View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2687_low_60 (Length: 310)
Name: NF2687_low_60
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2687_low_60 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 32761811 - 32762114
Alignment:
| Q |
1 |
tgaaactgtaaattaaagagcacaattatgtcttttaatcttactcttactagtgcgactatgtggaccgaagaaaatatttgttcttcccacaaacacc |
100 |
Q |
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| T |
32761811 |
tgaaactgtaaattaaagagcacaattatgtcttttaatctt------actagtgcgactatgtggaccgaagaaaatatttgttcttcccacaaacacc |
32761904 |
T |
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| Q |
101 |
aataaacaaatagggatttcaccaatgacttcatacaaatagaagatattttgatagtaagttatcaaactagtatattattagagtgctcaacaaacac |
200 |
Q |
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| T |
32761905 |
aataaacaaatagggatttcaccaatgacttcataaaaatagaagatatttcgatagtaagtgatcaaactagtatattattagagtgctcaacaaacac |
32762004 |
T |
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| Q |
201 |
aaatttcataaatatcttattttttacaaaagtatcctgaaaaataaaccaccataccaatcaaacaggtttaaatcaaaatgatcaccattttctattt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
32762005 |
aaatttcataaatatcttattttttacaaaagtatcctgaaaaataaaccactataccaatcaaacaggtttaaatcaaaatgatcaacattttctattt |
32762104 |
T |
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| Q |
301 |
taactttttt |
310 |
Q |
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||| |||||| |
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| T |
32762105 |
taattttttt |
32762114 |
T |
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