View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2687_low_66 (Length: 294)
Name: NF2687_low_66
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2687_low_66 |
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Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 20 - 284
Target Start/End: Original strand, 33793356 - 33793622
Alignment:
| Q |
20 |
ttatgctctatcgccgcaagaaattcattgaatcttattcaattaccaggaattggttcttaatcaattaggatcaatgttttagcttcctattttatct |
119 |
Q |
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| T |
33793356 |
ttatgctctatcgccgcaagaaattcattgaatcttattcaattaccaggaattggttcttaatcaattaggatcaatgttttagcttcctattttatct |
33793455 |
T |
|
| Q |
120 |
tgccgtcattaagaagtata--gtctctcttcctctacgagtaaactcacgtctctattattaagtctgcatatccttcataccattagattcacaagcc |
217 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
33793456 |
tgccgtcattaagaagtatacagtctctcttcctctacgagtaaactcacgtctctattattaagtctgcatattcttcataccattagattcacaagcc |
33793555 |
T |
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| Q |
218 |
accaccaattggtacaatccaaaagatataatttccaaggccacaagaatgatctatatcatctctg |
284 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33793556 |
accaccaattggtacaatccaaaagatataatttccaaggccacaagaatgatctatatcatctctg |
33793622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 160 - 286
Target Start/End: Complemental strand, 8311715 - 8311589
Alignment:
| Q |
160 |
aaactcacgtctctattattaagtctgcatatccttcataccattagattcacaagccaccaccaattggtacaatccaaaagatataatttccaaggcc |
259 |
Q |
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||||||||| |||||| ||||||||||||||| ||||||||||| ||||||||| ||| |||||||||| ||| ||||||| | ||| ||||| |||||| |
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| T |
8311715 |
aaactcacgcctctatcattaagtctgcatattcttcataccatcagattcacacgcctccaccaattgctaccatccaaagggtattatttctaaggcc |
8311616 |
T |
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| Q |
260 |
acaagaatgatctatatcatctctgct |
286 |
Q |
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|||||||| |||| ||||||||||||| |
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| T |
8311615 |
acaagaataatctttatcatctctgct |
8311589 |
T |
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