View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2687_low_55 (Length: 325)

Name: NF2687_low_55
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2687_low_55
NF2687_low_55
[»] chr3 (11 HSPs)
chr3 (1-325)||(6914212-6914536)
chr3 (98-317)||(6256452-6256661)
chr3 (244-320)||(6879882-6879958)
chr3 (244-320)||(6897454-6897530)
chr3 (244-320)||(6166264-6166340)
chr3 (243-320)||(6724627-6724704)
chr3 (267-320)||(6851638-6851691)
chr3 (244-316)||(6242688-6242760)
chr3 (3-57)||(8573015-8573069)
chr3 (96-152)||(6166123-6166179)
chr3 (4-52)||(6233832-6233880)
[»] scaffold0425 (1 HSPs)
scaffold0425 (244-320)||(14070-14146)


Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 6914212 - 6914536
Alignment:
Q  1 aatgaaaattacagaaattcattaaaagaaagaggtactggaccagatgagccttcattagtgctgaagcagggaacttggattttatgggaaacagtca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6914212 aatgaaaattacagaaattcattaaaagaaagaggtactggaccagatgagccttcattagtgctgaagcagggaacttggattttatgggaaacagtca 6914311  T
Q  101 caagaataacgaagatgggattatatagtgaattatattaaaaagaattacaaacgcatcaagcctcagcagtaaactcatatccaaatggggtgcctac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  6914312 caagaataacgaagatgggattatatagtgaattatattaaaaagaattacaaacgcatcaagcctcagcagtgaactcatatccaaatggggtgcctac 6914411  T
Q  201 aattaaaccaagcatgtgttttgtggatgtggaacaaacagacaacagcgacatccttctggttacgtgtaagagcagtggtcgtgccattcatctggtc 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6914412 aattaaaccaagcatgtgttttgtggatgtggaacaaacagacaacagtgacatccttctggttacgtgtaagagcagtggtcgtgccattcatctggtc 6914511  T
Q  301 acgaatgggaatggatggcaccaac 325  Q
    |||||||||||||||||||||||||    
T  6914512 acgaatgggaatggatggcaccaac 6914536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 98 - 317
Target Start/End: Original strand, 6256452 - 6256661
Alignment:
Q  98 tcacaagaataacgaagatgggattatatagtgaattatattaaaaagaattacaaacgcatcaagcctcagcagtaaactcatatccaaatggggtgcc 197  Q
    ||||||||||||| ||||   |||||||| |||||||||||||||||||||||||   |||  || |||| || || ||  |||||||||||| || |||    
T  6256452 tcacaagaataacaaagagaagattatatggtgaattatattaaaaagaattacatgtgcaataaacctccgc-gtcaa--catatccaaatgcggggcc 6256548  T
Q  198 tacaattaaaccaagcatgtgttttgtggatgtggaacaaacagacaacagcgacatccttctggttacgtgtaagagcagtggtcgtgccattcatctg 297  Q
    |||||||  |||| ||||| | |||||||| ||||||||       |||||||||||||||||||||  |  | ||||| |||||| ||||||| |||||    
T  6256549 tacaattggaccatgcatgagctttgtggaagtggaaca-------aacagcgacatccttctggttgtgcatgagagcggtggtcatgccattgatctg 6256641  T
Q  298 gtcacgaatgggaatggatg 317  Q
    |||| |||||  ||||||||    
T  6256642 gtcatgaatgataatggatg 6256661  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 244 - 320
Target Start/End: Original strand, 6879882 - 6879958
Alignment:
Q  244 aacagcgacatccttctggttacgtgtaagagcagtggtcgtgccattcatctggtcacgaatgggaatggatggca 320  Q
    |||||| |||| ||||| |||  ||||||||||||||||| |||||||||| |||||||||||| ||||||||||||    
T  6879882 aacagctacatacttctagttgtgtgtaagagcagtggtcatgccattcatttggtcacgaatgagaatggatggca 6879958  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 244 - 320
Target Start/End: Original strand, 6897454 - 6897530
Alignment:
Q  244 aacagcgacatccttctggttacgtgtaagagcagtggtcgtgccattcatctggtcacgaatgggaatggatggca 320  Q
    |||||| |||| |||||||||  |||| |||||||||||| |||||||||| ||||||||| || ||||||||||||    
T  6897454 aacagctacatacttctggttgtgtgtgagagcagtggtcatgccattcatttggtcacgagtgagaatggatggca 6897530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 244 - 320
Target Start/End: Original strand, 6166264 - 6166340
Alignment:
Q  244 aacagcgacatccttctggttacgtgtaagagcagtggtcgtgccattcatctggtcacgaatgggaatggatggca 320  Q
    |||||| ||||  ||||||||  |||| ||||| |||||| |||||||||| |||||||||||| ||||||||||||    
T  6166264 aacagctacatatttctggttgtgtgtgagagcggtggtcatgccattcatttggtcacgaatgagaatggatggca 6166340  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 243 - 320
Target Start/End: Complemental strand, 6724704 - 6724627
Alignment:
Q  243 caacagcgacatccttctggttacgtgtaagagcagtggtcgtgccattcatctggtcacgaatgggaatggatggca 320  Q
    |||||| | ||| |||||||||  | || |||| |||||| |||||||||||||||||||||||| || |||||||||    
T  6724704 caacagaggcattcttctggttgtgcgtgagaggagtggttgtgccattcatctggtcacgaatgagattggatggca 6724627  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 267 - 320
Target Start/End: Complemental strand, 6851691 - 6851638
Alignment:
Q  267 gtgtaagagcagtggtcgtgccattcatctggtcacgaatgggaatggatggca 320  Q
    |||| |||| |||||| ||||||||||||||||||| |||| ||||||||||||    
T  6851691 gtgtgagaggagtggtggtgccattcatctggtcacaaatgagaatggatggca 6851638  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 316
Target Start/End: Original strand, 6242688 - 6242760
Alignment:
Q  244 aacagcgacatccttctggttacgtgtaagagcagtggtcgtgccattcatctggtcacgaatgggaatggat 316  Q
    |||||| |||| ||| |||||  |||| |||||||||||| |||||||| | |||||||||||| ||||||||    
T  6242688 aacagcaacatacttttggttgtgtgtgagagcagtggtcatgccattcgtttggtcacgaatgagaatggat 6242760  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 8573069 - 8573015
Alignment:
Q  3 tgaaaattacagaaattcattaaaagaaagaggtactggaccagatgagccttca 57  Q
    |||||||||||| ||||||| |||||||||||||| |||| || |||||| ||||    
T  8573069 tgaaaattacaggaattcatgaaaagaaagaggtattggagcaaatgagctttca 8573015  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 152
Target Start/End: Original strand, 6166123 - 6166179
Alignment:
Q  96 agtcacaagaataacgaagatgggattatatagtgaattatattaaaaagaattaca 152  Q
    ||||||||||||||| ||||   |||||||| |||||| | ||||||||||||||||    
T  6166123 agtcacaagaataacaaagagaagattatatggtgaatgaaattaaaaagaattaca 6166179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 6233832 - 6233880
Alignment:
Q  4 gaaaattacagaaattcattaaaagaaagaggtactggaccagatgagc 52  Q
    ||||||||||| ||||||| |||||||||| ||| ||||||| ||||||    
T  6233832 gaaaattacaggaattcatgaaaagaaagatgtattggaccaaatgagc 6233880  T

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Target: scaffold0425 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 320
Target Start/End: Complemental strand, 14146 - 14070
Alignment:
Q  244 aacagcgacatccttctggttacgtgtaagagcagtggtcgtgccattcatctggtcacgaatgggaatggatggca 320  Q
    ||||||| ||| ||||||||   |||| |||| |||||| ||||||||||| ||||||| |||| ||||||||||||    
T  14146 aacagcggcattcttctggtcgtgtgtgagaggagtggttgtgccattcatttggtcacaaatgagaatggatggca 14070  T

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