View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2687_low_59 (Length: 311)
Name: NF2687_low_59
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2687_low_59 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 47292528 - 47292305
Alignment:
| Q |
1 |
acataagcaacaataagttttcctgatattcagaaattcatgatttcccttcgaatttcatgagtttagcccaaccgcaatttaaacgataaatatgaag |
100 |
Q |
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| T |
47292528 |
acataagcaacaataagttttcctgattttctgaaattcatgatttcctttcgaatttcatgagtttagcccaaccacaatttaaacgataaatatgaag |
47292429 |
T |
|
| Q |
101 |
acacactgcagaaatacgatgatcatatgcggctttcaacaaattatcgcaaattcgaggcagagatgatacctcaccatggtgctcaggtatctggccg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
47292428 |
acacactgcagaaatacgatgatcatatgcggctttcaacaaattatcgcaaattcgaggcagagatgatacctcaccatggtgctcagatatctggccg |
47292329 |
T |
|
| Q |
201 |
ctcaaatcaatttgcaagacgctg |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
47292328 |
ctcaaatcaatttgcaagacgctg |
47292305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 232 - 303
Target Start/End: Complemental strand, 47291991 - 47291920
Alignment:
| Q |
232 |
gtgcagtatcagtcgattagggcttggaaaggaaaagaatagtgtatgagcgttagcttagggtttcttctc |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47291991 |
gtgcagtatcagtcgattagggcttggaaaggaaaagaatagtgtatgagcgttagcttagggtttcttctc |
47291920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 56209671 - 56209838
Alignment:
| Q |
1 |
acataagcaacaataagttttcctgatattcagaaattcatgatttcccttcgaatttcat-gagtttagcccaaccgcaatttaaacgataaatatgaa |
99 |
Q |
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| T |
56209671 |
acataagccacaacaagtttaccagattttctgaaatttaagatttgccttcgaatttcatcgagtttagcccaaccacaatttaaagtatcaatacgaa |
56209770 |
T |
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| Q |
100 |
gacacactgcagaaatacgatgatcatatgcggctttcaacaaattatcgcaaattcgaggcagagat |
167 |
Q |
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| T |
56209771 |
gatatacggcagaaatacgatgatcataagctgctttcaacatattatcgcaaaattgaggcagagat |
56209838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 22 - 164
Target Start/End: Original strand, 45863436 - 45863579
Alignment:
| Q |
22 |
cctgatattcagaaattcatgatttcccttcgaatttcatgag-tttagcccaaccgcaatttaaacgataaatatgaagacacactgcagaaatacgat |
120 |
Q |
| |
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|||||| ||| |||||||| ||||| ||||||||||||| || |||||||||||| ||||||||| || ||| |||||| | || |||||||||||| |
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| T |
45863436 |
cctgattttctgaaattcaagatttgtcttcgaatttcatcagctttagcccaaccacaatttaaattatcaatttgaagatatacggcagaaatacgag |
45863535 |
T |
|
| Q |
121 |
gatcatatgcggctttcaacaaattatcgcaaattcgaggcaga |
164 |
Q |
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||||||| || ||||||||||||||||| |||||| | |||||| |
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| T |
45863536 |
gatcataagctgctttcaacaaattatctcaaatttggggcaga |
45863579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 49 - 155
Target Start/End: Original strand, 45883411 - 45883518
Alignment:
| Q |
49 |
cttcgaatttcat-gagtttagcccaaccgcaatttaaacgataaatatgaagacacactgcagaaatacgatgatcatatgcggctttcaacaaattat |
147 |
Q |
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||||||||||||| ||||||||||||||||||||||||| | ||| |||||| |||| ||||||||||| ||||||| || |||||||||||||||| |
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| T |
45883411 |
cttcgaatttcatcgagtttagcccaaccgcaatttaaattgtcaatttgaagatacacaccagaaatacgaggatcataagctgctttcaacaaattat |
45883510 |
T |
|
| Q |
148 |
cgcaaatt |
155 |
Q |
| |
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|||||||| |
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|
| T |
45883511 |
cgcaaatt |
45883518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 240 - 299
Target Start/End: Complemental strand, 47288472 - 47288412
Alignment:
| Q |
240 |
tcagtcgattagggctt-ggaaaggaaaagaatagtgtatgagcgttagcttagggtttct |
299 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||| |||| |
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| T |
47288472 |
tcagtcgattagggctttggaaaggaaaagaatagtgcatgagcgtgagcttagggcttct |
47288412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 54303443 - 54303383
Alignment:
| Q |
1 |
acataagcaacaataagttttcctgatattcagaaattcatgatttcccttcgaatttcat |
61 |
Q |
| |
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|||||||||| ||||||||||||||| ||| |||||| | ||||| |||||||||||||| |
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| T |
54303443 |
acataagcaaagataagttttcctgattttctgaaatttaagatttgccttcgaatttcat |
54303383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 7973580 - 7973742
Alignment:
| Q |
1 |
acataagcaacaataagttttcctgatattcagaaattcatgatttcccttcgaatttcat-gagtttagcccaaccgcaatttaaacgataaatatgaa |
99 |
Q |
| |
|
|||||||||||||||||||| |||||| ||| |||||| |||||||||||| ||||||||| ||||||||| |||| ||| |||||| |||||||| || |
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| T |
7973580 |
acataagcaacaataagtttacctgattttctgaaatttatgatttccctttgaatttcatcgagtttagctcaactgcattttaaaggataaataacaa |
7973679 |
T |
|
| Q |
100 |
gacacactgcagaaatacgatgatcatatgcggctttcaacaaattatcgcaaattcgaggca |
162 |
Q |
| |
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| |||| |||||||||||| ||||||| ||||||||||||||||| ||||||||| |||||| |
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| T |
7973680 |
catacacagcagaaatacgaggatcataagcggctttcaacaaattctcgcaaatttgaggca |
7973742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 63 - 167
Target Start/End: Complemental strand, 10520321 - 10520217
Alignment:
| Q |
63 |
agtttagcccaaccgcaatttaaacgataaatatgaagacacactgcagaaatacgatgatcatatgcggctttcaacaaattatcgcaaattcgaggca |
162 |
Q |
| |
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|||||||||||||| ||| ||||| | | ||||||||| | || || ||||||| | |||||||||| |||||||| |||||| |||||||| |||| | |
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| T |
10520321 |
agtttagcccaaccccaacttaaatggtcgatatgaagataaacagcggaaatacaaggatcatatgctgctttcaagaaattaccgcaaatttgaggaa |
10520222 |
T |
|
| Q |
163 |
gagat |
167 |
Q |
| |
|
||||| |
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| T |
10520221 |
gagat |
10520217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 174
Target Start/End: Original strand, 35803584 - 35803647
Alignment:
| Q |
111 |
gaaatacgatgatcatatgcggctttcaacaaattatcgcaaattcgaggcagagatgatacct |
174 |
Q |
| |
|
||||||||| ||||||| ||||||||||| |||| |||||||||| |||||||||| |||||| |
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| T |
35803584 |
gaaatacgaggatcataagcggctttcaagaaataatcgcaaatttcaggcagagataatacct |
35803647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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