View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2687_low_49 (Length: 347)
Name: NF2687_low_49
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2687_low_49 |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 4 - 331
Target Start/End: Original strand, 2641509 - 2641838
Alignment:
| Q |
4 |
gacaccgacgcctatcagacaccacgacacgcctagtcttagaaatgtccgtgctttataatatattaatcattctcctattgtctcaccatatttttcc |
103 |
Q |
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|||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
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| T |
2641509 |
gacaccgacgtctatcgaacaccacgacacgcctagtcttagaagtgtccgtgctttatagtatattaatcattctcctattgtctcaccatccttttcc |
2641608 |
T |
|
| Q |
104 |
ctcatttatcgtcnnnnnnnnctc--cttcaaataagataagcaaataacttcaaagaagttaatggaatgggttcatcaagggaaatcttgtttggtca |
201 |
Q |
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||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2641609 |
ctcatttatcgtcttttttttctctccttcaaataagataagcaaataacttcaaagaagttaatggaatgggttcatcaagggaaatcttgtttggtca |
2641708 |
T |
|
| Q |
202 |
atgaaaacgtcccttgttgaaaaagaagaatcacaaatattcgacctcaatattgataggataatgaggttttcaaggggataatattttctaatcagca |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2641709 |
atgaaaacgtcccttgttgaaaaagaagaatcacaaatattcgaccgcaatattgataggataatgaggttttcaaggggataatattttctaatcagca |
2641808 |
T |
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| Q |
302 |
ttgttatcatactaataggacacattaatt |
331 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
2641809 |
ttgttatcatactaataggacacattaatt |
2641838 |
T |
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