||||| ||||||||| ||| ||||||||| || ||| |||||||| ||| ||| |||||||||| |
|
|
| T |
33966681 |
ccacacttcttgtgaatgaagacatggcgcacccacaaattctccataagaaaatcaaccccttttttaaacactctgatcgagataggaagattagaat |
33966582 |
T |
|
| Q |
110 |
catcaatctcggacgaagaattagccttcaaattaaatatacaaaaactgttatt |
164 |
Q |
| |
|
|| ||||| |||| ||||||||||||||| |||| ||||||||| ||||||| |
|
|
| T |
33966581 |
agtccatctcaaacgatgaattagccttcaaaataaaaatacaaaaattgttatt |
33966527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University