View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2687_low_56 (Length: 318)
Name: NF2687_low_56
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2687_low_56 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 21805169 - 21804862
Alignment:
| Q |
1 |
ttagtgtacttga----ttagtatatcattggccactcaccataattcaagaaatattcactaatttcgttgtgaagggataatagataccccaattaac |
96 |
Q |
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| T |
21805169 |
ttagtgtacttgattatttaatatatcattggccactcaccataattcaagaaatattaaataatttcgttgtgaagtgataatagataccccaattaac |
21805070 |
T |
|
| Q |
97 |
ctacaacaataaaactatatgaacttattatagctagatttcatttttaaatgagggnnnnnnnncctaggcctttaaagacacacattttaaaactcca |
196 |
Q |
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| T |
21805069 |
ctacaacaataaaactatatgaacttattatagctagttttcatttttaaatgagggaaaaaaaaactaggcctttaaagacacacattttaaaactcca |
21804970 |
T |
|
| Q |
197 |
aataaataatatagataattattgtgcttttaatattaatatgaatattttcttaagaagttgatatggccacattcattgtgaagtgttaat--agata |
294 |
Q |
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| T |
21804969 |
aataaataatatagataattattgtgcttttaatattaatatgaatattttcttaagaagttgatatggccacattcattgtgaagtgttaatagagata |
21804870 |
T |
|
| Q |
295 |
cccaagtt |
302 |
Q |
| |
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|||||||| |
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| T |
21804869 |
cccaagtt |
21804862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 183 - 272
Target Start/End: Complemental strand, 21804772 - 21804683
Alignment:
| Q |
183 |
attttaaaactccaaataaataatatagataattattgtgcttttaatattaatatgaatattttcttaagaagttgatatggccacatt |
272 |
Q |
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||||||||| |||||||||| ||| | |||||||||||| |||||||||||||||| | |||||||| ||||||| |||||| |||||| |
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| T |
21804772 |
attttaaaattccaaataaaatataaaaataattattgtgtttttaatattaatatgtacattttctttagaagtttatatggtcacatt |
21804683 |
T |
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