View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2687_low_45 (Length: 366)

Name: NF2687_low_45
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2687_low_45
NF2687_low_45
[»] chr6 (5 HSPs)
chr6 (22-216)||(3564781-3564979)
chr6 (305-355)||(3564588-3564638)
chr6 (77-184)||(3815104-3815212)
chr6 (77-173)||(9161134-9161232)
chr6 (266-296)||(3564701-3564731)
[»] chr8 (5 HSPs)
chr8 (77-179)||(45071270-45071372)
chr8 (77-179)||(13160707-13160809)
chr8 (79-178)||(5135318-5135418)
chr8 (77-179)||(36720801-36720904)
chr8 (77-179)||(39461021-39461126)
[»] chr4 (8 HSPs)
chr4 (77-179)||(5648264-5648366)
chr4 (77-165)||(25629068-25629157)
chr4 (77-173)||(30639391-30639487)
chr4 (77-179)||(7385503-7385606)
chr4 (108-179)||(11054206-11054276)
chr4 (77-179)||(6430653-6430755)
chr4 (77-179)||(40915834-40915936)
chr4 (90-179)||(9832353-9832441)
[»] chr2 (4 HSPs)
chr2 (77-179)||(14444734-14444836)
chr2 (77-173)||(23397777-23397872)
chr2 (100-179)||(12023969-12024048)
chr2 (79-179)||(8455345-8455446)
[»] chr7 (10 HSPs)
chr7 (98-179)||(19426937-19427019)
chr7 (79-179)||(35334845-35334944)
chr7 (77-160)||(38604551-38604634)
chr7 (77-160)||(40463901-40463984)
chr7 (77-179)||(18512480-18512582)
chr7 (100-173)||(23419724-23419798)
chr7 (100-173)||(33871960-33872033)
chr7 (97-173)||(2662982-2663057)
chr7 (77-173)||(32758272-32758367)
chr7 (100-172)||(42476885-42476956)
[»] chr1 (5 HSPs)
chr1 (77-184)||(46247980-46248088)
chr1 (100-179)||(32632607-32632686)
chr1 (63-179)||(18724558-18724675)
chr1 (100-160)||(31382264-31382324)
chr1 (141-173)||(45812627-45812659)
[»] chr5 (4 HSPs)
chr5 (100-179)||(41014324-41014403)
chr5 (77-162)||(7097787-7097872)
chr5 (79-179)||(24448895-24448996)
chr5 (91-179)||(35710318-35710405)
[»] scaffold0036 (1 HSPs)
scaffold0036 (96-179)||(35063-35148)
[»] scaffold0187 (2 HSPs)
scaffold0187 (90-179)||(10090-10178)
scaffold0187 (90-179)||(20418-20506)
[»] chr3 (1 HSPs)
chr3 (77-173)||(22609799-22609895)


Alignment Details
Target: chr6 (Bit Score: 170; Significance: 4e-91; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 22 - 216
Target Start/End: Complemental strand, 3564979 - 3564781
Alignment:
Q  22 ggttaacaaaataaaatataattgtagcaaacaaagaaacag----gtgcacaaggcaaccgcatacgtagagtccgagaaagggtctcaccatctggtg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  3564979 ggttaacaaaataaaatataattgtagcaaacaaagaaacagtctggtgcacaaggcaaccacatacgtagagtccgagaaagggtctcaccatctggtg 3564880  T
Q  118 tattgcacacagtcttattctatttttacacaagagactgttttcagaacttgaactcgtgatatttttaatcaacttttaccgttgtgtaggctcctc 216  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  3564879 tattgcacacagtcttattctatttttacacaagagactattttcagaacttgaactcgtgacatttttaatcaacttttaccgttgtgtaggctcctc 3564781  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 305 - 355
Target Start/End: Complemental strand, 3564638 - 3564588
Alignment:
Q  305 gataccattcacagtcatttcactctcccttgtttcggtaaaaccattcat 355  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3564638 gataccattcacagtcatttcactctcccttgtttcggtaaaaccattcat 3564588  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 184
Target Start/End: Original strand, 3815104 - 3815212
Alignment:
Q  77 ccgcatacgtagagtccgagaaagggtctcaccatctggtgtattgcacacagtcttattcta-tttttacacaagagactgttttcagaacttgaactc 175  Q
    |||||||||||| || || ||||||||| |||||| |||||||||| || ||||| ||   || ||||||||||| || |||||| ||| |||||||| |    
T  3815104 ccgcatacgtagggttcgggaaagggtcccaccatttggtgtattgtacgcagtcgtaccatattttttacacaatagtctgtttccaggacttgaaccc 3815203  T
Q  176 gtgatattt 184  Q
    |||| ||||    
T  3815204 gtgacattt 3815212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 77 - 173
Target Start/End: Complemental strand, 9161232 - 9161134
Alignment:
Q  77 ccgcatacgtagagtccgagaaagggtctcaccatc--tggtgtattgcacacagtcttattctatttttacacaagagactgttttcagaacttgaac 173  Q
    ||||||||| || ||||||||| ||||| ||||||   || ||||||| || ||| |||| ||| |||||||||||||| |||||| ||| ||||||||    
T  9161232 ccgcatacgcagggtccgagaaggggtcccaccattattgatgtattgtacgcagccttactctgtttttacacaagaggctgtttccaggacttgaac 9161134  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 296
Target Start/End: Complemental strand, 3564731 - 3564701
Alignment:
Q  266 cttcactggtttaaaacatcgttacacttga 296  Q
    |||||||||||||||||||||||||||||||    
T  3564731 cttcactggtttaaaacatcgttacacttga 3564701  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 77 - 179
Target Start/End: Complemental strand, 45071372 - 45071270
Alignment:
Q  77 ccgcatacgtagagtccgagaaagggtctcaccatctggtgtattgcacacagtcttattctatttttacacaagagactgttttcagaacttgaactcg 176  Q
    ||||||||| |  ||||| ||| ||||| |||||| |||||||||| || ||| ||||  || |||||||||||||| |||||| |||||||||||| ||    
T  45071372 ccgcatacgcaaggtccgggaaggggtcccaccatttggtgtattgtacgcagccttaccctgtttttacacaagaggctgtttccagaacttgaacccg 45071273  T
Q  177 tga 179  Q
    |||    
T  45071272 tga 45071270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 179
Target Start/End: Complemental strand, 13160809 - 13160707
Alignment:
Q  77 ccgcatacgtagagtccgagaaagggtctcaccatctggtgtattgcacacagtcttattctatttttacacaagagactgttttcagaacttgaactcg 176  Q
    ||||||||| || ||||| ||| ||||| |||||| |||||||||| || ||| ||||  || |||||||||||||| ||||||  || |||||||| ||    
T  13160809 ccgcatacgcagggtccgggaaggggtcccaccatttggtgtattgtacgcagccttaccctgtttttacacaagaggctgtttctaggacttgaacccg 13160710  T
Q  177 tga 179  Q
    |||    
T  13160709 tga 13160707  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 178
Target Start/End: Original strand, 5135318 - 5135418
Alignment:
Q  79 gcatacgtagagtccgagaaagggtctcaccatctggtgtattgcacacagtcttattctatttt-tacacaagagactgttttcagaacttgaactcgt 177  Q
    ||||||| || ||||| ||| ||||| |||||| |||||||||| |||||| ||||  || |||| |||||||||| |||||| ||| |||||||| |||    
T  5135318 gcatacgcagggtccgggaaggggtcccaccatttggtgtattgtacacagccttaccctcttttttacacaagaggctgtttccaggacttgaacccgt 5135417  T
Q  178 g 178  Q
    |    
T  5135418 g 5135418  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 77 - 179
Target Start/End: Complemental strand, 36720904 - 36720801
Alignment:
Q  77 ccgcatacgtagagtccgagaaagggtctcaccatctggtgtattgcacacagtcttattctattttt-acacaagagactgttttcagaacttgaactc 175  Q
    ||||||||| || ||||| ||| ||||| |||||| |||||||||| || ||| ||||  || ||||| ||||||||| |||||| ||| |||||||| |    
T  36720904 ccgcatacgcagggtccgggaaggggtcccaccatttggtgtattgtacgcagccttaccctgttttttacacaagaggctgtttccaggacttgaaccc 36720805  T
Q  176 gtga 179  Q
    ||||    
T  36720804 gtga 36720801  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 179
Target Start/End: Original strand, 39461021 - 39461126
Alignment:
Q  77 ccgcatacgtagagtccgagaaagggtctcaccatc--tggtgtattgcacacagtcttattctatttt-tacacaagagactgttttcagaacttgaac 173  Q
    ||||||||| || ||||| ||| ||||||||||||   |||||||||| || ||| |||| ||| |||| |||||||||| |||||| ||| ||||||||    
T  39461021 ccgcatacgcagggtccgggaaggggtctcaccattattggtgtattgtacgcagccttactctgttttttacacaagaggctgtttccaggacttgaac 39461120  T
Q  174 tcgtga 179  Q
     |||||    
T  39461121 ccgtga 39461126  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 77 - 179
Target Start/End: Complemental strand, 5648366 - 5648264
Alignment:
Q  77 ccgcatacgtagagtccgagaaagggtctcaccatctggtgtattgcacacagtcttattctatttttacacaagagactgttttcagaacttgaactcg 176  Q
    ||||||||| || ||||| ||| ||||| |||||| |||||||||| || ||| ||||  || |||||||||||||| |||||| ||| |||||||| ||    
T  5648366 ccgcatacgcagggtccgggaaggggtcccaccatttggtgtattgtacgcagccttaccctgtttttacacaagaggctgtttccaggacttgaacccg 5648267  T
Q  177 tga 179  Q
    |||    
T  5648266 tga 5648264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 77 - 165
Target Start/End: Complemental strand, 25629157 - 25629068
Alignment:
Q  77 ccgcatacgtagagtccgagaaagggtctcaccatctggtgtattgcacacagtcttattctattttt-acacaagagactgttttcaga 165  Q
    ||||||| |||| ||||| ||| ||||| |||||| |||||||||| |||||| ||||  |||||||| |||||||||||||||| ||||    
T  25629157 ccgcatatgtagggtccgggaaggggtcccaccatttggtgtattgtacacagccttaccctattttttacacaagagactgtttccaga 25629068  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 77 - 173
Target Start/End: Complemental strand, 30639487 - 30639391
Alignment:
Q  77 ccgcatacgtagagtccgagaaagggtctcaccatctggtgtattgcacacagtcttattctatttttacacaagagactgttttcagaacttgaac 173  Q
    ||||||| | || ||||| ||| |||||||||||| |||||||||| || ||| ||||  || |||||||||||||| |||||| ||| ||||||||    
T  30639487 ccgcatatgcagggtccgggaaggggtctcaccatttggtgtattgtacgcagccttaccctgtttttacacaagagtctgtttccaggacttgaac 30639391  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 77 - 179
Target Start/End: Original strand, 7385503 - 7385606
Alignment:
Q  77 ccgcatacgtagagtccgagaaagggtctcaccatctggtgtattgcacacagtcttattcta-tttttacacaagagactgttttcagaacttgaactc 175  Q
    ||||||||  || ||||| ||||||||| |||||| ||||||||||||||||  ||||  ||| |||||||||| ||| |||||| |||  ||||||| |    
T  7385503 ccgcatacacagggtccgggaaagggtcccaccatttggtgtattgcacacaaccttaccctattttttacacatgaggctgtttccagggcttgaaccc 7385602  T
Q  176 gtga 179  Q
    ||||    
T  7385603 gtga 7385606  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 108 - 179
Target Start/End: Original strand, 11054206 - 11054276
Alignment:
Q  108 ccatctggtgtattgcacacagtcttattctatttttacacaagagactgttttcagaacttgaactcgtga 179  Q
    |||| |||||||||| || ||||||||  || |||| |||||||||||||||||||| |||||||| |||||    
T  11054206 ccatttggtgtattgtacgcagtcttaccctgtttt-acacaagagactgttttcaggacttgaacccgtga 11054276  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 179
Target Start/End: Original strand, 6430653 - 6430755
Alignment:
Q  77 ccgcatacgtagagtccgagaaagggtctcaccatctggtgtattgcacacagtcttattctatttttacacaagagactgttttcagaacttgaactcg 176  Q
    ||||||||| || ||||| |||  |||| |||||| |||||||||| || ||| ||||  || |||||||||||||| |||||| ||  |||||||| ||    
T  6430653 ccgcatacgcagggtccgggaagtggtcccaccatttggtgtattgtacgcagccttaccctgtttttacacaagaggctgtttccatgacttgaacccg 6430752  T
Q  177 tga 179  Q
    |||    
T  6430753 tga 6430755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 179
Target Start/End: Complemental strand, 40915936 - 40915834
Alignment:
Q  77 ccgcatacgtagagtccgagaaagggtctcaccatctggtgtattgcacacagtcttattctatttttacacaagagactgttttcagaacttgaactcg 176  Q
    ||||||||| || ||||| ||| || || |||||| |||||||||| || ||| ||||   | |||||||||||||| |||||| ||| |||||||| ||    
T  40915936 ccgcatacgcagggtccgggaagggctcccaccatttggtgtattgtacgcagccttaccttgtttttacacaagaggctgtttccaggacttgaacccg 40915837  T
Q  177 tga 179  Q
    |||    
T  40915836 tga 40915834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 179
Target Start/End: Original strand, 9832353 - 9832441
Alignment:
Q  90 gtccgagaaagggtctcaccatctggtgtattgcacacagtcttattctatttttacacaagagactgttttcagaacttgaactcgtga 179  Q
    ||||| ||| ||||| |||||| |||||||||| || ||| ||||  || |||| ||||||||| |||||||||| |||||||| |||||    
T  9832353 gtccgggaaggggtcccaccatttggtgtattgtacgcagccttaccctgtttt-acacaagaggctgttttcaggacttgaacccgtga 9832441  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 77 - 179
Target Start/End: Complemental strand, 14444836 - 14444734
Alignment:
Q  77 ccgcatacgtagagtccgagaaagggtctcaccatctggtgtattgcacacagtcttattctatttttacacaagagactgttttcagaacttgaactcg 176  Q
    ||||||||| || ||||| ||| ||||| |||||| |||||||| | |||||| ||||  || |||||||||||||| |||||| ||| |||||||| ||    
T  14444836 ccgcatacgcagggtccgggaaggggtcccaccatttggtgtatcgtacacagccttaccctgtttttacacaagaggctgtttccaggacttgaacccg 14444737  T
Q  177 tga 179  Q
    |||    
T  14444736 tga 14444734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 173
Target Start/End: Complemental strand, 23397872 - 23397777
Alignment:
Q  77 ccgcatacgtagagtccgagaaagggtctcaccatctggtgtattgcacacagtcttattctatttttacacaagagactgttttcagaacttgaac 173  Q
    ||||||| |||| ||||||||| ||||| |||||| |||||||||| ||  || ||||  ||||||| ||||||||| |||||| ||| ||||||||    
T  23397872 ccgcatatgtagggtccgagaaggggtcccaccatttggtgtattgtacgtagccttaccctatttt-acacaagaggctgtttccaggacttgaac 23397777  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 100 - 179
Target Start/End: Original strand, 12023969 - 12024048
Alignment:
Q  100 gggtctcaccatctggtgtattgcacacagtcttattctatttttacacaagagactgttttcagaacttgaactcgtga 179  Q
    ||||| |||||| |||||||||| || ||| ||||  || |||||||||||||| |||||| ||| |||||||| |||||    
T  12023969 gggtcccaccatttggtgtattgtacgcagccttaccctgtttttacacaagaggctgtttccaggacttgaacccgtga 12024048  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 179
Target Start/End: Original strand, 8455345 - 8455446
Alignment:
Q  79 gcatacgtagagtccgagaaagggtctcaccatctggtgtattgcacacagtcttattctat-ttttacacaagagactgttttcagaacttgaactcgt 177  Q
    ||||||| || ||||| ||| ||||| |||||| |||||||||| || ||| ||||  || | ||||||||||||| |||||| ||| |||||||| |||    
T  8455345 gcatacgcagggtccgggaaggggtcccaccatttggtgtattgtacgcagccttaccctgtgttttacacaagaggctgtttccaggacttgaacccgt 8455444  T
Q  178 ga 179  Q
    ||    
T  8455445 ga 8455446  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 179
Target Start/End: Original strand, 19426937 - 19427019
Alignment:
Q  98 aagggtctcaccatctggtgtattgcacacagtcttattctatttt-tacacaagagactgttttcagaacttgaactcgtga 179  Q
    ||||||| |||||| |||||||||| || ||||||||  ||||||| |||||||||| |||||| ||| |||||||| |||||    
T  19426937 aagggtcccaccatttggtgtattgtacgcagtcttaccctattttttacacaagaggctgtttccaggacttgaacccgtga 19427019  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 179
Target Start/End: Original strand, 35334845 - 35334944
Alignment:
Q  79 gcatacgtagagtccgagaaagggtctcaccatctggtgtattgcacacagtcttattctatttttacacaagagactgttttcagaacttgaactcgtg 178  Q
    ||||||| || ||||| ||| ||||| ||||||  ||||||||| |||||||||||  || |||||  ||| |||||||||| ||| |||||||||||||    
T  35334845 gcatacgcagggtccgggaaggggtcccaccattcggtgtattgtacacagtcttaccctgttttt-tacacgagactgtttccaggacttgaactcgtg 35334943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 77 - 160
Target Start/End: Complemental strand, 38604634 - 38604551
Alignment:
Q  77 ccgcatacgtagagtccgagaaagggtctcaccatctggtgtattgcacacagtcttattctatttttacacaagagactgttt 160  Q
    ||||||||| || |||||  || |||||||||||| |||||||||| || ||| ||||  || |||||||||||||| ||||||    
T  38604634 ccgcatacgcagggtccggaaaggggtctcaccatttggtgtattgtacgcagccttaccctgtttttacacaagaggctgttt 38604551  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 77 - 160
Target Start/End: Complemental strand, 40463984 - 40463901
Alignment:
Q  77 ccgcatacgtagagtccgagaaagggtctcaccatctggtgtattgcacacagtcttattctatttttacacaagagactgttt 160  Q
    ||||||||| || ||||||||| ||||| |||||| |||||||||  || ||| ||||  |  |||||||||||||||||||||    
T  40463984 ccgcatacgcagggtccgagaaggggtcccaccatttggtgtattatacgcagccttacccagtttttacacaagagactgttt 40463901  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 179
Target Start/End: Original strand, 18512480 - 18512582
Alignment:
Q  77 ccgcatacgtagagtccgagaaagggtctcaccatctggtgtattgcacacagtcttattctatttttacacaagagactgttttcagaacttgaactcg 176  Q
    ||||||||| || ||||| ||| ||||| ||||||  ||||||||| || ||| ||||  ||||||||||||||||   ||||| ||| |||||||| ||    
T  18512480 ccgcatacgcagggtccgggaaggggtcccaccattcggtgtattgtacgcagccttaccctatttttacacaagatgttgtttccaggacttgaacccg 18512579  T
Q  177 tga 179  Q
    |||    
T  18512580 tga 18512582  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 173
Target Start/End: Original strand, 23419724 - 23419798
Alignment:
Q  100 gggtctcaccatctggtgtattgcacacagtcttattctatttt-tacacaagagactgttttcagaacttgaac 173  Q
    ||||| |||||| |||||||||| || ||||||||  || |||| |||||||||| |||||| ||||||||||||    
T  23419724 gggtcccaccatttggtgtattgtacgcagtcttaccctgttttttacacaagaggctgtttccagaacttgaac 23419798  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 173
Target Start/End: Original strand, 33871960 - 33872033
Alignment:
Q  100 gggtctcaccatctggtgtattgcacacagtcttattctatttttacacaagagactgttttcagaacttgaac 173  Q
    ||||| |||||| |||||||||| || ||| ||||| || ||||||||||||||  ||||| ||| ||||||||    
T  33871960 gggtcccaccatttggtgtattgtacgcagccttatcctgtttttacacaagaggttgtttccaggacttgaac 33872033  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 173
Target Start/End: Original strand, 2662982 - 2663057
Alignment:
Q  97 aaagggtctcaccatctggtgtattgcacacagtcttattctatttttacacaagagactgttttcagaacttgaac 173  Q
    |||||||| |||||| |||||||||| || ||| ||||  ||||||| ||||||||| |||||| ||| ||||||||    
T  2662982 aaagggtcccaccatttggtgtattgtacgcagccttaccctatttt-acacaagaggctgtttccaggacttgaac 2663057  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 173
Target Start/End: Complemental strand, 32758367 - 32758272
Alignment:
Q  77 ccgcatacgtagagtccgagaaagggtctcaccatctggtgtattgcacacagtcttattctatttttacacaagagactgttttcagaacttgaac 173  Q
    ||||||| | || ||||| ||| ||||| |||||| |||||||||| |||||| ||||  || |||| ||||||||| |||||| ||| ||||||||    
T  32758367 ccgcatatgcagggtccgggaaggggtcccaccatttggtgtattgtacacagccttaccctgtttt-acacaagaggctgtttccaggacttgaac 32758272  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 172
Target Start/End: Complemental strand, 42476956 - 42476885
Alignment:
Q  100 gggtctcaccatctggtgtattgcacacagtcttattctatttttacacaagagactgttttcagaacttgaa 172  Q
    ||||| |||||| |||||||||| || ||| ||||  ||  |||||||||||||||||||| |||||||||||    
T  42476956 gggtcccaccatttggtgtattgtacgcagccttac-cttgttttacacaagagactgtttccagaacttgaa 42476885  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 184
Target Start/End: Original strand, 46247980 - 46248088
Alignment:
Q  77 ccgcatacgtagagtccgagaaagggtctcaccatctggtgtattgcacacagtcttattctatttt-tacacaagagactgttttcagaacttgaactc 175  Q
    ||||||||| || ||||| ||| ||||| |||||| |||||||||| || ||||||||  || |||| |||||||||| |||||| ||  |||||||| |    
T  46247980 ccgcatacgcagggtccgggaaggggtcccaccatttggtgtattgtacgcagtcttaccctgttttttacacaagaggctgtttccaagacttgaaccc 46248079  T
Q  176 gtgatattt 184  Q
    |||| ||||    
T  46248080 gtgacattt 46248088  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 100 - 179
Target Start/End: Original strand, 32632607 - 32632686
Alignment:
Q  100 gggtctcaccatctggtgtattgcacacagtcttattctatttttacacaagagactgttttcagaacttgaactcgtga 179  Q
    ||||| |||||| |||||||||| || ||| ||||  || |||||||||||||| |||||| ||| |||||||| |||||    
T  32632607 gggtcccaccatttggtgtattgtacgcagccttaccctgtttttacacaagaggctgtttccaggacttgaacccgtga 32632686  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 179
Target Start/End: Original strand, 18724558 - 18724675
Alignment:
Q  63 ggtgcacaaggcaaccgcatacgtagagtccgagaaagggtctcaccatctggtgtattgcacacagtcttattctatttt-tacacaagagactgtttt 161  Q
    ||||||||| ||  ||||||| |||| ||||| ||| ||||| ||  || |||||||||| |||||| ||||  || |||| |||||||||| ||||||     
T  18724558 ggtgcacaaagctcccgcatatgtagggtccgggaaggggtcccaagatttggtgtattgtacacagccttaccctgttttttacacaagaggctgtttc 18724657  T
Q  162 cagaacttgaactcgtga 179  Q
    ||| |||||||| |||||    
T  18724658 caggacttgaacccgtga 18724675  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 160
Target Start/End: Original strand, 31382264 - 31382324
Alignment:
Q  100 gggtctcaccatctggtgtattgcacacagtcttattctatttttacacaagagactgttt 160  Q
    ||||| |||||| |||||||||| || ||| ||||| || |||||||||||||| ||||||    
T  31382264 gggtcccaccatttggtgtattgtacgcagccttatcctgtttttacacaagaggctgttt 31382324  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 173
Target Start/End: Original strand, 45812627 - 45812659
Alignment:
Q  141 ttttacacaagagactgttttcagaacttgaac 173  Q
    |||||||||||||||||||||||| ||||||||    
T  45812627 ttttacacaagagactgttttcaggacttgaac 45812659  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 100 - 179
Target Start/End: Complemental strand, 41014403 - 41014324
Alignment:
Q  100 gggtctcaccatctggtgtattgcacacagtcttattctatttttacacaagagactgttttcagaacttgaactcgtga 179  Q
    ||||| |||||| |||||||||| || ||| ||||  || |||||||||||||| |||||| ||| |||||||| |||||    
T  41014403 gggtcccaccatttggtgtattgtacgcagccttaccctgtttttacacaagaggctgtttccaggacttgaacccgtga 41014324  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 162
Target Start/End: Original strand, 7097787 - 7097872
Alignment:
Q  77 ccgcatacgtagagtccgagaaagggtctcaccatctggtgtattgcacacagtcttattctatttttacacaagagactgttttc 162  Q
    ||||||||| || || || ||| |||||||||||| |||||||||| || ||  ||||  || |||||||||||||| ||||||||    
T  7097787 ccgcatacgcagggttcgggaaggggtctcaccatttggtgtattgtacgcaaccttaccctgtttttacacaagaggctgttttc 7097872  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 179
Target Start/End: Complemental strand, 24448996 - 24448895
Alignment:
Q  79 gcatacgtagagtccgagaaagggtctcaccatctggtgtattgcacacagtcttattctattttt-acacaagagactgttttcagaacttgaactcgt 177  Q
    ||||||| || ||||| ||| ||||| |||||| |||||||||| || ||| ||||  |||||||| |||||| || |||||| ||| |||||||| |||    
T  24448996 gcatacgcagggtccgggaaggggtcccaccatttggtgtattgtacgcagccttaccctattttttacacaaaaggctgtttccaggacttgaacccgt 24448897  T
Q  178 ga 179  Q
    ||    
T  24448896 ga 24448895  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 179
Target Start/End: Complemental strand, 35710405 - 35710318
Alignment:
Q  91 tccgagaaagggtctcaccatctggtgtattgcacacagtcttattctatttttacacaagagactgttttcagaacttgaactcgtga 179  Q
    |||| ||| ||||| |||||| |||||||||| || ||| ||||  ||||||| ||||||||| |||||| ||| |||||||| |||||    
T  35710405 tccgggaaggggtcccaccatttggtgtattgaacgcagccttaccctatttt-acacaagaggctgtttccaggacttgaacccgtga 35710318  T

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Target: scaffold0036 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 179
Target Start/End: Original strand, 35063 - 35148
Alignment:
Q  96 gaaagggtctcaccatctggtgtattgcacacagtcttattctatttttacac--aagagactgttttcagaacttgaactcgtga 179  Q
    ||||||||| |||||| |||||||||| || ||| ||||  || |||| ||||  |||||||||||||||| |||||||| |||||    
T  35063 gaaagggtcccaccatttggtgtattgtacgcagccttaccctgttttcacacacaagagactgttttcaggacttgaacccgtga 35148  T

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Target: scaffold0187 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 179
Target Start/End: Original strand, 10090 - 10178
Alignment:
Q  90 gtccgagaaagggtctcaccatctggtgtattgcacacagtcttattctatttttacacaagagactgttttcagaacttgaactcgtga 179  Q
    ||||| ||| ||||| ||| || |||||||||| || |||||||| ||| |||| ||||||||| |||||| ||| |||||||| |||||    
T  10090 gtccgggaaggggtcccactatttggtgtattgtacgcagtcttactctgtttt-acacaagaggctgtttccaggacttgaacccgtga 10178  T

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Target: scaffold0187; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 179
Target Start/End: Original strand, 20418 - 20506
Alignment:
Q  90 gtccgagaaagggtctcaccatctggtgtattgcacacagtcttattctatttttacacaagagactgttttcagaacttgaactcgtga 179  Q
    ||||| ||| ||||| ||| || |||||||||| || |||||||| ||| |||| ||||||||| |||||| ||| |||||||| |||||    
T  20418 gtccgggaaggggtcccactatttggtgtattgtacgcagtcttactctgtttt-acacaagaggctgtttccaggacttgaacccgtga 20506  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 173
Target Start/End: Complemental strand, 22609895 - 22609799
Alignment:
Q  77 ccgcatacgtagagtccgagaaagggtctcaccatctggtgtattgcacacagtcttattctatttttacacaagagactgttttcagaacttgaac 173  Q
    ||||||||| |  ||||| ||| ||||| |||||| |||||||||| || ||| ||||  || |||||||||||||| |||||| ||  ||||||||    
T  22609895 ccgcatacgcaaggtccgggaaggggtcccaccatttggtgtattgtacgcagccttaccctgtttttacacaagaggctgtttccaagacttgaac 22609799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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