View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2687_low_5 (Length: 680)

Name: NF2687_low_5
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2687_low_5
NF2687_low_5
[»] chr2 (7 HSPs)
chr2 (19-462)||(8252560-8253014)
chr2 (459-669)||(8252321-8252535)
chr2 (318-388)||(34217580-34217650)
chr2 (318-387)||(19548187-19548256)
chr2 (318-387)||(35027946-35028015)
chr2 (348-420)||(8010264-8010336)
chr2 (348-388)||(38576341-38576381)
[»] chr1 (5 HSPs)
chr1 (289-384)||(11199937-11200032)
chr1 (318-388)||(50391936-50392006)
chr1 (318-400)||(11766010-11766092)
chr1 (318-384)||(43834538-43834604)
chr1 (323-387)||(4392238-4392302)
[»] chr5 (3 HSPs)
chr5 (318-380)||(27856172-27856234)
chr5 (330-418)||(28296042-28296130)
chr5 (367-403)||(1953206-1953242)
[»] chr7 (5 HSPs)
chr7 (318-388)||(45100227-45100297)
chr7 (289-386)||(33730099-33730196)
chr7 (322-388)||(27938807-27938873)
chr7 (306-341)||(2017099-2017134)
chr7 (318-388)||(24903736-24903806)
[»] chr4 (7 HSPs)
chr4 (323-388)||(11307335-11307400)
chr4 (327-414)||(33814721-33814808)
chr4 (348-388)||(26986701-26986741)
chr4 (318-388)||(11307624-11307694)
chr4 (326-376)||(20090569-20090619)
chr4 (359-388)||(11269360-11269389)
chr4 (348-388)||(47680694-47680734)
[»] chr6 (4 HSPs)
chr6 (322-388)||(22612283-22612349)
chr6 (319-393)||(14221276-14221350)
chr6 (348-388)||(6250162-6250202)
chr6 (348-388)||(18089945-18089985)
[»] chr8 (3 HSPs)
chr8 (318-383)||(5073025-5073090)
chr8 (323-372)||(4840566-4840615)
chr8 (348-388)||(19263311-19263351)
[»] chr3 (5 HSPs)
chr3 (323-383)||(43978625-43978685)
chr3 (321-388)||(42059840-42059907)
chr3 (326-387)||(23161955-23162016)
chr3 (348-388)||(50442-50482)
chr3 (319-387)||(51677343-51677411)
[»] scaffold0548 (1 HSPs)
scaffold0548 (318-388)||(4113-4183)


Alignment Details
Target: chr2 (Bit Score: 380; Significance: 0; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 19 - 462
Target Start/End: Complemental strand, 8253014 - 8252560
Alignment:
Q  19 gttttgtaatgagataaaatagatatctttttcccttgtccttgggaatcaaaaagcagaaaggttcaagagaataatatcaggaatctccctagctttt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8253014 gttttgtaatgagataaaatagatatctttttcccttgtccttgggaatcaaaaagcagaaaggttcaagagaataatatcaggaatctccctagctttt 8252915  T
Q  119 cttacaataccctataaatggaaaaattatatttattccaaaaattgaaattccttattgaattaccaactactatagccttggaaatccgagacaagac 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8252914 cttacaataccctataaatggaaaaattatatttattccaaaaattgaaattccttattgaattaccaactactatagccttggaaatccgagacaagac 8252815  T
Q  219 taatattgagaaaagacaaaattttgagtggtgatgggcaatgtagcaccaatg-ttttgttgggttt----------tgattaagtcttacatcgttta 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||| |||          ||||||||||||||||||||||    
T  8252814 taatattgagaaaagacaaaattttgagtggtgatgggcaatgtagaaccgatgtttttgttggatttcaagtgtcagtgattaagtcttacatcgttta 8252715  T
Q  308 taaataggttaaatgttggatatataagagaggtaacttgtatacctaatgccttaaagttttggatggagatgtggtgtcgctctctcttatgatcttg 407  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  8252714 taaataggttaaatgttggatatataagagaggtaactcgtatacctaacgccttaaagttttggatggagatgtggtgtcgccctctcttatgatcttg 8252615  T
Q  408 gaacattagccctgttatttctctagttgaccctggtctccccaacatgtttcga 462  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  8252614 gaacattagccttgttatttctctagttgaccctgggctccccaacatgtttcga 8252560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 459 - 669
Target Start/End: Complemental strand, 8252535 - 8252321
Alignment:
Q  459 tcgacaaaatcacaatgagttgatgtgattttgacaaaaactacgcgcatgtttagtatcat----ggtgattttgttagaatcatgatcagttaacatg 554  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||| |||||||||||||||||| ||||||||||    
T  8252535 tcgacaaaatcacaatgagttgatgtgattttgacaaaaactacgcgcatgtttagtatcatatatggtggttttgttagaatcatgatgagttaacatg 8252436  T
Q  555 atattnnnnnnncattgtctagtttttgaaaatcatggtgattcaccgtgattctaaaaagctcattgtaataacatgtatgcaatacattttgcaactt 654  Q
    |||||       ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||    
T  8252435 atattcaaaaaacattgtctagtttttgaaaatcatggtgattcaccgtgattataacaagctcattgtaataacaagtatgcaatacattttgcaactt 8252336  T
Q  655 tgccaaatgatgatg 669  Q
    |||||||||| ||||    
T  8252335 tgccaaatgaagatg 8252321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 318 - 388
Target Start/End: Original strand, 34217580 - 34217650
Alignment:
Q  318 aaatgttggatatataagagaggtaacttgtatacctaatgccttaaagttttggatggagatgtggtgtc 388  Q
    ||||| ||||||||||||| |||| |||| |||||||||  |||||| ||||||||  |||||||||||||    
T  34217580 aaatggtggatatataagataggtgacttatatacctaactccttaaggttttggaatgagatgtggtgtc 34217650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 318 - 387
Target Start/End: Original strand, 19548187 - 19548256
Alignment:
Q  318 aaatgttggatatataagagaggtaacttgtatacctaatgccttaaagttttggatggagatgtggtgt 387  Q
    |||||||||||||||||||||||  ||   |||| |||||| ||||| ||||||| ||||||||||||||    
T  19548187 aaatgttggatatataagagaggagacccatatatctaatgtcttaaggttttgggtggagatgtggtgt 19548256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 318 - 387
Target Start/End: Original strand, 35027946 - 35028015
Alignment:
Q  318 aaatgttggatatataagagaggtaacttgtatacctaatgccttaaagttttggatggagatgtggtgt 387  Q
    |||||||||||||||||||||||  |||| ||||||| ||   | |||||||||||| ||||||||||||    
T  35027946 aaatgttggatatataagagaggagacttatatacctgatttttaaaagttttggatagagatgtggtgt 35028015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 348 - 420
Target Start/End: Original strand, 8010264 - 8010336
Alignment:
Q  348 tatacctaatgccttaaagttttggatggagatgtggtgtcgctctctcttatgatcttggaacattagccct 420  Q
    |||||||||||||||||| |||||||||||  ||||||||| | || ||||||| || |||| ||||| ||||    
T  8010264 tatacctaatgccttaaaattttggatggatgtgtggtgtctcactttcttatggtcctggagcattaaccct 8010336  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 348 - 388
Target Start/End: Original strand, 38576341 - 38576381
Alignment:
Q  348 tatacctaatgccttaaagttttggatggagatgtggtgtc 388  Q
    |||||||  ||| ||||||||||||||||||||||||||||    
T  38576341 tatacctcctgctttaaagttttggatggagatgtggtgtc 38576381  T

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Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 289 - 384
Target Start/End: Original strand, 11199937 - 11200032
Alignment:
Q  289 ttaagtcttacatcgtttataaataggttaaatgttggatatataagagaggtaacttgtatacctaatgccttaaagttttggatggagatgtgg 384  Q
    |||||||| |||| |  ||| ||||||| |||||||||||||||||||||||| |||  ||| ||||||||||||| ||||||| |||||||||||    
T  11199937 ttaagtctcacattgcctatgaataggtaaaatgttggatatataagagaggtgactcatatgcctaatgccttaaggttttgggtggagatgtgg 11200032  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 318 - 388
Target Start/End: Complemental strand, 50392006 - 50391936
Alignment:
Q  318 aaatgttggatatataagagaggtaacttgtatacctaatgccttaaagttttggatggagatgtggtgtc 388  Q
    ||||||||||||||||||| | || |||  ||||||||||| ||||| ||||||||||||||||| |||||    
T  50392006 aaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtc 50391936  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 318 - 400
Target Start/End: Complemental strand, 11766092 - 11766010
Alignment:
Q  318 aaatgttggatatataagagaggtaacttgtatacctaatgccttaaagttttggatggagatgtggtgtcgctctctcttat 400  Q
    ||||||||||| |||||||||| | || | |  |||||||||||||| ||||||| ||||||||||| ||| | |||||||||    
T  11766092 aaatgttggatttataagagagttgacctattaacctaatgccttaaggttttgggtggagatgtggcgtctccctctcttat 11766010  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 318 - 384
Target Start/End: Original strand, 43834538 - 43834604
Alignment:
Q  318 aaatgttggatatataagagaggtaacttgtatacctaatgccttaaagttttggatggagatgtgg 384  Q
    |||||||| ||||||||||||||  ||   ||||||||||| ||||| ||||| |||||||||||||    
T  43834538 aaatgttgaatatataagagaggggacccatatacctaatgtcttaaggtttttgatggagatgtgg 43834604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 323 - 387
Target Start/End: Complemental strand, 4392302 - 4392238
Alignment:
Q  323 ttggatatataagagaggtaacttgtatacctaatgccttaaagttttggatggagatgtggtgt 387  Q
    |||||||||||| |||||  ||   ||||||| |||||||||  |||||||||||||||||||||    
T  4392302 ttggatatataacagaggagacccatatacctgatgccttaagattttggatggagatgtggtgt 4392238  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 318 - 380
Target Start/End: Original strand, 27856172 - 27856234
Alignment:
Q  318 aaatgttggatatataagagaggtaacttgtatacctaatgccttaaagttttggatggagat 380  Q
    ||||||||||||||||||||||||  ||  ||||||||||||||||||||||||| |||||||    
T  27856172 aaatgttggatatataagagaggtggctcatatacctaatgccttaaagttttgggtggagat 27856234  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 330 - 418
Target Start/End: Complemental strand, 28296130 - 28296042
Alignment:
Q  330 tataagagaggtaacttgtatacctaatgccttaaagttttggatggagatgtggtgtcgctctctcttatgatcttggaacattagcc 418  Q
    |||||||||||| ||   ||||||||||  ||||| ||||||| ||||||||||||||| | ||||||| || || |||| ||||||||    
T  28296130 tataagagaggtgacccatatacctaatctcttaaggttttgggtggagatgtggtgtctccctctcttgtggtcctggagcattagcc 28296042  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 367 - 403
Target Start/End: Original strand, 1953206 - 1953242
Alignment:
Q  367 ttttggatggagatgtggtgtcgctctctcttatgat 403  Q
    ||||||||||||||||| |||| ||||||||||||||    
T  1953206 ttttggatggagatgtgatgtcactctctcttatgat 1953242  T

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Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 318 - 388
Target Start/End: Original strand, 45100227 - 45100297
Alignment:
Q  318 aaatgttggatatataagagaggtaacttgtatacctaatgccttaaagttttggatggagatgtggtgtc 388  Q
    |||||||| ||||||||||||| | |||  |||| |||||| ||||||||||| |||||||||||||||||    
T  45100227 aaatgttgaatatataagagagatgactcatataactaatgtcttaaagttttagatggagatgtggtgtc 45100297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 289 - 386
Target Start/End: Complemental strand, 33730196 - 33730099
Alignment:
Q  289 ttaagtcttacatcgtttataaataggttaaatgttggatatataagagaggtaacttgtatacctaatgccttaaagttttggatggagatgtggtg 386  Q
    |||||||  ||||||  ||| ||| |||||||||||||||||| ||||||||| ||   || | ||||||| |||| |||||||||||||||||||||    
T  33730196 ttaagtcccacatcgactatgaatgggttaaatgttggatataaaagagaggtgacccatagagctaatgcattaaggttttggatggagatgtggtg 33730099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 322 - 388
Target Start/End: Original strand, 27938807 - 27938873
Alignment:
Q  322 gttggatatataagagaggtaacttgtatacctaatgccttaaagttttggatggagatgtggtgtc 388  Q
    ||||||||||||||| |||  |||  ||||||||| ||||||| |||||||||| ||||||||||||    
T  27938807 gttggatatataagaaaggagactcatatacctaaagccttaaggttttggatgtagatgtggtgtc 27938873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 306 - 341
Target Start/End: Original strand, 2017099 - 2017134
Alignment:
Q  306 tataaataggttaaatgttggatatataagagaggt 341  Q
    |||||||| |||||||||||||||||||||||||||    
T  2017099 tataaataagttaaatgttggatatataagagaggt 2017134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 318 - 388
Target Start/End: Original strand, 24903736 - 24903806
Alignment:
Q  318 aaatgttggatatataagagaggtaacttgtatacctaatgccttaaagttttggatggagatgtggtgtc 388  Q
    ||||||||||||||||||| | |  ||  ||||| ||||| |||||||||||| |||| ||||||||||||    
T  24903736 aaatgttggatatataagatatgatacccgtataactaataccttaaagtttttgatgcagatgtggtgtc 24903806  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 323 - 388
Target Start/End: Complemental strand, 11307400 - 11307335
Alignment:
Q  323 ttggatatataagagaggtaacttgtatacctaatgccttaaagttttggatggagatgtggtgtc 388  Q
    ||||||||||||||||||  ||  |||||||| ||||||||| ||||||| |||||||||||||||    
T  11307400 ttggatatataagagaggggacacgtatacctgatgccttaatgttttgggtggagatgtggtgtc 11307335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 327 - 414
Target Start/End: Complemental strand, 33814808 - 33814721
Alignment:
Q  327 atatataagagaggtaacttgtatacctaatgccttaaagttttggatggagatgtggtgtcgctctctcttatgatcttggaacatt 414  Q
    ||||||||||||||| ||  ||||||||||| | |||| ||||||| ||||||| ||||||| | ||||||| ||  |||||||||||    
T  33814808 atatataagagaggtgacccgtatacctaatacattaaggttttgggtggagatatggtgtctccctctcttgtggccttggaacatt 33814721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 348 - 388
Target Start/End: Complemental strand, 26986741 - 26986701
Alignment:
Q  348 tatacctaatgccttaaagttttggatggagatgtggtgtc 388  Q
    ||||| ||||||||||| |||||||||||||||||||||||    
T  26986741 tatacataatgccttaaggttttggatggagatgtggtgtc 26986701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 318 - 388
Target Start/End: Complemental strand, 11307694 - 11307624
Alignment:
Q  318 aaatgttggatatataagagaggtaacttgtatacctaatgccttaaagttttggatggagatgtggtgtc 388  Q
    ||||||||||||||| |||||||  ||   ||||||| ||| ||||| ||||||| |||||||||||||||    
T  11307694 aaatgttggatatatgagagaggggacacatatacctcatgtcttaatgttttgggtggagatgtggtgtc 11307624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 326 - 376
Target Start/End: Complemental strand, 20090619 - 20090569
Alignment:
Q  326 gatatataagagaggtaacttgtatacctaatgccttaaagttttggatgg 376  Q
    |||||||||||||||| |||| |||||||||||| |||  |||||||||||    
T  20090619 gatatataagagaggtgacttatatacctaatgcattagggttttggatgg 20090569  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 388
Target Start/End: Original strand, 11269360 - 11269389
Alignment:
Q  359 ccttaaagttttggatggagatgtggtgtc 388  Q
    ||||||||||||||||||||||||||||||    
T  11269360 ccttaaagttttggatggagatgtggtgtc 11269389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 348 - 388
Target Start/End: Original strand, 47680694 - 47680734
Alignment:
Q  348 tatacctaatgccttaaagttttggatggagatgtggtgtc 388  Q
    ||||||| ||||||||| ||||||| |||||||||||||||    
T  47680694 tatacctgatgccttaaggttttgggtggagatgtggtgtc 47680734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 322 - 388
Target Start/End: Complemental strand, 22612349 - 22612283
Alignment:
Q  322 gttggatatataagagaggtaacttgtatacctaatgccttaaagttttggatggagatgtggtgtc 388  Q
    ||||||||||||||||||| | || |||||| | ||||||||| ||||||| || ||||||||||||    
T  22612349 gttggatatataagagagggagctcgtatacttgatgccttaaggttttgggtgtagatgtggtgtc 22612283  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 319 - 393
Target Start/End: Original strand, 14221276 - 14221350
Alignment:
Q  319 aatgttggatatataagagaggtaacttgtatacctaatgccttaaagttttggatggagatgtggtgtcgctct 393  Q
    |||||||||| |||||||||||| |||  |  | ||||||  |||| ||||||||||||||||||||||| ||||    
T  14221276 aatgttggatttataagagaggtgactcattaatctaatgtattaaggttttggatggagatgtggtgtccctct 14221350  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 348 - 388
Target Start/End: Original strand, 6250162 - 6250202
Alignment:
Q  348 tatacctaatgccttaaagttttggatggagatgtggtgtc 388  Q
    ||||||||||| ||||||||||| | |||||||||||||||    
T  6250162 tatacctaatggcttaaagttttaggtggagatgtggtgtc 6250202  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 348 - 388
Target Start/End: Complemental strand, 18089985 - 18089945
Alignment:
Q  348 tatacctaatgccttaaagttttggatggagatgtggtgtc 388  Q
    ||||||||||||||||| ||||||| || ||||||||||||    
T  18089985 tatacctaatgccttaaggttttgggtgaagatgtggtgtc 18089945  T

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Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 318 - 383
Target Start/End: Original strand, 5073025 - 5073090
Alignment:
Q  318 aaatgttggatatataagagaggtaacttgtatacctaatgccttaaagttttggatggagatgtg 383  Q
    |||||||||||||||||||||||   ||  ||||| ||||||||||| ||||||| ||||||||||    
T  5073025 aaatgttggatatataagagaggcgtctcatatacgtaatgccttaaggttttgggtggagatgtg 5073090  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 372
Target Start/End: Original strand, 4840566 - 4840615
Alignment:
Q  323 ttggatatataagagaggtaacttgtatacctaatgccttaaagttttgg 372  Q
    ||||||||||||||||||  |||| ||||||| || ||||||||||||||    
T  4840566 ttggatatataagagaggggacttatatacctgataccttaaagttttgg 4840615  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 348 - 388
Target Start/End: Complemental strand, 19263351 - 19263311
Alignment:
Q  348 tatacctaatgccttaaagttttggatggagatgtggtgtc 388  Q
    ||||||||||| ||||| |||| ||||||||||||||||||    
T  19263351 tatacctaatgtcttaaggtttaggatggagatgtggtgtc 19263311  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 323 - 383
Target Start/End: Complemental strand, 43978685 - 43978625
Alignment:
Q  323 ttggatatataagagaggtaacttgtatacctaatgccttaaagttttggatggagatgtg 383  Q
    ||||||||||||||||||  |||  |||||||| |||||||| ||||||| ||||||||||    
T  43978685 ttggatatataagagaggagactcatatacctattgccttaaggttttgggtggagatgtg 43978625  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 321 - 388
Target Start/End: Complemental strand, 42059907 - 42059840
Alignment:
Q  321 tgttggatatataagagaggtaacttgtatacctaatgccttaaagttttggatggagatgtggtgtc 388  Q
    |||| |||||||||||||||  ||   ||||||||||| ||||| |||||||||||||||||| ||||    
T  42059907 tgtttgatatataagagaggggacacttatacctaatgtcttaaggttttggatggagatgtgttgtc 42059840  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 387
Target Start/End: Original strand, 23161955 - 23162016
Alignment:
Q  326 gatatataagagaggtaacttgtatacctaatgccttaaagttttggatggagatgtggtgt 387  Q
    |||||||||||||||| |||  ||||||  |||||||||  |||||| ||||||||||||||    
T  23161955 gatatataagagaggtgactcatatacccgatgccttaagattttgggtggagatgtggtgt 23162016  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 348 - 388
Target Start/End: Original strand, 50442 - 50482
Alignment:
Q  348 tatacctaatgccttaaagttttggatggagatgtggtgtc 388  Q
    ||||||||||| ||||| |||| ||||||||||||||||||    
T  50442 tatacctaatgtcttaaggtttgggatggagatgtggtgtc 50482  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 319 - 387
Target Start/End: Original strand, 51677343 - 51677411
Alignment:
Q  319 aatgttggatatataagagaggtaacttgtatacctaatgccttaaagttttggatggagatgtggtgt 387  Q
    ||||||||||||| || |||| | |||  ||||||||||| |||  |||||||| ||||||||||||||    
T  51677343 aatgttggatatagaaaagagatgactcatatacctaatgtcttggagttttgggtggagatgtggtgt 51677411  T

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Target: scaffold0548 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0548
Description:

Target: scaffold0548; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 318 - 388
Target Start/End: Complemental strand, 4183 - 4113
Alignment:
Q  318 aaatgttggatatataagagaggtaacttgtatacctaatgccttaaagttttggatggagatgtggtgtc 388  Q
    ||||||||||||||| |||||||  ||   ||||||| ||| ||||| ||||||| |||||||||||||||    
T  4183 aaatgttggatatatgagagaggggacacatatacctcatgtcttaatgttttgggtggagatgtggtgtc 4113  T

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