View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2687_low_64 (Length: 298)

Name: NF2687_low_64
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2687_low_64
NF2687_low_64
[»] chr3 (17 HSPs)
chr3 (1-278)||(6914562-6914840)
chr3 (115-278)||(6242898-6243056)
chr3 (108-278)||(6235616-6235786)
chr3 (108-278)||(6166465-6166636)
chr3 (132-278)||(6263275-6263421)
chr3 (108-278)||(6139855-6140025)
chr3 (109-278)||(6256772-6256941)
chr3 (115-258)||(6897664-6897807)
chr3 (132-278)||(13275694-13275840)
chr3 (93-258)||(6880070-6880235)
chr3 (147-258)||(6851368-6851479)
chr3 (69-259)||(6593662-6593852)
chr3 (211-279)||(4391202-4391270)
chr3 (210-243)||(6782657-6782690)
chr3 (210-243)||(6941607-6941640)
chr3 (210-258)||(5278336-5278384)
chr3 (211-243)||(6944721-6944753)
[»] scaffold0425 (1 HSPs)
scaffold0425 (147-258)||(13802-13912)


Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 6914562 - 6914840
Alignment:
Q  1 ctgtcagaaacagtattgcaaaatatatcagtatatcacaaatacatgcactgttaagcctaaaaggctaaaacatagtatcttgtgc-ttactttacta 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  6914562 ctgtcagaaacagtattgcaaaatatatcagtatatcacaaatacatgcactgttaagcctaaaaggctaaaacatagtatcttgtgcattactttacta 6914661  T
Q  100 tttgagcaaaaattcactattgtttgactaaaataaacagattattgaatgtggtgcacctggatacaataacatctgatctcagcctcaaatcaagaaa 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6914662 tttgagcaaaaattcactattgtttgactaaaataaacagattattgaatgtggtgcacctggatacaataacatctgatctcagcctcaaatcaagaaa 6914761  T
Q  200 ttgtcacggaagggatgtgacaaattctatgccaacgctctccttgctccatttggtacaatttcttaagtaatggaca 278  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6914762 ttgtcacggaagggatgtgacaaattctatgccaacgctctccttgctccatttggtacaatttcttaagtaatggaca 6914840  T

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Target: chr3; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 115 - 278
Target Start/End: Original strand, 6242898 - 6243056
Alignment:
Q  115 actattgtttgactaaaataaacagattattgaatgtggtgcacctggatacaataacatctgatctcagcctcaaatcaagaaattgtcacggaaggga 214  Q
    |||| |||||||| |  |||||||||||  |||||||| ||||||||| |||||||||||||     ||||| | ||||| ||||||||||||  |||||    
T  6242898 actaatgtttgacaactataaacagattggtgaatgtgctgcacctggctacaataacatct-----cagccgccaatcaggaaattgtcacgttaggga 6242992  T
Q  215 tgtgacaaattctatgccaacgctctccttgctccatttggtacaatttcttaagtaatggaca 278  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||| | |||||||||||||||    
T  6242993 tgtgacaaattgtatgccaacgctctccttgctccttttggtacaactgcttaagtaatggaca 6243056  T

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Target: chr3; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 108 - 278
Target Start/End: Original strand, 6235616 - 6235786
Alignment:
Q  108 aaaattcactattgtttgactaaaataaacagattattgaatgtggtgcacctggatacaataacatctgatctcagcctcaaatcaagaaattgtcacg 207  Q
    |||||| |||| |||||||| |  |||||||||||    |||||||||||||||| ||||||||||||| ||||||||  | ||||| |||||||||||     
T  6235616 aaaatttactaatgtttgacaagtataaacagattgggaaatgtggtgcacctggctacaataacatctcatctcagctgccaatcaggaaattgtcaca 6235715  T
Q  208 gaagggatgtgacaaattctatgccaacgctctccttgctccatttggtacaatttcttaagtaatggaca 278  Q
     |||| |||||| ||||| ||||||||||||||||||||||| |||||||||| | ||||| |||||||||    
T  6235716 taaggaatgtgagaaattgtatgccaacgctctccttgctccttttggtacaactgcttaattaatggaca 6235786  T

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Target: chr3; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 108 - 278
Target Start/End: Original strand, 6166465 - 6166636
Alignment:
Q  108 aaaattcactattgtttgactaaaat-aaacagattattgaatgtggtgcacctggatacaataacatctgatctcagcctcaaatcaagaaattgtcac 206  Q
    |||||| |||| |||||||| | ||| |||||||||  |||||||||||||||||| ||||||||||||| || |||||  | ||||| |||||||||||    
T  6166465 aaaatttactaatgtttgacaacaattaaacagattggtgaatgtggtgcacctggctacaataacatctcatatcagctgccaatcaggaaattgtcac 6166564  T
Q  207 ggaagggatgtgacaaattctatgccaacgctctccttgctccatttggtacaatttcttaagtaatggaca 278  Q
       ||| ||||||| |||| |||||| ||| |||||||||||| |||||||||| |||||||||||||||||    
T  6166565 atcaggaatgtgactaattgtatgcctacgttctccttgctccttttggtacaacttcttaagtaatggaca 6166636  T

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Target: chr3; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 132 - 278
Target Start/End: Original strand, 6263275 - 6263421
Alignment:
Q  132 ataaacagattattgaatgtggtgcacctggatacaataacatctgatctcagcctcaaatcaagaaattgtcacggaagggatgtgacaaattctatgc 231  Q
    |||||||||||  ||||||| |||||||||| ||||||||||||| ||||||||  | ||||| |||||||||||  |||| |||||| ||||| |||||    
T  6263275 ataaacagattggtgaatgttgtgcacctggctacaataacatctcatctcagctgccaatcaggaaattgtcacataaggaatgtgagaaattgtatgc 6263374  T
Q  232 caacgctctccttgctccatttggtacaatttcttaagtaatggaca 278  Q
    |||||||| ||||||||| |||||||||| | ||||| |||||||||    
T  6263375 caacgctcgccttgctccgtttggtacaactgcttaattaatggaca 6263421  T

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Target: chr3; HSP #6
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 108 - 278
Target Start/End: Original strand, 6139855 - 6140025
Alignment:
Q  108 aaaattcactattgtttgactaaaataaacagattattgaatgtggtgcacctggatacaataacatctgatctcagcctcaaatcaagaaattgtcacg 207  Q
    |||||| |||| |||||||| |  |||||||||||  ||||||| ||||||||||| | |||||||||| |||||||||   ||||| |||||||| ||     
T  6139855 aaaatttactaatgtttgacaactataaacagattggtgaatgttgtgcacctggaaaaaataacatctcatctcagccgtcaatcaggaaattgtgaca 6139954  T
Q  208 gaagggatgtgacaaattctatgccaacgctctccttgctccatttggtacaatttcttaagtaatggaca 278  Q
    |||||||| ||| ||||| ||||||||||||| ||||||||| |||||||||| | ||| | |||||||||    
T  6139955 gaagggatatgagaaattgtatgccaacgctcgccttgctccttttggtacaactgcttgattaatggaca 6140025  T

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Target: chr3; HSP #7
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 109 - 278
Target Start/End: Original strand, 6256772 - 6256941
Alignment:
Q  109 aaattcactattgtttgactaaaataaacagattattgaatgtggtgcacctggatacaataacatctgatctcagcctcaaatcaagaaattgtcacgg 208  Q
    ||||| |||| |||||||| |  |||||||||||  ||||||| |||||||||  |||||||| |||||||||||||  | ||||| |||||| ||||      
T  6256772 aaatttactaatgtttgacaactataaacagattggtgaatgttgtgcacctgtctacaataaaatctgatctcagctgccaatcaggaaattatcacat 6256871  T
Q  209 aagggatgtgacaaattctatgccaacgctctccttgctccatttggtacaatttcttaagtaatggaca 278  Q
    ||||||||||| ||||| |||||||| |||| ||||||||| |||||||||  | ||||| |||||||||    
T  6256872 aagggatgtgagaaattgtatgccaatgctcgccttgctccttttggtacagctgcttaattaatggaca 6256941  T

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Target: chr3; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 115 - 258
Target Start/End: Original strand, 6897664 - 6897807
Alignment:
Q  115 actattgtttgactaaaataaacagattattgaatgtggtgcacctggatacaataacatctgatctcagcctcaaatcaagaaattgtcacggaaggga 214  Q
    |||| |||||||| |  |||||||||||  |||||||||||||||||| || |||||||||| ||||||||| | ||||| |||||||||||   ||| |    
T  6897664 actaatgtttgacaagtataaacagattggtgaatgtggtgcacctggctataataacatctcatctcagccgccaatcaggaaattgtcacatcaggaa 6897763  T
Q  215 tgtgacaaattctatgccaacgctctccttgctccatttggtac 258  Q
    |||||| |||| ||||||||| |||||||| |||| ||||||||    
T  6897764 tgtgactaattgtatgccaacactctccttcctccttttggtac 6897807  T

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Target: chr3; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 132 - 278
Target Start/End: Complemental strand, 13275840 - 13275694
Alignment:
Q  132 ataaacagattattgaatgtggtgcacctggatacaataacatctgatctcagcctcaaatcaagaaattgtcacggaagggatgtgacaaattctatgc 231  Q
    |||||||||||  ||||| | ||||||||||| | |||||||||| |||||||||   ||||| |||||||| || |||||||| ||| ||||| |||||    
T  13275840 ataaacagattggtgaatatcgtgcacctggaaaaaataacatctcatctcagccgtcaatcaggaaattgtgacagaagggatatgagaaattgtatgc 13275741  T
Q  232 caacgctctccttgctccatttggtacaatttcttaagtaatggaca 278  Q
    |||||||  ||||||||| |||||||||| | ||||| |||||||||    
T  13275740 caacgcttgccttgctccttttggtacaactgcttaattaatggaca 13275694  T

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Target: chr3; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 93 - 258
Target Start/End: Original strand, 6880070 - 6880235
Alignment:
Q  93 tttactatttgagcaaaaattcactattgtttgactaaaataaacagattattgaatgtggtgcacctggatacaataacatctgatctcagcctcaaat 192  Q
    |||||||||| ||  |||||  |||| |||||||| |  |||||||||||    |||||||||||||||| ||||||||||||| ||||||||| |  ||    
T  6880070 tttactatttaagagaaaatatactaatgtttgacaagtataaacagattgggaaatgtggtgcacctggctacaataacatctcatctcagccgcctat 6880169  T
Q  193 caagaaattgtcacggaagggatgtgacaaattctatgccaacgctctccttgctccatttggtac 258  Q
    || |||||||||||   ||| ||||||| |||| |||||||||||||||||| |||| ||||||||    
T  6880170 caggaaattgtcacatcaggaatgtgactaattgtatgccaacgctctccttcctccttttggtac 6880235  T

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Target: chr3; HSP #11
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 147 - 258
Target Start/End: Complemental strand, 6851479 - 6851368
Alignment:
Q  147 aatgtggtgcacctggatacaataacatctgatctcagcctcaaatcaagaaattgtcacggaagggatgtgacaaattctatgccaacgctctccttgc 246  Q
    |||||||||||||||| ||||||||||||| ||||||||| | ||||| |||||||||||   ||| ||||||| |||| |||||||| ||||| ||| |    
T  6851479 aatgtggtgcacctggctacaataacatctcatctcagccgccaatcaggaaattgtcacatcaggaatgtgactaattgtatgccaatgctctgcttcc 6851380  T
Q  247 tccatttggtac 258  Q
    ||| ||||||||    
T  6851379 tccctttggtac 6851368  T

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Target: chr3; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 69 - 259
Target Start/End: Complemental strand, 6593852 - 6593662
Alignment:
Q  69 taaaacatagtatcttgtgc-ttactttactatttgagcaaaaattcactattgtttgactaaaataaacagattattgaatgtggtgcacctggataca 167  Q
    |||||||||||||||||||| ||| | ||  |||||| || |||||||| | | |||||| |  ||||||| |||  |||||| ||||||||||| ||||    
T  6593852 taaaacatagtatcttgtgcattattgtatgatttga-cagaaattcacaaatctttgacaagtataaacaaattggtgaatgcggtgcacctggctaca 6593754  T
Q  168 ataacatctgatctcagcctcaaatcaagaaattgtcacggaagggatgtgacaaattctatgccaacgctctccttgctccatttggtaca 259  Q
    |||||| || ||| || || | ||||| |||||||| ||   ||| ||||||| |||| |||||||| |||| |||| ||||||||||||||    
T  6593753 ataacagctcatcccaaccgctaatcaggaaattgttacatcaggaatgtgactaattttatgccaatgctcgccttcctccatttggtaca 6593662  T

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Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 279
Target Start/End: Complemental strand, 4391270 - 4391202
Alignment:
Q  211 gggatgtgacaaattctatgccaacgctctccttgctccatttggtacaatttcttaagtaatggacat 279  Q
    ||||||||||||||| ||||||| | |||||||| |||| ||||||||   | ||||||||||||||||    
T  4391270 gggatgtgacaaattgtatgccagcactctccttcctccttttggtactgctccttaagtaatggacat 4391202  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 243
Target Start/End: Complemental strand, 6782690 - 6782657
Alignment:
Q  210 agggatgtgacaaattctatgccaacgctctcct 243  Q
    |||||||||||||||| |||||||||||||||||    
T  6782690 agggatgtgacaaattgtatgccaacgctctcct 6782657  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 243
Target Start/End: Original strand, 6941607 - 6941640
Alignment:
Q  210 agggatgtgacaaattctatgccaacgctctcct 243  Q
    |||||||||||||||| |||||||||||||||||    
T  6941607 agggatgtgacaaattgtatgccaacgctctcct 6941640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 258
Target Start/End: Original strand, 5278336 - 5278384
Alignment:
Q  210 agggatgtgacaaattctatgccaacgctctccttgctccatttggtac 258  Q
    |||||||||||||||| ||| ||||| |||||||| |||| ||||||||    
T  5278336 agggatgtgacaaattgtattccaactctctccttcctccttttggtac 5278384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 243
Target Start/End: Original strand, 6944721 - 6944753
Alignment:
Q  211 gggatgtgacaaattctatgccaacgctctcct 243  Q
    ||||||||||||||| |||||||||||||||||    
T  6944721 gggatgtgacaaattgtatgccaacgctctcct 6944753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 147 - 258
Target Start/End: Complemental strand, 13912 - 13802
Alignment:
Q  147 aatgtggtgcacctggatacaataacatctgatctcagcctcaaatcaagaaattgtcacggaagggatgtgacaaattctatgccaacgctctccttgc 246  Q
    |||||||||||||||| ||||||||||||| ||||||||| | ||||| |||||||||||   | ||| ||||| |||| |||||||| ||||||||| |    
T  13912 aatgtggtgcacctggctacaataacatctcatctcagccgccaatcaggaaattgtcacatca-ggaagtgactaattgtatgccaatgctctccttcc 13814  T
Q  247 tccatttggtac 258  Q
    ||| ||||||||    
T  13813 tccctttggtac 13802  T

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