View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2687_low_43 (Length: 376)

Name: NF2687_low_43
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2687_low_43
NF2687_low_43
[»] chr7 (4 HSPs)
chr7 (17-363)||(21235435-21235781)
chr7 (151-205)||(39415136-39415190)
chr7 (152-205)||(12845175-12845228)
chr7 (165-232)||(3203030-3203095)
[»] chr5 (4 HSPs)
chr5 (18-132)||(9361764-9361874)
chr5 (69-132)||(7805693-7805756)
chr5 (69-132)||(13582092-13582155)
chr5 (60-132)||(31987367-31987439)
[»] chr2 (3 HSPs)
chr2 (18-131)||(27557094-27557204)
chr2 (19-90)||(44683775-44683844)
chr2 (17-119)||(5771472-5771572)
[»] chr6 (3 HSPs)
chr6 (19-90)||(5600333-5600402)
chr6 (18-57)||(34253787-34253826)
chr6 (30-105)||(29326243-29326316)
[»] chr3 (6 HSPs)
chr3 (19-89)||(38002227-38002295)
chr3 (61-132)||(2616913-2616984)
chr3 (18-89)||(1740442-1740511)
chr3 (30-132)||(26929332-26929432)
chr3 (18-82)||(25023346-25023408)
chr3 (75-132)||(27604568-27604625)
[»] chr4 (6 HSPs)
chr4 (18-132)||(15451795-15451907)
chr4 (18-90)||(15499299-15499369)
chr4 (28-132)||(17360094-17360196)
chr4 (161-239)||(18751412-18751487)
chr4 (69-132)||(653608-653671)
chr4 (94-132)||(30563829-30563867)
[»] chr1 (1 HSPs)
chr1 (22-132)||(14724927-14725035)


Alignment Details
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 17 - 363
Target Start/End: Original strand, 21235435 - 21235781
Alignment:
Q  17 actagtgttggtatgacttaaaaatgtctcacattggagaggtacatactacctagtaagtgtttacataagtgagcggtgacctccaaaggtgttccct 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||| |||||||||||| ||||||||||    
T  21235435 actagtgttggtatgacttaaaaatgtctcacattggagaggtacatactacataataagtgtttatataagtgaggggtgacctccaagggtgttccct 21235534  T
Q  117 tggggtatccacttttcaacgtggaataatatgctttatcctgaatttgggaactcactgagattgcagtatctcattccactttgttgttttctttttt 216  Q
    | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||    
T  21235535 ttgggtatccacttttcaacgtggaataatatgttttatcctgaatttgggaactcactcagatcacagtatctcattccactttgttgttttctttttt 21235634  T
Q  217 caggtataagctattttgaagtcaatcggctccatatcacaatctctagagcttagggttcttatttttactttaatgtttccctcatttgtaagaggac 316  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21235635 caggtataagctattttgaagtcaatcggctccatatcacaatgtctagagcttagggttcttatttttactttaatgtttccctcatttgtaagaggac 21235734  T
Q  317 atcaaatggtatttaagttctatgttagttttaaaacctcgtgcttc 363  Q
    ||||||||||||||||||||||| ||||||| ||||||| |||||||    
T  21235735 atcaaatggtatttaagttctattttagtttcaaaaccttgtgcttc 21235781  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 205
Target Start/End: Original strand, 39415136 - 39415190
Alignment:
Q  151 tttatcctgaatttgggaactcactgagattgcagtatctcattccactttgttg 205  Q
    ||||||| || ||||||||||||||||||| | |||||||||| ||||| |||||    
T  39415136 tttatcccgagtttgggaactcactgagatcgtagtatctcatcccactctgttg 39415190  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 205
Target Start/End: Complemental strand, 12845228 - 12845175
Alignment:
Q  152 ttatcctgaatttgggaactcactgagattgcagtatctcattccactttgttg 205  Q
    |||||| || ||||||||||||||||||| | |||||||||| ||||| |||||    
T  12845228 ttatcccgagtttgggaactcactgagatcgtagtatctcatcccactatgttg 12845175  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 232
Target Start/End: Original strand, 3203030 - 3203095
Alignment:
Q  165 gggaactcactgagattgcagtatctcattccactttgttgttttcttttttcaggtataagctattt 232  Q
    |||||||||||||||||| |||  ||||| ||||| | |||||| |  ||||||||||||||||||||    
T  3203030 gggaactcactgagattgtagtgcctcatcccactctcttgtttcc--ttttcaggtataagctattt 3203095  T

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Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 132
Target Start/End: Original strand, 9361764 - 9361874
Alignment:
Q  18 ctagtgttggtatgacttaaaaatgtctcacattggagaggtacatactacctagtaagtgtttacataagtgagcggtgacctccaaaggtgttccctt 117  Q
    ||||||||||||||||||||||||||  ||||||||||||  |||||||||||||||||| |||| |||||||   |||||  ||||| ||||| |||||    
T  9361764 ctagtgttggtatgacttaaaaatgtgccacattggagag--acatactacctagtaagtatttatataagtggagggtga--tccaagggtgtgccctt 9361859  T
Q  118 ggggtatccactttt 132  Q
    | |||||||||||||    
T  9361860 gtggtatccactttt 9361874  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 69 - 132
Target Start/End: Complemental strand, 7805756 - 7805693
Alignment:
Q  69 ctagtaagtgtttacataagtgagcggtgacctccaaaggtgttcccttggggtatccactttt 132  Q
    |||||||||||||| ||||| ||   ||||||||||| ||||| ||||||||||| ||||||||    
T  7805756 ctagtaagtgtttatataagggaagagtgacctccaagggtgtgcccttggggtacccactttt 7805693  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 69 - 132
Target Start/End: Original strand, 13582092 - 13582155
Alignment:
Q  69 ctagtaagtgtttacataagtgagcggtgacctccaaaggtgttcccttggggtatccactttt 132  Q
    |||||||||||||| ||||| ||   ||||||||||| ||||| ||||||||||| ||||||||    
T  13582092 ctagtaagtgtttatataagggaagagtgacctccaagggtgtgcccttggggtacccactttt 13582155  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 132
Target Start/End: Complemental strand, 31987439 - 31987367
Alignment:
Q  60 acatactacctagtaagtgtttacataagtgagcggtgacctccaaaggtgttcccttggggtatccactttt 132  Q
    ||||||| ||||||||||||||| ||||| |   |||||||||||| | ||| ||||||||||| ||| ||||    
T  31987439 acatactgcctagtaagtgtttatataagcggagggtgacctccaaggatgtacccttggggtacccattttt 31987367  T

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Target: chr2 (Bit Score: 47; Significance: 9e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 18 - 131
Target Start/End: Complemental strand, 27557204 - 27557094
Alignment:
Q  18 ctagtgttggtatgacttaaaaatgtctcacattggagaggtacatactacctagtaagtgtttacataagtgagcggtgacctccaaaggtgttccctt 117  Q
    ||||||||||||||| ||||||||||| ||||||||||||   |||||| ||||||||||||||| ||||||| | ||||  || ||| ||||||| |||    
T  27557204 ctagtgttggtatgaattaaaaatgtcccacattggagag--tcatactgcctagtaagtgtttatataagtg-ggggtggtctacaagggtgttctctt 27557108  T
Q  118 ggggtatccacttt 131  Q
    |||||| |||||||    
T  27557107 ggggtacccacttt 27557094  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 44683844 - 44683775
Alignment:
Q  19 tagtgttggtatgacttaaaaatgtctcacattggagaggtacatactacctagtaagtgtttacataagtg 90  Q
    ||||||||||||||||||||||||| ||||||||||||    |||| ||| ||||||||||||| |||||||    
T  44683844 tagtgttggtatgacttaaaaatgtttcacattggaga--accataatacttagtaagtgtttatataagtg 44683775  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 5771572 - 5771472
Alignment:
Q  17 actagtgttggtatgactt-aaaaatgtctcacattggagaggtacatactacctagtaagtgtttacataagtgagcggtgacctccaaaggtgttccc 115  Q
    |||||||||||||||| || |||||| |||||||||||||||  ||||||    ||||||||||||| |||||| || ||| |||||||| ||||| |||    
T  5771572 actagtgttggtatgaattgaaaaatatctcacattggagag--acataccttttagtaagtgtttatataagt-aggggttacctccaagggtgtgccc 5771476  T
Q  116 ttgg 119  Q
    ||||    
T  5771475 ttgg 5771472  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 5600333 - 5600402
Alignment:
Q  19 tagtgttggtatgacttaaaaatgtctcacattggagaggtacatactacctagtaagtgtttacataagtg 90  Q
    |||||||||||||||||||||||||| ||||||| | ||  ||||||||||||||||||||||| |||||||    
T  5600333 tagtgttggtatgacttaaaaatgtcccacattgaaaag--acatactacctagtaagtgtttatataagtg 5600402  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 34253787 - 34253826
Alignment:
Q  18 ctagtgttggtatgacttaaaaatgtctcacattggagag 57  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  34253787 ctagtattggtatgacttaaaaatgtcccacattggagag 34253826  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 105
Target Start/End: Complemental strand, 29326316 - 29326243
Alignment:
Q  30 tgacttaaaaatgtctcacattggagaggtacatactacctagtaagtgtttacataagtgagcggtgacctccaa 105  Q
    |||||||||||||||||||||||| ||||  || || | |||| ||||||||| ||||| | | ||||||||||||    
T  29326316 tgacttaaaaatgtctcacattggtgagg--cacaccaactagcaagtgtttatataagggtggggtgacctccaa 29326243  T

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Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 38002295 - 38002227
Alignment:
Q  19 tagtgttggtatgacttaaaaatgtctcacattggagaggtacatactacctagtaagtgtttacataagt 89  Q
    |||||||||||||||||| ||||||||||||||||||||   |||||||| ||||||||||||| ||||||    
T  38002295 tagtgttggtatgacttacaaatgtctcacattggagag--tcatactacgtagtaagtgtttatataagt 38002227  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 132
Target Start/End: Original strand, 2616913 - 2616984
Alignment:
Q  61 catactacctagtaagtgtttacataagtgagcggtgacctccaaaggtgttcccttggggtatccactttt 132  Q
    |||||||||||||||||||||| |||||||||  ||| ||| ||| ||||| ||||||||||| ||||||||    
T  2616913 catactacctagtaagtgtttatataagtgaggagtggcctacaacggtgtgcccttggggtacccactttt 2616984  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 1740442 - 1740511
Alignment:
Q  18 ctagtgttggtatgacttaaaaatgtctcacattggagaggtacatactacctagtaagtgtttacataagt 89  Q
    ||||||||||||||||||||||||||  |||||||||| |   ||||||||||||||| |||||| ||||||    
T  1740442 ctagtgttggtatgacttaaaaatgttccacattggagtg--tcatactacctagtaattgtttatataagt 1740511  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 132
Target Start/End: Complemental strand, 26929432 - 26929332
Alignment:
Q  30 tgacttaaaaatgtctcacattggagaggtacatactacctagtaagtgtttacataagtgagcggtgacctccaaaggtgttcccttggggtatccact 129  Q
    |||||||||||||| ||||||||| ||| ||||  | | |||| ||||||||| ||||| | | ||||||||||||  |||| ||||||||||| |||||    
T  26929432 tgacttaaaaatgtttcacattggtgagttaca--ccaactagcaagtgtttatataagggtggggtgacctccaagtgtgtgcccttggggtacccact 26929335  T
Q  130 ttt 132  Q
    |||    
T  26929334 ttt 26929332  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 25023346 - 25023408
Alignment:
Q  18 ctagtgttggtatgacttaaaaatgtctcacattggagaggtacatactacctagtaagtgttta 82  Q
    ||||||| |||||||||||||||||   |||||||||| |  |||||||||||||||||||||||    
T  25023346 ctagtgtgggtatgacttaaaaatgatccacattggaggg--acatactacctagtaagtgttta 25023408  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 75 - 132
Target Start/End: Original strand, 27604568 - 27604625
Alignment:
Q  75 agtgtttacataagtgagcggtgacctccaaaggtgttcccttggggtatccactttt 132  Q
    |||||||| ||||||||| |||||||||||| |||||||||||| || | ||||||||    
T  27604568 agtgtttatataagtgagaggtgacctccaagggtgttcccttgtggcacccactttt 27604625  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 132
Target Start/End: Complemental strand, 15451907 - 15451795
Alignment:
Q  18 ctagtgttggtatgacttaaaaatgtctcacattggagaggtacatactacctagtaagtgtttacataagtgagcggtgacctccaaaggtgttccctt 117  Q
    ||||||||||||| ||||||||||||| |||||||||| |||  ||||||||||||||||||||| ||||||| |   || |||  || ||||| |||||    
T  15451907 ctagtgttggtataacttaaaaatgtcccacattggag-ggt-gatactacctagtaagtgtttatataagtggggaatggcctaaaagggtgtgccctt 15451810  T
Q  118 ggggtatccactttt 132  Q
    |||||| ||||||||    
T  15451809 ggggtacccactttt 15451795  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 15499369 - 15499299
Alignment:
Q  18 ctagtgttggtatgacttaaaaatgtctcacattggagaggtacatactacctagtaagtgtttacataagtg 90  Q
    ||||||||||||||||||||||||||| |||||||||| |  |  |||||| ||||||||||||| |||||||    
T  15499369 ctagtgttggtatgacttaaaaatgtcccacattggagggcga--tactacttagtaagtgtttatataagtg 15499299  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 132
Target Start/End: Complemental strand, 17360196 - 17360094
Alignment:
Q  28 tatgacttaaaaatgtctcacattggagaggtacatactacctagtaagtgtttacataagtgagcggtgacctccaaaggtgttcccttggggtatcca 127  Q
    |||||||||| ||||||  |||||| ||||  |||||||| ||||||| |||||| |||| || | |||| | ||||||||||| ||||||||||| |||    
T  17360196 tatgacttaagaatgtcctacattgaagag--acatactatctagtaaatgtttatataaatggggggtggcttccaaaggtgtgcccttggggtaccca 17360099  T
Q  128 ctttt 132  Q
    |||||    
T  17360098 ctttt 17360094  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 161 - 239
Target Start/End: Complemental strand, 18751487 - 18751412
Alignment:
Q  161 atttgggaactcactgagattgcagtatctcattccactttgttgttttcttttttcaggtataagctattttgaagtc 239  Q
    |||| ||||||||||||||| |   |||||||| ||| | ||||| |||||||||||||||||||| ||||||||||||    
T  18751487 atttaggaactcactgagatcg---tatctcatcccattatgttgatttcttttttcaggtataagttattttgaagtc 18751412  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 69 - 132
Target Start/End: Complemental strand, 653671 - 653608
Alignment:
Q  69 ctagtaagtgtttacataagtgagcggtgacctccaaaggtgttcccttggggtatccactttt 132  Q
    |||||||||||||| ||||| ||   ||||||||||| ||||| ||||||||||| ||||||||    
T  653671 ctagtaagtgtttatataagggaagagtgacctccaagggtgtgcccttggggtacccactttt 653608  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 132
Target Start/End: Original strand, 30563829 - 30563867
Alignment:
Q  94 ggtgacctccaaaggtgttcccttggggtatccactttt 132  Q
    |||||||||||| ||||| ||||||||||||||||||||    
T  30563829 ggtgacctccaagggtgtgcccttggggtatccactttt 30563867  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 132
Target Start/End: Complemental strand, 14725035 - 14724927
Alignment:
Q  22 tgttggtatgacttaaaaatgtctcacattggagaggtacatactacctagtaagtgtttacataagtgagcggtgacctccaaaggtgttcccttgggg 121  Q
    |||| |||||||||| ||| ||| |||||| |||||   |||||||||| ||||||||||| ||||||| | |||||||| ||||| ||| || ||||||    
T  14725035 tgtttgtatgacttataaaggtcccacatttgagagt--catactacctggtaagtgtttatataagtggggggtgacctacaaagatgtgccattgggg 14724938  T
Q  122 tatccactttt 132  Q
    || ||||||||    
T  14724937 tacccactttt 14724927  T

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