View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2687_low_69 (Length: 293)

Name: NF2687_low_69
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2687_low_69
NF2687_low_69
[»] scaffold0783 (1 HSPs)
scaffold0783 (98-289)||(5866-6054)
[»] scaffold0006 (2 HSPs)
scaffold0006 (98-221)||(81433-81555)
scaffold0006 (249-277)||(130107-130135)
[»] chr8 (30 HSPs)
chr8 (99-171)||(24243118-24243190)
chr8 (107-238)||(12022145-12022278)
chr8 (107-238)||(43732796-43732928)
chr8 (99-238)||(41103507-41103649)
chr8 (104-165)||(5656188-5656249)
chr8 (99-235)||(31543078-31543215)
chr8 (107-238)||(16024263-16024394)
chr8 (99-151)||(38198140-38198192)
chr8 (110-188)||(29937614-29937693)
chr8 (107-207)||(9933350-9933451)
chr8 (107-238)||(8815144-8815276)
chr8 (107-155)||(9434386-9434434)
chr8 (106-170)||(26167864-26167928)
chr8 (107-155)||(39449413-39449461)
chr8 (99-137)||(1026954-1026992)
chr8 (99-149)||(30581904-30581953)
chr8 (106-151)||(27487098-27487143)
chr8 (99-184)||(29358397-29358482)
chr8 (107-155)||(6453293-6453341)
chr8 (107-238)||(30365239-30365371)
chr8 (107-155)||(43826441-43826489)
chr8 (106-149)||(22591501-22591544)
chr8 (106-137)||(31738531-31738562)
chr8 (106-157)||(34552669-34552720)
chr8 (98-238)||(16653049-16653190)
chr8 (99-155)||(11575493-11575549)
chr8 (107-155)||(20472779-20472827)
chr8 (98-237)||(30479721-30479861)
chr8 (107-155)||(34196418-34196466)
chr8 (113-184)||(37923135-37923207)
[»] chr3 (23 HSPs)
chr3 (107-238)||(34641101-34641231)
chr3 (107-188)||(40858674-40858756)
chr3 (104-238)||(24560323-24560458)
chr3 (104-150)||(45663236-45663282)
chr3 (107-155)||(16884059-16884106)
chr3 (107-150)||(42772141-42772184)
chr3 (99-184)||(37807181-37807267)
chr3 (99-184)||(651832-651917)
chr3 (99-136)||(54996786-54996823)
chr3 (107-238)||(24253831-24253963)
chr3 (107-238)||(26135906-26136038)
chr3 (99-238)||(41110324-41110464)
chr3 (107-155)||(41414187-41414235)
chr3 (106-137)||(18654705-18654736)
chr3 (107-150)||(44412470-44412513)
chr3 (110-155)||(27197736-27197781)
chr3 (104-137)||(27542036-27542069)
chr3 (99-143)||(2387859-2387903)
chr3 (99-139)||(37237023-37237063)
chr3 (107-155)||(42699699-42699747)
chr3 (107-155)||(46978536-46978584)
chr3 (113-153)||(48685961-48686001)
chr3 (111-155)||(55428492-55428536)
[»] chr7 (33 HSPs)
chr7 (107-238)||(33519157-33519289)
chr7 (107-235)||(37620883-37621012)
chr7 (99-238)||(40196535-40196675)
chr7 (106-238)||(30592256-30592389)
chr7 (107-238)||(36267556-36267688)
chr7 (99-151)||(18127333-18127385)
chr7 (99-201)||(23116299-23116403)
chr7 (107-238)||(48881561-48881693)
chr7 (99-201)||(33655148-33655251)
chr7 (107-188)||(28074156-28074238)
chr7 (107-155)||(16833804-16833852)
chr7 (99-151)||(20393702-20393754)
chr7 (99-238)||(41496960-41497100)
chr7 (107-150)||(12670928-12670971)
chr7 (104-150)||(7791825-7791871)
chr7 (105-238)||(18231693-18231827)
chr7 (110-148)||(48094005-48094043)
chr7 (99-136)||(18063667-18063704)
chr7 (99-184)||(22163167-22163252)
chr7 (99-184)||(22221875-22221960)
chr7 (104-235)||(4833537-4833669)
chr7 (104-238)||(47390961-47391097)
chr7 (108-155)||(3215947-3215994)
chr7 (104-150)||(26365874-26365920)
chr7 (104-155)||(19261929-19261977)
chr7 (99-136)||(37562737-37562774)
chr7 (99-143)||(17852972-17853016)
chr7 (107-155)||(21857456-21857504)
chr7 (99-155)||(24970252-24970308)
chr7 (115-155)||(29814358-29814398)
chr7 (99-135)||(37417740-37417776)
chr7 (106-185)||(37929869-37929949)
chr7 (114-150)||(48015323-48015359)
[»] chr1 (27 HSPs)
chr1 (110-237)||(35512909-35513037)
chr1 (98-238)||(38509897-38510038)
chr1 (99-238)||(40094936-40095076)
chr1 (109-155)||(17622648-17622694)
chr1 (99-153)||(44210994-44211048)
chr1 (107-238)||(1085492-1085625)
chr1 (99-238)||(41498505-41498646)
chr1 (107-155)||(35927922-35927970)
chr1 (99-152)||(49832648-49832698)
chr1 (107-150)||(51303476-51303519)
chr1 (107-238)||(20607328-20607458)
chr1 (107-188)||(33643377-33643459)
chr1 (112-188)||(13386972-13387049)
chr1 (98-155)||(36285661-36285718)
chr1 (98-177)||(7444595-7444675)
chr1 (106-238)||(35349469-35349598)
chr1 (103-137)||(20576236-20576270)
chr1 (99-184)||(32951375-32951461)
chr1 (107-188)||(47071160-47071242)
chr1 (99-137)||(50744386-50744424)
chr1 (104-137)||(49946693-49946726)
chr1 (107-155)||(2506648-2506696)
chr1 (99-155)||(8529900-8529956)
chr1 (249-277)||(13601450-13601478)
chr1 (107-238)||(30010441-30010573)
chr1 (104-136)||(51582087-51582119)
chr1 (108-136)||(52711797-52711825)
[»] chr4 (44 HSPs)
chr4 (107-238)||(37761573-37761705)
chr4 (99-226)||(21694905-21695032)
chr4 (107-238)||(54576330-54576462)
chr4 (107-188)||(4437478-4437560)
chr4 (99-184)||(6891461-6891547)
chr4 (99-184)||(55510271-55510356)
chr4 (99-155)||(11842408-11842464)
chr4 (99-155)||(17938194-17938250)
chr4 (107-188)||(22186828-22186910)
chr4 (107-188)||(43961519-43961601)
chr4 (102-189)||(16400904-16400992)
chr4 (99-238)||(27735846-27735986)
chr4 (99-143)||(37711244-37711288)
chr4 (99-155)||(47433796-47433851)
chr4 (107-150)||(7977588-7977631)
chr4 (104-238)||(45741996-45742131)
chr4 (107-188)||(29993824-29993906)
chr4 (105-155)||(46007788-46007838)
chr4 (107-188)||(47846108-47846190)
chr4 (99-184)||(36151677-36151762)
chr4 (99-184)||(45132559-45132644)
chr4 (99-238)||(54935169-54935310)
chr4 (107-151)||(17182576-17182620)
chr4 (99-139)||(41227581-41227621)
chr4 (98-153)||(5307107-5307162)
chr4 (106-137)||(5730935-5730966)
chr4 (104-238)||(41174451-41174586)
chr4 (116-155)||(51075215-51075254)
chr4 (99-137)||(26167038-26167076)
chr4 (99-137)||(35248787-35248825)
chr4 (107-137)||(54001208-54001238)
chr4 (107-137)||(56135858-56135888)
chr4 (104-137)||(1968464-1968497)
chr4 (104-137)||(2917068-2917101)
chr4 (100-165)||(8347302-8347367)
chr4 (107-136)||(47694458-47694487)
chr4 (98-238)||(49735471-49735612)
chr4 (115-155)||(5825013-5825053)
chr4 (107-155)||(11089625-11089673)
chr4 (99-139)||(22921083-22921123)
chr4 (99-139)||(22970676-22970716)
chr4 (99-155)||(34108314-34108369)
chr4 (99-238)||(54320535-54320675)
chr4 (107-155)||(55080688-55080736)
[»] chr2 (28 HSPs)
chr2 (99-238)||(31795772-31795912)
chr2 (98-238)||(23748195-23748336)
chr2 (107-155)||(35325378-35325426)
chr2 (98-238)||(9631660-9631801)
chr2 (107-150)||(31928136-31928179)
chr2 (104-238)||(36046207-36046342)
chr2 (102-238)||(35736295-35736428)
chr2 (104-149)||(20545815-20545860)
chr2 (107-151)||(45098278-45098322)
chr2 (107-239)||(15085701-15085835)
chr2 (99-137)||(15224799-15224837)
chr2 (99-137)||(39732834-39732872)
chr2 (104-137)||(36566956-36566989)
chr2 (105-137)||(8426976-8427008)
chr2 (107-238)||(45257416-45257548)
chr2 (107-150)||(3094445-3094488)
chr2 (99-201)||(12751916-12752019)
chr2 (107-150)||(31061468-31061511)
chr2 (107-150)||(33265715-33265758)
chr2 (99-137)||(37739996-37740034)
chr2 (99-137)||(42316869-42316907)
chr2 (104-133)||(887022-887051)
chr2 (99-148)||(15915832-15915881)
chr2 (99-152)||(41778874-41778927)
chr2 (110-238)||(42813732-42813861)
chr2 (104-136)||(887222-887254)
chr2 (107-155)||(1052842-1052890)
chr2 (104-152)||(39354264-39354312)
[»] scaffold0012 (1 HSPs)
scaffold0012 (107-237)||(184716-184847)
[»] chr5 (34 HSPs)
chr5 (106-207)||(13839762-13839864)
chr5 (107-238)||(33744196-33744328)
chr5 (107-238)||(34980919-34981051)
chr5 (104-155)||(42681559-42681610)
chr5 (99-238)||(28279479-28279619)
chr5 (104-238)||(13634817-13634952)
chr5 (98-238)||(7544236-7544377)
chr5 (99-155)||(10072734-10072790)
chr5 (147-238)||(1657963-1658054)
chr5 (115-149)||(2556110-2556144)
chr5 (112-150)||(6597882-6597920)
chr5 (99-152)||(18855708-18855761)
chr5 (99-238)||(26414994-26415135)
chr5 (104-149)||(33424895-33424940)
chr5 (127-238)||(2183943-2184055)
chr5 (110-150)||(10043101-10043141)
chr5 (107-155)||(10204685-10204733)
chr5 (104-238)||(37551513-37551646)
chr5 (104-238)||(37654343-37654476)
chr5 (104-238)||(37607000-37607135)
chr5 (104-238)||(37779209-37779344)
chr5 (99-137)||(4373671-4373709)
chr5 (99-137)||(16938580-16938618)
chr5 (99-137)||(36392255-36392293)
chr5 (110-155)||(8551505-8551550)
chr5 (98-155)||(9856980-9857037)
chr5 (104-188)||(11437045-11437130)
chr5 (104-136)||(1977638-1977670)
chr5 (107-155)||(10043361-10043409)
chr5 (107-155)||(21581056-21581104)
chr5 (103-155)||(26155792-26155844)
chr5 (104-156)||(35133025-35133076)
chr5 (104-152)||(35244019-35244067)
chr5 (107-155)||(40305752-40305800)
[»] scaffold0067 (1 HSPs)
scaffold0067 (109-238)||(39189-39320)
[»] scaffold0007 (1 HSPs)
scaffold0007 (107-237)||(242325-242456)
[»] chr6 (23 HSPs)
chr6 (104-238)||(10818322-10818457)
chr6 (107-154)||(5526832-5526879)
chr6 (104-154)||(23924944-23924994)
chr6 (100-150)||(30850004-30850054)
chr6 (104-238)||(33236057-33236191)
chr6 (107-239)||(26318414-26318547)
chr6 (99-238)||(1300721-1300861)
chr6 (107-151)||(31799030-31799074)
chr6 (99-139)||(32926746-32926786)
chr6 (104-143)||(2892942-2892981)
chr6 (98-184)||(31849210-31849297)
chr6 (98-238)||(30487309-30487449)
chr6 (99-155)||(4097599-4097655)
chr6 (107-151)||(6695067-6695111)
chr6 (104-151)||(2892694-2892741)
chr6 (109-155)||(4097322-4097368)
chr6 (99-155)||(13583820-13583876)
chr6 (107-155)||(15353472-15353520)
chr6 (107-155)||(15373686-15373734)
chr6 (99-139)||(17155457-17155497)
chr6 (104-152)||(17842488-17842536)
chr6 (99-139)||(32922446-32922486)
chr6 (107-155)||(34176658-34176706)
[»] scaffold0262 (1 HSPs)
scaffold0262 (99-235)||(16302-16439)
[»] scaffold0095 (1 HSPs)
scaffold0095 (107-155)||(8256-8304)
[»] scaffold0071 (1 HSPs)
scaffold0071 (107-150)||(52994-53037)
[»] scaffold0018 (1 HSPs)
scaffold0018 (109-148)||(69301-69340)
[»] scaffold0026 (1 HSPs)
scaffold0026 (110-155)||(1484-1529)
[»] scaffold0096 (1 HSPs)
scaffold0096 (104-152)||(6690-6737)


Alignment Details
Target: scaffold0783 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: scaffold0783
Description:

Target: scaffold0783; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 98 - 289
Target Start/End: Complemental strand, 6054 - 5866
Alignment:
Q  98 caagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaagacattttatcgtgtccataatataaaaaagaatagcaatcc 197  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||     
T  6054 caagtatgattcaagtattatatgatcatttatcatgttattatttcaattttttaatgacattttatcgtgtccataatata-aaaagaatagcaatct 5956  T
Q  198 ctcctctcctttcacctctcaaaccctccatccaaacacacatactcttttgttactaggagatccatttttcacaatctatctctgctcct 289  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| ||| ||||    
T  5955 ctcctctcctttcacctctcaaaccctccatccaaacacacatactc--ttgttactaggagatccatttttcacaatctatccctggtcct 5866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 98 - 221
Target Start/End: Complemental strand, 81555 - 81433
Alignment:
Q  98 caagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaagacattttatcgtgtccataatataaaaaagaatagcaatcc 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  81555 caagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaagacattttat-gtgtccatgatataaaaaagaatagcaatcc 81457  T
Q  198 ctcctctcctttcacctctcaaac 221  Q
    || |||||||||||||||||||||    
T  81456 ctactctcctttcacctctcaaac 81433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Complemental strand, 130135 - 130107
Alignment:
Q  249 gttactaggagatccatttttcacaatct 277  Q
    |||||||||||||||||||||||||||||    
T  130135 gttactaggagatccatttttcacaatct 130107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 99 - 171
Target Start/End: Complemental strand, 24243190 - 24243118
Alignment:
Q  99 aagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaagacattttatcgtgtc 171  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  24243190 aagtgtgattgaagtattatatgatcatttatcatgttattatttcaatttttaaaagacattttatagtgtc 24243118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 107 - 238
Target Start/End: Complemental strand, 12022278 - 12022145
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataatataaaaaagaatagcaatccctcctctc 205  Q
    |||||||||||||||||||||||||||||| ||| ||||||||| |||| | ||||||||  ||| | |||| |||||||||| || || |||||| |||    
T  12022278 ttgaagtattatatgatcatttatcatgttgttaattcaattttctaaaaatcattttataatgttcgtaatttaaaaaagaaaagtaagccctcccctc 12022179  T
Q  206 ctttcacc-tctcaaaccctccatccaaacacac 238  Q
    | ||| || ||||||||||||||||| |||||||    
T  12022178 ccttccccttctcaaaccctccatcctaacacac 12022145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 107 - 238
Target Start/End: Original strand, 43732796 - 43732928
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataatataaaaaagaatagcaatccctcctctc 205  Q
    ||||||||||||||||||||||||||| || ||| |||||||||  ||| | ||||||||  ||||| |||| |||||||||| || || |||||| |||    
T  43732796 ttgaagtattatatgatcatttatcatattgttaattcaattttcaaaaaatcattttataatgtccgtaatttaaaaaagaaaagtaaaccctcccctc 43732895  T
Q  206 ctttcacctctcaaaccctccatccaaacacac 238  Q
    | ||| ||||  |||||||||||||||||||||    
T  43732896 ccttcccctcctaaaccctccatccaaacacac 43732928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 99 - 238
Target Start/End: Complemental strand, 41103649 - 41103507
Alignment:
Q  99 aagtatgattgaagtattatatgatcatttatcatgttattatttcaa-ttttttaaagacattttatcgtgtccataa--tataaaaaagaatagcaat 195  Q
    |||| ||||||||||||||||||||| |||||||||||||| ||| || ||||||||| || ||| || ||||||||||  | |||||| ||| | |||     
T  41103649 aagtgtgattgaagtattatatgatcgtttatcatgttattgttttaatttttttaaaaacgtttcatagtgtccataatttttaaaaacgaaaatcaaa 41103550  T
Q  196 ccctcctctcctttcacctctcaaaccctccatccaaacacac 238  Q
    |||||| |||  ||| ||||  |||||||||||||||||||||    
T  41103549 ccctcccctctcttcccctcctaaaccctccatccaaacacac 41103507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 104 - 165
Target Start/End: Original strand, 5656188 - 5656249
Alignment:
Q  104 tgattgaagtattatatgatcatttatcatgttattatttcaattttttaaagacattttat 165  Q
    |||||||||| |||||||||||||||||||||| ||||||||| |||||||| |||||||||    
T  5656188 tgattgaagtgttatatgatcatttatcatgttcttatttcaaatttttaaaaacattttat 5656249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 99 - 235
Target Start/End: Complemental strand, 31543215 - 31543078
Alignment:
Q  99 aagtatgattgaagtattatatgatcatttatcatgttattatttcaa-ttttttaaagacattttatcgtgtccataatataaaaaagaatagcaatcc 197  Q
    |||| ||||||||||||||||||| | ||||| |||||| ||| | || ||||||||| |||||| || || ||| |||| |||||| ||| || || ||    
T  31543215 aagtgtgattgaagtattatatgaccgtttatgatgttaatatgttaacttttttaaaaacatttcatagtttccgtaatttaaaaatgaaaagtaaacc 31543116  T
Q  198 ctcctctcctttcacctctcaaaccctccatccaaaca 235  Q
    |||| |||| ||| ||||| ||||||||||||||||||    
T  31543115 ctcccctcccttcccctcttaaaccctccatccaaaca 31543078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 107 - 238
Target Start/End: Original strand, 16024263 - 16024394
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataatataaaaaagaatagcaatccctcctctc 205  Q
    |||||||||||||||||||||||||||||| ||| ||||||||| |||| | ||||||||  ||||| |||| | |||||||| || || | |||| |||    
T  16024263 ttgaagtattatatgatcatttatcatgttgttaattcaattttctaaaaatcattttataatgtccgtaat-ttaaaaagaaaagtaaactctcccctc 16024361  T
Q  206 ctttcacctctcaaaccctccatccaaacacac 238  Q
    | ||| ||||  ||| |||||||||||||||||    
T  16024362 ccttcccctcctaaatcctccatccaaacacac 16024394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 99 - 151
Target Start/End: Complemental strand, 38198192 - 38198140
Alignment:
Q  99 aagtatgattgaagtattatatgatcatttatcatgttattatttcaattttt 151  Q
    |||| ||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  38198192 aagtgtgattgaagtattatatgatcatatatcatgttgttatttcaattttt 38198140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 110 - 188
Target Start/End: Original strand, 29937614 - 29937693
Alignment:
Q  110 aagtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataatataaaaaagaa 188  Q
    ||||||||||||||||||||||||||| ||| ||||||||| |||| | ||||||||  |||||||||| | ||||||||    
T  29937614 aagtattatatgatcatttatcatgttgttaattcaattttctaaaaatcattttataatgtccataattttaaaaagaa 29937693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 107 - 207
Target Start/End: Original strand, 9933350 - 9933451
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgttattatttcaa-ttttttaaagacattttatcgtgtccataatataaaaaagaatagcaatccctcctctc 205  Q
    ||||| |||||||||||||||||||||||| ||| ||||| |||||||||  ||||||||  |||||| | | |||||||||| || || |||||| |||    
T  9933350 ttgaaatattatatgatcatttatcatgttgttaattcaatttttttaaaatcattttataatgtccaaattttaaaaaagaaaagtaaaccctcccctc 9933449  T
Q  206 ct 207  Q
    ||    
T  9933450 ct 9933451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 107 - 238
Target Start/End: Complemental strand, 8815276 - 8815144
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataatataaaaaagaatagcaatccctcctctc 205  Q
    |||||||||||||| ||||||||||||||| ||  ||||||||| |||| | ||||||||  ||||| |||| |||||||||| || ||  | ||  |||    
T  8815276 ttgaagtattatataatcatttatcatgttgttgattcaattttctaaaaatcattttataatgtccgtaatttaaaaaagaaaagtaagtcatcacctc 8815177  T
Q  206 ctttcacctctcaaaccctccatccaaacacac 238  Q
      ||| ||||  |||||||||||||||||||||    
T  8815176 tcttcccctcctaaaccctccatccaaacacac 8815144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 107 - 155
Target Start/End: Complemental strand, 9434434 - 9434386
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaa 155  Q
    |||||||||||||| ||||||||||||||| ||| ||||||||||||||    
T  9434434 ttgaagtattatattatcatttatcatgttgttaattcaattttttaaa 9434386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 106 - 170
Target Start/End: Original strand, 26167864 - 26167928
Alignment:
Q  106 attgaagtattatatgatcatttatcatgttattatttcaattttttaaagacattttatcgtgt 170  Q
    ||||||||||||||||||||||||||||||| || ||||||| |||| || | ||||||| ||||    
T  26167864 attgaagtattatatgatcatttatcatgtttttgtttcaatgtttttaaaatattttatagtgt 26167928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 107 - 155
Target Start/End: Original strand, 39449413 - 39449461
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaa 155  Q
    ||||||||||||||||||||| |||||||| ||| ||||||||||||||    
T  39449413 ttgaagtattatatgatcattaatcatgttgttaattcaattttttaaa 39449461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 137
Target Start/End: Complemental strand, 1026992 - 1026954
Alignment:
Q  99 aagtatgattgaagtattatatgatcatttatcatgtta 137  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  1026992 aagtatgattgaagtattatatgatcgtttatcatgtta 1026954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 149
Target Start/End: Complemental strand, 30581953 - 30581904
Alignment:
Q  99 aagtatgattgaagtattatatgatcatttatcatgttattatttcaattt 149  Q
    |||| |||||||||||||||||||||||||||||||||  |||||||||||    
T  30581953 aagtgtgattgaagtattatatgatcatttatcatgtt-gtatttcaattt 30581904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 151
Target Start/End: Original strand, 27487098 - 27487143
Alignment:
Q  106 attgaagtattatatgatcatttatcatgttattatttcaattttt 151  Q
    ||||||||||||||||||||||||||||||| || |||||| ||||    
T  27487098 attgaagtattatatgatcatttatcatgttgttctttcaactttt 27487143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 184
Target Start/End: Complemental strand, 29358482 - 29358397
Alignment:
Q  99 aagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaagacattttatcgtgtccataatataaaaa 184  Q
    |||| |||||||||||||||| |||| ||||| |||||| ||| | ||||||| ||| | ||||||| |||||| |||| ||||||    
T  29358482 aagtgtgattgaagtattataggatcgtttataatgttaatatgttaatttttaaaaaatattttatagtgtccgtaatttaaaaa 29358397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 155
Target Start/End: Original strand, 6453293 - 6453341
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaa 155  Q
    ||||||||||||||||| | |||||||||||||| ||||||||| ||||    
T  6453293 ttgaagtattatatgattacttatcatgttattaattcaattttctaaa 6453341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 238
Target Start/End: Original strand, 30365239 - 30365371
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataatataaaaaagaatagcaatccctcctctc 205  Q
    ||||||| |||||| ||||||||||||||| ||| ||||||||| |||| | ||||| ||  ||||  |||| |||||||||| || || |||||| |||    
T  30365239 ttgaagtgttatataatcatttatcatgttgttaattcaattttctaaaaatcatttcataatgtctgtaatttaaaaaagaaaaggaagccctcccctc 30365338  T
Q  206 ctttcacctctcaaaccctccatccaaacacac 238  Q
    | ||  |||   ||| |||||||||||||||||    
T  30365339 ccttacccttctaaatcctccatccaaacacac 30365371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 155
Target Start/End: Original strand, 43826441 - 43826489
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaa 155  Q
    |||||||||| ||||||||||||||||||| ||| ||||||||| ||||    
T  43826441 ttgaagtattttatgatcatttatcatgttgttaattcaattttctaaa 43826489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 106 - 149
Target Start/End: Complemental strand, 22591544 - 22591501
Alignment:
Q  106 attgaagtattatatgatcatttatcatgttattatttcaattt 149  Q
    ||||||||||||||||||||||||||||||| ||  ||||||||    
T  22591544 attgaagtattatatgatcatttatcatgttgttcattcaattt 22591501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 106 - 137
Target Start/End: Original strand, 31738531 - 31738562
Alignment:
Q  106 attgaagtattatatgatcatttatcatgtta 137  Q
    ||||||||||||||||||||||||||||||||    
T  31738531 attgaagtattatatgatcatttatcatgtta 31738562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 106 - 157
Target Start/End: Original strand, 34552669 - 34552720
Alignment:
Q  106 attgaagtattatatgatcatttatcatgttattatttcaattttttaaaga 157  Q
    |||||||||||||||||||||||||||| || || |||||||| ||| ||||    
T  34552669 attgaagtattatatgatcatttatcattttgttctttcaattgtttgaaga 34552720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 238
Target Start/End: Original strand, 16653049 - 16653190
Alignment:
Q  98 caagtatgattgaagtattatatgatcatttatcatgttattat-ttcaattttttaaagacattttatcgtgtccataatataaaaaagaatagcaatc 196  Q
    ||||| ||||||||||||||||||||| |||||  ||||| ||| || | ||||| ||| |||||| ||  ||||| |||| |||||| ||| |  || |    
T  16653049 caagtgtgattgaagtattatatgatcgtttattttgttaatatgttaactttttcaaaaacatttcataatgtccgtaatttaaaaatgaaaattaaac 16653148  T
Q  197 cctcctctcctttcacctctcaaaccctccatccaaacacac 238  Q
    ||||  |||| ||| ||||| ||||| | |||||||||||||    
T  16653149 cctctcctcccttcccctcttaaaccattcatccaaacacac 16653190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 155
Target Start/End: Complemental strand, 11575549 - 11575493
Alignment:
Q  99 aagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaa 155  Q
    |||| ||||| ||||||||||||||| |||||||||||| ||| | || ||||||||    
T  11575549 aagtgtgattaaagtattatatgatcgtttatcatgttaatatgttaactttttaaa 11575493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 155
Target Start/End: Complemental strand, 20472827 - 20472779
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaa 155  Q
    |||||||||||||||||||| |||||| || ||| ||||||||| ||||    
T  20472827 ttgaagtattatatgatcatatatcatattgttaattcaattttctaaa 20472779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 237
Target Start/End: Complemental strand, 30479861 - 30479721
Alignment:
Q  98 caagtatgattgaagtattatatgatcatttatcatgttattat-ttcaattttttaaagacattttatcgtgtccataatataaaaaagaatagcaatc 196  Q
    ||||| ||||||||||||||||| |||||||||||  ||| ||| || | ||||| |||||||||| || |||||  |||| |||||| ||| ||  | |    
T  30479861 caagtgtgattgaagtattatattatcatttatcaccttaatatgttaactttttaaaagacatttcatagtgtctgtaatttaaaaatgaaaagtgaac 30479762  T
Q  197 cctcctctcctttcacctctcaaaccctccatccaaacaca 237  Q
     |||| |||| | | ||||  ||| ||||||||||||||||    
T  30479761 tctcccctccatccccctcctaaatcctccatccaaacaca 30479721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 155
Target Start/End: Original strand, 34196418 - 34196466
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaa 155  Q
    |||||||||||||||||| |||||| |||| ||| ||||||||| ||||    
T  34196418 ttgaagtattatatgatcgtttatcttgttgttaattcaattttctaaa 34196466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 184
Target Start/End: Complemental strand, 37923207 - 37923135
Alignment:
Q  113 tattatatgatcatttatcatgttattatttcaa-ttttttaaagacattttatcgtgtccataatataaaaa 184  Q
    ||||||||||||||||||||||||| ||||| || | ||| ||| |||||| || |||| |||||| ||||||    
T  37923207 tattatatgatcatttatcatgttaatattttaactctttaaaaaacatttcatagtgttcataatttaaaaa 37923135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 107 - 238
Target Start/End: Original strand, 34641101 - 34641231
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaagacattttatcgtgtccataatataaaaaagaatagcaatccctcctctcc 206  Q
    |||||||||||||||||||||||||||||| ||| ||||||||| ||||  ||||||||  ||||| |||| |||||||||| || || |||||| ||||    
T  34641101 ttgaagtattatatgatcatttatcatgttgttaattcaattttctaaa-tcattttataatgtccgtaatttaaaaaagaaaagtaagccctcccctcc 34641199  T
Q  207 tttcacctctcaaaccctccatccaaacacac 238  Q
     ||| ||||  |||||||||||||||||||||    
T  34641200 cttcccctcctaaaccctccatccaaacacac 34641231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 107 - 188
Target Start/End: Original strand, 40858674 - 40858756
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataatataaaaaagaa 188  Q
    |||||||||||||||||||||||||||||| ||| |||||||||  ||||| ||||||||  ||||| |||| ||||||||||    
T  40858674 ttgaagtattatatgatcatttatcatgttgttaattcaattttcaaaagatcattttataatgtccgtaatttaaaaaagaa 40858756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 104 - 238
Target Start/End: Original strand, 24560323 - 24560458
Alignment:
Q  104 tgattgaagtattatatgatcatttatcatgttattat-ttcaattttttaaagacattttatcgtgtccataatataaaaaagaatagcaatccctcct 202  Q
    ||||||||||||||||||||| |||||||||||| ||| || | ||||| ||| |||||| || |||||  |||| |||||| ||| || || | ||||     
T  24560323 tgattgaagtattatatgatcgtttatcatgttaatatgttaactttttaaaaaacatttcatagtgtcggtaatttaaaaatgaaaagtaaactctccc 24560422  T
Q  203 ctcctttcacctctcaaaccctccatccaaacacac 238  Q
     ||| ||| ||||  |||||||||||||||||||||    
T  24560423 atccgttcccctcctaaaccctccatccaaacacac 24560458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 45663282 - 45663236
Alignment:
Q  104 tgattgaagtattatatgatcatttatcatgttattatttcaatttt 150  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||    
T  45663282 tgattgaagtattataagatcatttatcatgttgttatttcaatttt 45663236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 107 - 155
Target Start/End: Complemental strand, 16884106 - 16884059
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaa 155  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  16884106 ttgaagtattatatgatcatttatcatgttgtta-ttcaattttttaaa 16884059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 107 - 150
Target Start/End: Original strand, 42772141 - 42772184
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgttattatttcaatttt 150  Q
    |||||||||||||||||||||||||||||| ||| |||||||||    
T  42772141 ttgaagtattatatgatcatttatcatgttgttaattcaatttt 42772184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 184
Target Start/End: Original strand, 37807181 - 37807267
Alignment:
Q  99 aagtatgattgaagtattatatgatcatttatcatgttattat-ttcaattttttaaagacattttatcgtgtccataatataaaaa 184  Q
    |||| ||||||||||||||||||||| |||||||||||| ||| || | ||||| ||| |||||| || ||||||| ||| ||||||    
T  37807181 aagtgtgattgaagtattatatgatcgtttatcatgttaatatattaactttttaaaaaacatttcatagtgtccaaaatttaaaaa 37807267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 184
Target Start/End: Original strand, 651832 - 651917
Alignment:
Q  99 aagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaagacattttatcgtgtccataatataaaaa 184  Q
    |||| ||||| || ||||||| |||| ||| |||||||||||||| ||||||| ||| |||||| || || |||||||| ||||||    
T  651832 aagtgtgattaaaatattatacgatcctttgtcatgttattattttaatttttcaaaaacatttcatagtttccataatttaaaaa 651917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 136
Target Start/End: Complemental strand, 54996823 - 54996786
Alignment:
Q  99 aagtatgattgaagtattatatgatcatttatcatgtt 136  Q
    |||| |||||||||||||||||||||||||||||||||    
T  54996823 aagtgtgattgaagtattatatgatcatttatcatgtt 54996786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 238
Target Start/End: Original strand, 24253831 - 24253963
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgttattatttcaa-ttttttaaagacattttatcgtgtccataatataaaaaagaatagcaatccctcctctc 205  Q
    ||||||| |||||| ||||||||||||||| ||| ||||| ||| | |||  ||||||||  ||||| |||| |||||||||| || ||  ||| | |||    
T  24253831 ttgaagtgttatataatcatttatcatgttgttaattcaactttctaaaactcattttataatgtccgtaatttaaaaaagaaaagtaaatccttccctc 24253930  T
Q  206 ctttcacctctcaaaccctccatccaaacacac 238  Q
    | ||| |||   |||||||||||||||||||||    
T  24253931 ccttccccttctaaaccctccatccaaacacac 24253963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 238
Target Start/End: Original strand, 26135906 - 26136038
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataatataaaaaagaatagcaatccctcctctc 205  Q
    |||||||||||||| || ||||||||| || ||| |||||||||  ||| |  |||||||  ||||| |||| |||||||||| || || |||||| |||    
T  26135906 ttgaagtattatataattatttatcatattgttaattcaattttcaaaaaattattttataatgtccgtaatttaaaaaagaaaagtaaaccctccactc 26136005  T
Q  206 ctttcacctctcaaaccctccatccaaacacac 238  Q
    | ||| ||||  ||||||||||| ||| |||||    
T  26136006 ccttcccctcctaaaccctccattcaatcacac 26136038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 238
Target Start/End: Complemental strand, 41110464 - 41110324
Alignment:
Q  99 aagtatgattgaagtattatatgatcatttatcatgttattatttcaatttttta-aagacattttatcgtgtccataatataaaaaagaatagcaatcc 197  Q
    |||| ||||||||||||||||||||  |||||||||||| ||| | || |||||| || | |||| || |||||| |||| |||||| ||| || || ||    
T  41110464 aagtgtgattgaagtattatatgattgtttatcatgttaatatgttaactttttataaaatatttcatagtgtccgtaatttaaaaatgaaaagtaaacc 41110365  T
Q  198 ctcctctcctttcacctctcaaaccctccatccaaacacac 238  Q
     ||  |||| ||| ||||  ||| |||||||||||||||||    
T  41110364 ttctcctcccttcccctcctaaatcctccatccaaacacac 41110324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 155
Target Start/End: Original strand, 41414187 - 41414235
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaa 155  Q
    |||||||||||||||||||||||||||||| |||  |||||||| ||||    
T  41414187 ttgaagtattatatgatcatttatcatgttgttaactcaattttctaaa 41414235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 106 - 137
Target Start/End: Complemental strand, 18654736 - 18654705
Alignment:
Q  106 attgaagtattatatgatcatttatcatgtta 137  Q
    ||||||||||||||||||||||||||||||||    
T  18654736 attgaagtattatatgatcatttatcatgtta 18654705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 150
Target Start/End: Original strand, 44412470 - 44412513
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgttattatttcaatttt 150  Q
    ||||||||||||||||| |||||||||||| ||| |||||||||    
T  44412470 ttgaagtattatatgatgatttatcatgttgttaattcaatttt 44412513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 155
Target Start/End: Complemental strand, 27197781 - 27197736
Alignment:
Q  110 aagtattatatgatcatttatcatgttattatttcaattttttaaa 155  Q
    ||||||||||||||||| ||||||||| ||| ||||||||| ||||    
T  27197781 aagtattatatgatcatctatcatgttgttaattcaattttctaaa 27197736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 137
Target Start/End: Complemental strand, 27542069 - 27542036
Alignment:
Q  104 tgattgaagtattatatgatcatttatcatgtta 137  Q
    ||||||||||||||||||||| ||||||||||||    
T  27542069 tgattgaagtattatatgatcgtttatcatgtta 27542036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 2387903 - 2387859
Alignment:
Q  99 aagtatgattgaagtattatatgatcatttatcatgttattattt 143  Q
    |||| ||||| || |||||||||||| ||||||||||||||||||    
T  2387903 aagtgtgattaaattattatatgatcgtttatcatgttattattt 2387859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 139
Target Start/End: Original strand, 37237023 - 37237063
Alignment:
Q  99 aagtatgattgaagtattatatgatcatttatcatgttatt 139  Q
    |||| ||||||||||| || |||||||||||||||||||||    
T  37237023 aagtgtgattgaagtactaaatgatcatttatcatgttatt 37237063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 155
Target Start/End: Complemental strand, 42699747 - 42699699
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaa 155  Q
    ||||||||||||||||||||||||||| ||  || ||||||||| ||||    
T  42699747 ttgaagtattatatgatcatttatcatattgataattcaattttctaaa 42699699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 155
Target Start/End: Original strand, 46978536 - 46978584
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaa 155  Q
    |||||||||||||| ||||||||||||||| ||| || |||||| ||||    
T  46978536 ttgaagtattatataatcatttatcatgttgttaattaaattttataaa 46978584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 153
Target Start/End: Complemental strand, 48686001 - 48685961
Alignment:
Q  113 tattatatgatcatttatcatgttattatttcaatttttta 153  Q
    ||||||||||||  |||||||||| ||||||||||||||||    
T  48686001 tattatatgatcgattatcatgttgttatttcaatttttta 48685961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 155
Target Start/End: Original strand, 55428492 - 55428536
Alignment:
Q  111 agtattatatgatcatttatcatgttattatttcaattttttaaa 155  Q
    |||||||||||||||||||||| ||| ||| ||||||||| ||||    
T  55428492 agtattatatgatcatttatcacgttgttaattcaattttctaaa 55428536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 8e-24; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 107 - 238
Target Start/End: Original strand, 33519157 - 33519289
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataatataaaaaagaatagcaatccctcctctc 205  Q
    |||||||||||||||||||||||||||||| ||| ||||||||| |||| | ||||||||  ||||  |||| |||| ||||| || ||||||||| |||    
T  33519157 ttgaagtattatatgatcatttatcatgttgttaattcaattttctaaaaatcattttataatgtctgtaatttaaagaagaaaagtaatccctcccctc 33519256  T
Q  206 ctttcacctctcaaaccctccatccaaacacac 238  Q
    | ||| ||||  |||||||||||||||||||||    
T  33519257 ccttcccctcctaaaccctccatccaaacacac 33519289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 107 - 235
Target Start/End: Original strand, 37620883 - 37621012
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataatataaaaaagaatagcaatccctcctctc 205  Q
    |||||||||||||| ||| |||||||||||  || |||||||||  ||| | ||||||||  |||||||||| |||||||||| ||||| |||||| |||    
T  37620883 ttgaagtattatataatcttttatcatgttgataattcaattttccaaaaatcattttataatgtccataatttaaaaaagaaaagcaaaccctcccctc 37620982  T
Q  206 ctttcacctctcaaaccctccatccaaaca 235  Q
    | ||| | ||||||||||||||||||||||    
T  37620983 ccttcccttctcaaaccctccatccaaaca 37621012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 99 - 238
Target Start/End: Complemental strand, 40196675 - 40196535
Alignment:
Q  99 aagtatgattgaagtattatatgatcatttatcatgttattatttcaatttttta-aagacattttatcgtgtccataatataaaaaagaatagcaatcc 197  Q
    |||| ||||||||||||||||||||  ||||||| |||  ||| | || |||||| || ||||||||| |||||| ||||  ||||| ||| || || ||    
T  40196675 aagtgtgattgaagtattatatgattgtttatcaggttgatatgttaactttttataaaacattttatagtgtccgtaattcaaaaatgaaaagtaaacc 40196576  T
Q  198 ctcctctcctttcacctctcaaaccctccatccaaacacac 238  Q
    ||||||||| ||| |||| ||||||||||||||||||||||    
T  40196575 ctcctctcccttcccctcccaaaccctccatccaaacacac 40196535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 106 - 238
Target Start/End: Complemental strand, 30592389 - 30592256
Alignment:
Q  106 attgaagtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataatataaaaaagaatagcaatccctcctct 204  Q
    |||||||||||||||||| ||||||||| | ||||||||||||||||||| | |||||||| |||||  |||| |||||||||| || || ||||||  |    
T  30592389 attgaagtattatatgattatttatcatatgattatttcaattttttaaaaatcattttatagtgtctgtaatttaaaaaagaaaagtaagccctccctt 30592290  T
Q  205 cctttcacctctcaaaccctccatccaaacacac 238  Q
    || ||  ||||  ||| |||||||||||| ||||    
T  30592289 ccctttccctcctaaatcctccatccaaatacac 30592256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 107 - 238
Target Start/End: Complemental strand, 36267688 - 36267556
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataatataaaaaagaatagcaatccctcctctc 205  Q
    ||||||||||||||||||||||||||| || ||  ||||||||| |||| | ||||||||  | ||| |||| |||||||||| |  || |||||| |||    
T  36267688 ttgaagtattatatgatcatttatcatattgttgattcaattttctaaaaatcattttataatatccgtaatttaaaaaagaaaactaagccctcccctc 36267589  T
Q  206 ctttcacctctcaaaccctccatccaaacacac 238  Q
    | ||| ||||  |||||||||||||||||||||    
T  36267588 ccttcccctcctaaaccctccatccaaacacac 36267556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 99 - 151
Target Start/End: Complemental strand, 18127385 - 18127333
Alignment:
Q  99 aagtatgattgaagtattatatgatcatttatcatgttattatttcaattttt 151  Q
    |||| |||||||||||||||||||||||||||||||||| |||||||| ||||    
T  18127385 aagtgtgattgaagtattatatgatcatttatcatgttactatttcaagtttt 18127333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 99 - 201
Target Start/End: Complemental strand, 23116403 - 23116299
Alignment:
Q  99 aagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaa-agaca-ttttatcgtgtccataatataaaaaagaatagcaatc 196  Q
    |||| ||||||||||||||||| |||||||||||||||  |||||||||||||||| | ||| |||||| |||||  |||| |||||||||| || || |    
T  23116403 aagtgtgattgaagtattatataatcatttatcatgttgctatttcaattttttaataaacacttttatagtgtctgtaatttaaaaaagaaaagtaagc 23116304  T
Q  197 cctcc 201  Q
    |||||    
T  23116303 cctcc 23116299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 107 - 238
Target Start/End: Complemental strand, 48881693 - 48881561
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaagac-attttatcgtgtccataatataaaaaagaatagcaatccctcctctc 205  Q
    |||||| ||||||| ||||||||||||||| ||| ||||||||| | || |  |||||||  ||||| |||| |||||||||| || || || ||| |||    
T  48881693 ttgaagcattatataatcatttatcatgttgttaattcaattttctgaaaattattttataatgtccgtaatttaaaaaagaaaagtaagccatcccctc 48881594  T
Q  206 ctttcacctctcaaaccctccatccaaacacac 238  Q
    | ||| ||||  |||||||||||||||||||||    
T  48881593 ccttcccctcctaaaccctccatccaaacacac 48881561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 99 - 201
Target Start/End: Complemental strand, 33655251 - 33655148
Alignment:
Q  99 aagtatgattgaagtattatatgatcatttatcatgttattat-ttcaattttttaaagacattttatcgtgtccataatataaaaaagaatagcaatcc 197  Q
    |||| |||||||||||||||||||||||||||||||||| ||| || | ||||| ||| |||||| || |||||| |||| |||||| ||| || || ||    
T  33655251 aagtgtgattgaagtattatatgatcatttatcatgttaatatgttaactttttaaaaaacatttcatagtgtccgtaatttaaaaatgaaaagtaaacc 33655152  T
Q  198 ctcc 201  Q
    ||||    
T  33655151 ctcc 33655148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 107 - 188
Target Start/End: Complemental strand, 28074238 - 28074156
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataatataaaaaagaa 188  Q
    |||||||||||||||||||||||||| ||| ||| ||||||||| |||| | ||||||||  ||||| |||| ||||||||||    
T  28074238 ttgaagtattatatgatcatttatcaggttgttaattcaattttctaaaaatcattttataatgtccgtaatttaaaaaagaa 28074156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 107 - 155
Target Start/End: Original strand, 16833804 - 16833852
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaa 155  Q
    ||||||||||| |||||||||||||||||||||| ||||||||| ||||    
T  16833804 ttgaagtattacatgatcatttatcatgttattaattcaattttataaa 16833852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 99 - 151
Target Start/End: Original strand, 20393702 - 20393754
Alignment:
Q  99 aagtatgattgaagtattatatgatcatttatcatgttattatttcaattttt 151  Q
    |||| ||||||||||||||||||||||||||| |||||| |||||||| ||||    
T  20393702 aagtgtgattgaagtattatatgatcatttataatgttactatttcaagtttt 20393754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 99 - 238
Target Start/End: Complemental strand, 41497100 - 41496960
Alignment:
Q  99 aagtatgattgaagtattatatgatcatttatcatgttattat-ttcaattttttaaagacattttatcgtgtccataatataaaaaagaatagcaatcc 197  Q
    |||| ||||||||| |||||||||||||||||||||||| ||| || ||||||| ||| ||||||  |  ||||| |||| ||||||  || || ||  |    
T  41497100 aagtgtgattgaagaattatatgatcatttatcatgttaatatgttaaatttttaaaaaacatttcctattgtccgtaatttaaaaataaaaagtaaatc 41497001  T
Q  198 ctcctctcctttcacctctcaaaccctccatccaaacacac 238  Q
     ||| |||| ||| ||||  |||||||||||||||||||||    
T  41497000 atcccctcccttcccctcctaaaccctccatccaaacacac 41496960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 107 - 150
Target Start/End: Complemental strand, 12670971 - 12670928
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgttattatttcaatttt 150  Q
    |||||||||||||||||||||||||||||| ||| |||||||||    
T  12670971 ttgaagtattatatgatcatttatcatgttgttaattcaatttt 12670928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 7791825 - 7791871
Alignment:
Q  104 tgattgaagtattatatgatcatttatcatgttattatttcaatttt 150  Q
    ||||| |||||||||||||| |||||||||||| |||||||||||||    
T  7791825 tgatttaagtattatatgattatttatcatgtttttatttcaatttt 7791871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 238
Target Start/End: Original strand, 18231693 - 18231827
Alignment:
Q  105 gattgaagtattatatgatcatttatcatgttattat-ttcaattttttaaagacattttatcgtgtccataatataaaaaagaatagcaatccctcctc 203  Q
    |||||||||||||||||||| |||||||||||| ||| || | ||||| ||| |||||| || ||||   |||| |||||| ||| || ||  ||||| |    
T  18231693 gattgaagtattatatgatcgtttatcatgttaatatgttaactttttaaaaaacatttcatagtgtttgtaatttaaaaatgaaaagtaaatcctcccc 18231792  T
Q  204 tcctttcacctctcaaaccctccatccaaacacac 238  Q
    ||| ||| ||||  |||| ||||||||||||||||    
T  18231793 tcccttcccctcctaaacgctccatccaaacacac 18231827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 148
Target Start/End: Original strand, 48094005 - 48094043
Alignment:
Q  110 aagtattatatgatcatttatcatgttattatttcaatt 148  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  48094005 aagtattatatgatcatttatcattttattatttcaatt 48094043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 136
Target Start/End: Complemental strand, 18063704 - 18063667
Alignment:
Q  99 aagtatgattgaagtattatatgatcatttatcatgtt 136  Q
    |||| |||||||||||||||||||||||||||||||||    
T  18063704 aagtgtgattgaagtattatatgatcatttatcatgtt 18063667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 184
Target Start/End: Complemental strand, 22163252 - 22163167
Alignment:
Q  99 aagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaagacattttatcgtgtccataatataaaaa 184  Q
    |||| ||||||||||||||||||||| |||||||||||| ||| | | ||| | ||| |||||| || |||||| |||| ||||||    
T  22163252 aagtgtgattgaagtattatatgatcgtttatcatgttaatatgttactttctaaaaaacatttcatagtgtccgtaatttaaaaa 22163167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 184
Target Start/End: Complemental strand, 22221960 - 22221875
Alignment:
Q  99 aagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaagacattttatcgtgtccataatataaaaa 184  Q
    |||| ||||||||||||||||||||| |||||||||||| ||| | | ||| | ||| |||||| || |||||| |||| ||||||    
T  22221960 aagtgtgattgaagtattatatgatcgtttatcatgttaatatgttactttctaaaaaacatttcatagtgtccgtaatttaaaaa 22221875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 235
Target Start/End: Complemental strand, 4833669 - 4833537
Alignment:
Q  104 tgattgaagtattatatgatcatttatcatgttattatttcaatttttta-aagacattttatcgtgtccataatataaaaaagaatagcaatccctcct 202  Q
    ||||| ||||||||||||||  |||||||||||| ||  | || |||||| || |||||| || |||||  |||| |||||| ||| || || ||||||     
T  4833669 tgatttaagtattatatgattgtttatcatgttaataggttaactttttataaaacatttcatagtgtctgtaatttaaaaatgaaaagtaaaccctccc 4833570  T
Q  203 ctcctttcacctctcaaaccctccatccaaaca 235  Q
    |||| ||| ||||  ||||||||||||||||||    
T  4833569 ctcccttcccctcctaaaccctccatccaaaca 4833537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 238
Target Start/End: Original strand, 47390961 - 47391097
Alignment:
Q  104 tgattgaagtattatatga-tcatttatcatgttattatttcaattttttaaagaca-ttttatcgtgtccataatataaaaaagaatagcaatccctcc 201  Q
    ||||||||||||||||||| |  |||||||||||| ||| | ||  ||||||| |   |||||| |||||| |||| |||||| ||| | ||| | ||||    
T  47390961 tgattgaagtattatatgacttgtttatcatgttaatatgttaacattttaaaaaatgttttatagtgtccgtaatttaaaaatgaaaaccaaactctcc 47391060  T
Q  202 tctcctttcacctctcaaaccctccatccaaacacac 238  Q
     |||| ||| ||||| |||||||||||||||||||||    
T  47391061 cctcccttcccctcttaaaccctccatccaaacacac 47391097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 155
Target Start/End: Complemental strand, 3215994 - 3215947
Alignment:
Q  108 tgaagtattatatgatcatttatcatgttattatttcaattttttaaa 155  Q
    |||||||||||||||||||||||||| || ||| ||||||||| ||||    
T  3215994 tgaagtattatatgatcatttatcatattgttaattcaattttctaaa 3215947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 26365874 - 26365920
Alignment:
Q  104 tgattgaagtattatatgatcatttatcatgttattatttcaatttt 150  Q
    ||||||||||||||||||||  ||| |||||||||||||| ||||||    
T  26365874 tgattgaagtattatatgattgtttctcatgttattattttaatttt 26365920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 155
Target Start/End: Complemental strand, 19261977 - 19261929
Alignment:
Q  104 tgattgaagtattatatgatcatttatcatgttattatttcaattttttaaa 155  Q
    ||||||||||| |||||||||||||||||||   || |||||||||||||||    
T  19261977 tgattgaagtactatatgatcatttatcatg---ttctttcaattttttaaa 19261929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 136
Target Start/End: Original strand, 37562737 - 37562774
Alignment:
Q  99 aagtatgattgaagtattatatgatcatttatcatgtt 136  Q
    |||| |||||||||||||||||||||| ||||||||||    
T  37562737 aagtgtgattgaagtattatatgatcaattatcatgtt 37562774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 143
Target Start/End: Original strand, 17852972 - 17853016
Alignment:
Q  99 aagtatgattgaagtattatatgatcatttatcatgttattattt 143  Q
    |||| ||||||| ||||||||||||| ||||||||||| ||||||    
T  17852972 aagtgtgattgaggtattatatgatcgtttatcatgttgttattt 17853016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 155
Target Start/End: Original strand, 21857456 - 21857504
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaa 155  Q
    ||||| |||| ||||||||||||||||||| ||| ||||||||| ||||    
T  21857456 ttgaaatattgtatgatcatttatcatgttgttaattcaattttctaaa 21857504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 155
Target Start/End: Complemental strand, 24970308 - 24970252
Alignment:
Q  99 aagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaa 155  Q
    |||| ||||||||||||||||||||| ||||||| |||| ||| | || ||||||||    
T  24970308 aagtgtgattgaagtattatatgatcgtttatcaagttaatatgttaactttttaaa 24970252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 29814398 - 29814358
Alignment:
Q  115 ttatatgatcatttatcatgttattatttcaattttttaaa 155  Q
    |||||||||||| ||||||||||||  ||||||||||||||    
T  29814398 ttatatgatcatctatcatgttattcgttcaattttttaaa 29814358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 135
Target Start/End: Complemental strand, 37417776 - 37417740
Alignment:
Q  99 aagtatgattgaagtattatatgatcatttatcatgt 135  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  37417776 aagtgtgattgaagtattatatgatcgtttatcatgt 37417740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 185
Target Start/End: Complemental strand, 37929949 - 37929869
Alignment:
Q  106 attgaagtattatatgatcatttatcatg-ttattatttcaattttttaaagacattttatcgtgtccataatataaaaaa 185  Q
    ||||||||||||||  ||||||| ||||| || ||||||| || ||||||| | ||||||| || |||||||| |||||||    
T  37929949 attgaagtattataaaatcatttgtcatgtttgttatttcgatattttaaaaatattttatagtatccataatttaaaaaa 37929869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 150
Target Start/End: Original strand, 48015323 - 48015359
Alignment:
Q  114 attatatgatcatttatcatgttattatttcaatttt 150  Q
    ||||||||||||||||||||||| ||| |||||||||    
T  48015323 attatatgatcatttatcatgttgttaattcaatttt 48015359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 8e-24; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 110 - 237
Target Start/End: Original strand, 35512909 - 35513037
Alignment:
Q  110 aagtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataatataaaaaagaatagcaatccctcctctcctt 208  Q
    ||||||||||||||||||||||||||| ||| ||||||||| |||| | ||||||||  |||||||||| ||||||| || || || |||||| |||| |    
T  35512909 aagtattatatgatcatttatcatgttgttaattcaattttctaaaaatcattttataatgtccataatttaaaaaataaaagtaagccctcccctccct 35513008  T
Q  209 tcacctctcaaaccctccatccaaacaca 237  Q
    || ||||  ||||||||||||||||||||    
T  35513009 tcccctcctaaaccctccatccaaacaca 35513037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 98 - 238
Target Start/End: Complemental strand, 38510038 - 38509897
Alignment:
Q  98 caagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaa-gacattttatcgtgtccataatataaaaaagaatagcaatc 196  Q
    ||||| ||||||||||||||||| ||| |||||| |||||  || | ||||||||||| ||||||| || |||||| |||| |||||| ||| ||  | |    
T  38510038 caagtgtgattgaagtattatattatcgtttatcgtgttaagatgttaattttttaaaagacatttcatagtgtccgtaatttaaaaatgaaaagtgaac 38509939  T
Q  197 cctcctctcctttcacctctcaaaccctccatccaaacacac 238  Q
    |||||||||| ||| ||||  |||||||| ||||||||||||    
T  38509938 cctcctctcccttcccctcctaaaccctctatccaaacacac 38509897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 99 - 238
Target Start/End: Complemental strand, 40095076 - 40094936
Alignment:
Q  99 aagtatgattgaagtattatatgatcatttatcatgttattatttcaatttttta-aagacattttatcgtgtccataatataaaaaagaatagcaatcc 197  Q
    |||| ||||||||||||||||||||| |||||||||||| | | | || |||||| || |||||| || |||||| |||| |||||| ||| || || ||    
T  40095076 aagtgtgattgaagtattatatgatcgtttatcatgttaatttgttaactttttataaaacatttcatagtgtccgtaatttaaaaatgaaaagtaaacc 40094977  T
Q  198 ctcctctcctttcacctctcaaaccctccatccaaacacac 238  Q
    |||| || | ||| ||||  |||||||||||||||||||||    
T  40094976 ctccccttccttcccctcctaaaccctccatccaaacacac 40094936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 109 - 155
Target Start/End: Original strand, 17622648 - 17622694
Alignment:
Q  109 gaagtattatatgatcatttatcatgttattatttcaattttttaaa 155  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||    
T  17622648 gaagtattatatgatcacttatcatgttattaattcaattttttaaa 17622694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 99 - 153
Target Start/End: Complemental strand, 44211048 - 44210994
Alignment:
Q  99 aagtatgattgaagtattatatgatcatttatcatgttattatttcaatttttta 153  Q
    |||| ||||||||||||||||||||| ||||||||||| |||||| |||||||||    
T  44211048 aagtgtgattgaagtattatatgatcgtttatcatgttgttattttaatttttta 44210994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 107 - 238
Target Start/End: Complemental strand, 1085625 - 1085492
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataatataaaaaa-gaatagcaatccctcctct 204  Q
    |||||||||||||||||||||||||||| | ||| ||||||||| |||| | |||||| |  ||||| |||| ||||||| ||| || ||  ||||| ||    
T  1085625 ttgaagtattatatgatcatttatcatgctgttagttcaattttctaaaaatcattttctaatgtccgtaatttaaaaaaggaaaagtaagtcctcccct 1085526  T
Q  205 cctttcacctctcaaaccctccatccaaacacac 238  Q
    || | | ||||  |||||||||||||||||||||    
T  1085525 ccatccccctcctaaaccctccatccaaacacac 1085492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 238
Target Start/End: Original strand, 41498505 - 41498646
Alignment:
Q  99 aagtatgattgaagtattatatgatcatttatcatgttattatttcaatttttta-aagacattttatcgtgtccataatataaaaaagaatagcaatcc 197  Q
    |||| ||||||||||||||||||||| |||||||||||| ||| | || |||||| || |||||| || |||||| |||| |||||| ||| || ||  |    
T  41498505 aagtgtgattgaagtattatatgatcgtttatcatgttaatatgttaactttttataaaacatttcatagtgtccgtaatttaaaaatgaaaagtaaatc 41498604  T
Q  198 ctcctct-cctttcacctctcaaaccctccatccaaacacac 238  Q
    |||| || |||| | ||||  |||| ||||||||||||||||    
T  41498605 ctcccctcccttacccctcctaaactctccatccaaacacac 41498646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 107 - 155
Target Start/End: Original strand, 35927922 - 35927970
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaa 155  Q
    |||||||||||||||||||||||||||||| ||| ||||||||| ||||    
T  35927922 ttgaagtattatatgatcatttatcatgttgttaattcaattttctaaa 35927970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 99 - 152
Target Start/End: Original strand, 49832648 - 49832698
Alignment:
Q  99 aagtatgattgaagtattatatgatcatttatcatgttattatttcaatttttt 152  Q
    |||| |||||||||||||||||   |||||||||||||||||||||||||||||    
T  49832648 aagtgtgattgaagtattatat---catttatcatgttattatttcaatttttt 49832698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 107 - 150
Target Start/End: Complemental strand, 51303519 - 51303476
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgttattatttcaatttt 150  Q
    |||||||||||||||||||||||||||||| ||| |||||||||    
T  51303519 ttgaagtattatatgatcatttatcatgttgttaattcaatttt 51303476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 238
Target Start/End: Original strand, 20607328 - 20607458
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataat-ataaaaaagaatagcaatccctcctct 204  Q
    ||||||||||||||||| || ||||||||||  |||| ||||||  ||| | ||||||||  |||||||||| | |||||| ||||| || |||||| ||    
T  20607328 ttgaagtattatatgataatatatcatgtta--attt-aattttcaaaaaatcattttataatgtccataattaaaaaaaaaaatagtaaaccctcccct 20607424  T
Q  205 cctttcacctctcaaaccctccatccaaacacac 238  Q
    || ||| ||||  |||||||||||||||||||||    
T  20607425 cccttcccctcctaaaccctccatccaaacacac 20607458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 188
Target Start/End: Original strand, 33643377 - 33643459
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataatataaaaaagaa 188  Q
    ||||||||||||||||||||| ||||| |||||| ||||||||| |||| | |||||||   ||| |||||| ||||||||||    
T  33643377 ttgaagtattatatgatcattcatcatattattaattcaattttctaaaaatcattttaaaatgttcataatttaaaaaagaa 33643459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 188
Target Start/End: Complemental strand, 13387049 - 13386972
Alignment:
Q  112 gtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataatataaaaaagaa 188  Q
    ||||||||||||||||||||||||| ||| ||||||||| |||| | | ||||||  ||||||||||  |||||||||    
T  13387049 gtattatatgatcatttatcatgttgttaattcaattttctaaaaatcgttttatgatgtccataattaaaaaaagaa 13386972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 155
Target Start/End: Complemental strand, 36285718 - 36285661
Alignment:
Q  98 caagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaa 155  Q
    ||||| ||||||||||||||||||||| |||||||||||| ||| | || ||||||||    
T  36285718 caagtgtgattgaagtattatatgatcgtttatcatgttaatatgttaactttttaaa 36285661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 177
Target Start/End: Original strand, 7444595 - 7444675
Alignment:
Q  98 caagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataat 177  Q
    ||||| ||||||||||||||||||||| ||||| |||||| ||| | || |||||||| | |||||||| |||||| ||||    
T  7444595 caagtgtgattgaagtattatatgatcgtttattatgttaatatgttaactttttaaaaatcattttatagtgtccgtaat 7444675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 106 - 238
Target Start/End: Complemental strand, 35349598 - 35349469
Alignment:
Q  106 attgaagtattatatgatcatttatcatgttattatttcaatttttta-aagacattttatcgtgtccataatataaaaaagaatagcaatccctcctct 204  Q
    ||||||||||||||||||  |||||||||||| ||| | || |||||| || |||||| |  |||||| |||| |||||| ||| || || |||||| |     
T  35349598 attgaagtattatatgattgtttatcatgttaatatgttaactttttataaaacatttca--gtgtccgtaatttaaaaatgaaaagtaaaccctccccc 35349501  T
Q  205 cctttcacctctcaaaccctccatccaaacacac 238  Q
    ||  || ||||| |||||||||||||||||||||    
T  35349500 cc--tcccctcttaaaccctccatccaaacacac 35349469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 137
Target Start/End: Complemental strand, 20576270 - 20576236
Alignment:
Q  103 atgattgaagtattatatgatcatttatcatgtta 137  Q
    |||||||||||||||||||||| ||||||||||||    
T  20576270 atgattgaagtattatatgatcgtttatcatgtta 20576236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 184
Target Start/End: Complemental strand, 32951461 - 32951375
Alignment:
Q  99 aagtatgattgaagtattatatgatcatttatcatgttattatttcaatttttta-aagacattttatcgtgtccataatataaaaa 184  Q
    |||| |||||||||||||||| |||| |||||||||||| ||| | || |||||| || |||||| || |||||| |||| ||||||    
T  32951461 aagtgtgattgaagtattatacgatcgtttatcatgttaatatgttaactttttataaaacatttcattgtgtccgtaatttaaaaa 32951375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 188
Target Start/End: Original strand, 47071160 - 47071242
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataatataaaaaagaa 188  Q
    ||||| |||| ||||||||||||||||||| ||| || |||||| |||| | ||||||||  ||||| |||| ||||||||||    
T  47071160 ttgaaatattttatgatcatttatcatgttgttaattaaattttctaaaaatcattttataatgtccgtaatttaaaaaagaa 47071242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 137
Target Start/End: Complemental strand, 50744424 - 50744386
Alignment:
Q  99 aagtatgattgaagtattatatgatcatttatcatgtta 137  Q
    |||| ||||||||||||||||||||| ||||||||||||    
T  50744424 aagtgtgattgaagtattatatgatcgtttatcatgtta 50744386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 137
Target Start/End: Complemental strand, 49946726 - 49946693
Alignment:
Q  104 tgattgaagtattatatgatcatttatcatgtta 137  Q
    |||||||||||||||||||| |||||||||||||    
T  49946726 tgattgaagtattatatgataatttatcatgtta 49946693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 155
Target Start/End: Original strand, 2506648 - 2506696
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaa 155  Q
    |||||||||||||||||||||||| || || ||| ||| ||||||||||    
T  2506648 ttgaagtattatatgatcatttattatattgttaattcgattttttaaa 2506696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 155
Target Start/End: Original strand, 8529900 - 8529956
Alignment:
Q  99 aagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaa 155  Q
    |||| ||||||||||||||||||||| |||| ||||||| ||| | || ||||||||    
T  8529900 aagtgtgattgaagtattatatgatcgtttaccatgttaatatgttaactttttaaa 8529956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Complemental strand, 13601478 - 13601450
Alignment:
Q  249 gttactaggagatccatttttcacaatct 277  Q
    |||||||||||||||||||||||||||||    
T  13601478 gttactaggagatccatttttcacaatct 13601450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 238
Target Start/End: Original strand, 30010441 - 30010573
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgttattat-ttcaattttttaaagacattttatcgtgtccataatataaaaaagaatagcaatccctcctctc 205  Q
    |||||||||||||||||| ||||| |||||| ||| || | | ||| ||| ||||||  | |||||| |||| | |||| ||| || || |||||| |||    
T  30010441 ttgaagtattatatgatcgtttataatgttaatatgttaactatttaaaaaacatttcgtagtgtccgtaatttcaaaatgaaaagtaaaccctcccctc 30010540  T
Q  206 ctttcacctctcaaaccctccatccaaacacac 238  Q
    | ||| |||   |||||||||||||||||||||    
T  30010541 ccttccccttctaaaccctccatccaaacacac 30010573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 136
Target Start/End: Original strand, 51582087 - 51582119
Alignment:
Q  104 tgattgaagtattatatgatcatttatcatgtt 136  Q
    |||||||||||||| ||||||||||||||||||    
T  51582087 tgattgaagtattacatgatcatttatcatgtt 51582119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 136
Target Start/End: Complemental strand, 52711825 - 52711797
Alignment:
Q  108 tgaagtattatatgatcatttatcatgtt 136  Q
    |||||||||||||||||||||||||||||    
T  52711825 tgaagtattatatgatcatttatcatgtt 52711797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 44)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 107 - 238
Target Start/End: Original strand, 37761573 - 37761705
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataatataaaaaagaatagcaatccctcctctc 205  Q
    ||||||| |||||| ||||||||||||||| ||| ||||||||| |||| | ||||| ||  |||||||||| |||||||||| || || |||||| |||    
T  37761573 ttgaagtgttatataatcatttatcatgttgttaattcaattttctaaaaatcatttcataatgtccataatttaaaaaagaaaaggaagccctcccctc 37761672  T
Q  206 ctttcacctctcaaaccctccatccaaacacac 238  Q
    | ||| ||| | ||| |||||||||||||||||    
T  37761673 ccttccccttttaaatcctccatccaaacacac 37761705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 99 - 226
Target Start/End: Complemental strand, 21695032 - 21694905
Alignment:
Q  99 aagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataatataaaaaagaatagcaatcc 197  Q
    |||| |||||||||||||||||||||| ||||||| || |||||||||||| ||||| | |||||||| |||||| |||| |||||||||| || || ||    
T  21695032 aagtgtgattgaagtattatatgatca-ttatcattttgttatttcaatttattaaaaaccattttatagtgtccgtaatttaaaaaagaaaagtaagcc 21694934  T
Q  198 ctcctctcctttcacctctcaaaccctcc 226  Q
    ||||  ||| ||| ||||  |||||||||    
T  21694933 ctcccgtcccttcccctcctaaaccctcc 21694905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 107 - 238
Target Start/End: Complemental strand, 54576462 - 54576330
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataatataaaaaagaatagcaatccctcctctc 205  Q
    |||||||||||||| ||||||||||| ||| ||| ||||||||| || | | ||||||||  ||||| |||| |||||||||| || || |||||| |||    
T  54576462 ttgaagtattatataatcatttatcacgttgttaattcaattttctataaatcattttataatgtccgtaatctaaaaaagaaaagtaagccctcccctc 54576363  T
Q  206 ctttcacctctcaaaccctccatccaaacacac 238  Q
    | ||| |||   |||||||||||||||||||||    
T  54576362 ccttccccttctaaaccctccatccaaacacac 54576330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 107 - 188
Target Start/End: Complemental strand, 4437560 - 4437478
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataatataaaaaagaa 188  Q
    ||||||||||||||||||| |||||||||| ||| |||||||||||||| | ||||||||  | |||||||| ||||||||||    
T  4437560 ttgaagtattatatgatcaattatcatgttgttaattcaattttttaaaaatcattttataatatccataatttaaaaaagaa 4437478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 99 - 184
Target Start/End: Original strand, 6891461 - 6891547
Alignment:
Q  99 aagtatgattgaagtattatatgatcatttatcatgttattatttcaa-ttttttaaagacattttatcgtgtccataatataaaaa 184  Q
    |||| ||||||||||||||||||||| ||||| |||||||||||| || ||||||||| ||| || || ||||||||||| ||||||    
T  6891461 aagtgtgattgaagtattatatgatcgtttataatgttattattttaatttttttaaaaacaattcatagtgtccataatttaaaaa 6891547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 99 - 184
Target Start/End: Original strand, 55510271 - 55510356
Alignment:
Q  99 aagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaagacattttatcgtgtccataatataaaaa 184  Q
    |||| ||| |||||||||||||||||||| |||||||| ||||||||||||||| || | ||||||| |||| | |||| ||||||    
T  55510271 aagtgtgactgaagtattatatgatcattcatcatgttgttatttcaatttttttaaaatattttatagtgttcgtaatttaaaaa 55510356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 99 - 155
Target Start/End: Original strand, 11842408 - 11842464
Alignment:
Q  99 aagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaa 155  Q
    |||| |||||||||||||||||||||||||||||| || | ||||||||||||||||    
T  11842408 aagtctgattgaagtattatatgatcatttatcatattgtaatttcaattttttaaa 11842464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 99 - 155
Target Start/End: Complemental strand, 17938250 - 17938194
Alignment:
Q  99 aagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaa 155  Q
    |||| ||||||||||||||||||||| |||||||||||||||||| || ||||||||    
T  17938250 aagtgtgattgaagtattatatgatcgtttatcatgttattattttaaatttttaaa 17938194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 107 - 188
Target Start/End: Original strand, 22186828 - 22186910
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataatataaaaaagaa 188  Q
    |||||||||||||| ||||||||||||||| ||| ||||||||| |||| | ||||||||  ||||| |||| ||||||||||    
T  22186828 ttgaagtattatataatcatttatcatgttgttaattcaattttctaaaaatcattttataatgtccgtaatttaaaaaagaa 22186910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 107 - 188
Target Start/End: Original strand, 43961519 - 43961601
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataatataaaaaagaa 188  Q
    ||||||||||||||||||||||||||||||  || ||||||||| |||| | ||||||||  ||| |||||| ||||||||||    
T  43961519 ttgaagtattatatgatcatttatcatgttgataattcaattttctaaaaatcattttataatgttcataatttaaaaaagaa 43961601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 102 - 189
Target Start/End: Original strand, 16400904 - 16400992
Alignment:
Q  102 tatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaagac-attttatcgtgtccataatataaaaaagaat 189  Q
    ||||||||||||||||||||||| |||||||||||| ||| | || |||||||| || |||| || |||||| |||| |||||| ||||    
T  16400904 tatgattgaagtattatatgatcgtttatcatgttaatatgttaactttttaaaaactatttcatagtgtccctaatttaaaaacgaat 16400992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 99 - 238
Target Start/End: Original strand, 27735846 - 27735986
Alignment:
Q  99 aagtatgattgaagtattatatgatcatttatcatgttattat-ttcaattttttaaagacattttatcgtgtccataatataaaaaagaatagcaatcc 197  Q
    |||| |||||||||||||||||||||||||||||||||| |||  | | | ||| ||| ||||||||| |||||| |||| |||||| ||| |   | ||    
T  27735846 aagtgtgattgaagtattatatgatcatttatcatgttaatatgctaactctttaaaaaacattttatagtgtccgtaatttaaaaatgaaaaatgaacc 27735945  T
Q  198 ctcctctcctttcacctctcaaaccctccatccaaacacac 238  Q
    ||   |||| ||| ||||  |||||||||||||||||||||    
T  27735946 ctatcctcccttcccctcctaaaccctccatccaaacacac 27735986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 99 - 143
Target Start/End: Original strand, 37711244 - 37711288
Alignment:
Q  99 aagtatgattgaagtattatatgatcatttatcatgttattattt 143  Q
    |||| |||||||||||||||||||||||||||||||||| |||||    
T  37711244 aagtgtgattgaagtattatatgatcatttatcatgttaatattt 37711288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 99 - 155
Target Start/End: Complemental strand, 47433851 - 47433796
Alignment:
Q  99 aagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaa 155  Q
    |||| ||||||||||||||||||||| ||||| |||||||||||| |||||||||||    
T  47433851 aagtgtgattgaagtattatatgatcgtttat-atgttattattttaattttttaaa 47433796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 107 - 150
Target Start/End: Complemental strand, 7977631 - 7977588
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgttattatttcaatttt 150  Q
    |||||||||||||||||||||||||||||| ||| |||||||||    
T  7977631 ttgaagtattatatgatcatttatcatgttgttaattcaatttt 7977588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 238
Target Start/End: Original strand, 45741996 - 45742131
Alignment:
Q  104 tgattgaagtattatatgatcatttatcatgttattat-ttcaattttttaaagacattttatcgtgtccataatataaaaaagaatagcaatccctcct 202  Q
    ||||||||||||||||||||| |||||||||||| ||| || | ||||| ||| |||||| || |||||| |||| |||||| ||| || || | ||||     
T  45741996 tgattgaagtattatatgatcgtttatcatgttaatatgttaactttttaaaaaacatttcatagtgtccgtaatttaaaaatgaaaagtaaactctccc 45742095  T
Q  203 ctcctttcacctctcaaaccctccatccaaacacac 238  Q
    |||| ||  || |  ||||||| |||||||||||||    
T  45742096 ctccctttcccgcctaaacccttcatccaaacacac 45742131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 188
Target Start/End: Complemental strand, 29993906 - 29993824
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataatataaaaaagaa 188  Q
    |||||||||||||| |||||  |||||||| ||| ||||||||| |||| | |||||||| |||||| |||| ||||||||||    
T  29993906 ttgaagtattatatcatcatcaatcatgttgttaattcaattttctaaaaatcattttatagtgtccgtaatttaaaaaagaa 29993824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 46007838 - 46007788
Alignment:
Q  105 gattgaagtattatatgatcatttatcatgttattatttcaattttttaaa 155  Q
    ||||||||||||||||||||||||||||||||| ||| | || ||||||||    
T  46007838 gattgaagtattatatgatcatttatcatgttaatatgttaactttttaaa 46007788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 188
Target Start/End: Complemental strand, 47846190 - 47846108
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataatataaaaaagaa 188  Q
    ||||||||||||||||| |||||||||||| ||| ||||||||| |||| |  |||||||  |||||| ||| ||||||||||    
T  47846190 ttgaagtattatatgattatttatcatgttcttaattcaattttgtaaaaattattttataatgtccagaatttaaaaaagaa 47846108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 184
Target Start/End: Original strand, 36151677 - 36151762
Alignment:
Q  99 aagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaagacattttatcgtgtccataatataaaaa 184  Q
    |||| ||||||||||||||||||||| |||||||||||| ||| | || |||| |||  |||||| | |||| |||||| ||||||    
T  36151677 aagtgtgattgaagtattatatgatcgtttatcatgttaatatgttaacttttaaaaatcattttctagtgttcataatttaaaaa 36151762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 184
Target Start/End: Complemental strand, 45132644 - 45132559
Alignment:
Q  99 aagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaagacattttatcgtgtccataatataaaaa 184  Q
    |||| ||||||||||||||||||||| |||||||| ||| ||| | || |||||||| ||||||  | |||| |||||| ||||||    
T  45132644 aagtgtgattgaagtattatatgatcgtttatcattttaatatgttaactttttaaaaacatttcgtagtgtacataatttaaaaa 45132559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 238
Target Start/End: Original strand, 54935169 - 54935310
Alignment:
Q  99 aagtatgattgaagtatt-atatgatcatttatcatgttattatttcaattttttaaag-acattttatcgtgtccataatataaaaaagaatagcaatc 196  Q
    |||| ||||||||||||| |||||||| |||||||| ||| |||   || ||||||||  |||||| || |||||| |||| |||||| ||| |  || |    
T  54935169 aagtgtgattgaagtatttatatgatcgtttatcatattaatatgataactttttaaaatacatttcatagtgtccgtaatttaaaaatgaaaaataaac 54935268  T
Q  197 cctcctctcctttcacctctcaaaccctccatccaaacacac 238  Q
    ||||| |||| ||| ||||  |||||||||||||||||||||    
T  54935269 cctcccctcccttcccctcctaaaccctccatccaaacacac 54935310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 151
Target Start/End: Complemental strand, 17182620 - 17182576
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgttattatttcaattttt 151  Q
    ||||||||||||||||||||||||||| || ||| ||||||||||    
T  17182620 ttgaagtattatatgatcatttatcatattgttaattcaattttt 17182576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 139
Target Start/End: Original strand, 41227581 - 41227621
Alignment:
Q  99 aagtatgattgaagtattatatgatcatttatcatgttatt 139  Q
    |||| ||||||||||||||||||||||||||||| ||||||    
T  41227581 aagtgtgattgaagtattatatgatcatttatcacgttatt 41227621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 98 - 153
Target Start/End: Original strand, 5307107 - 5307162
Alignment:
Q  98 caagtatgattgaagtattatatgatcatttatcatgttattatttcaatttttta 153  Q
    ||||| |||||| |||||| |||||||||||||| || | ||||||||||||||||    
T  5307107 caagtgtgattgcagtattttatgatcatttatcgtgatgttatttcaatttttta 5307162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 106 - 137
Target Start/End: Complemental strand, 5730966 - 5730935
Alignment:
Q  106 attgaagtattatatgatcatttatcatgtta 137  Q
    ||||||||||||||||||||||||||||||||    
T  5730966 attgaagtattatatgatcatttatcatgtta 5730935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 104 - 238
Target Start/End: Original strand, 41174451 - 41174586
Alignment:
Q  104 tgattgaagtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataatataaaaaagaatagcaatccctcct 202  Q
    ||||||| ||||||||||||||||||| |||||| |||   || |||||||| | ||||| || |||||| |||  |||||| ||| |  || || |||     
T  41174451 tgattgatgtattatatgatcatttattatgttaatatgctaactttttaaaaaccatttcatagtgtccctaaattaaaaatgaaaactaaaccatccc 41174550  T
Q  203 ctcctttcacctctcaaaccctccatccaaacacac 238  Q
    |||| ||| ||||  |||||||||||||||||||||    
T  41174551 ctcccttcccctcctaaaccctccatccaaacacac 41174586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 116 - 155
Target Start/End: Original strand, 51075215 - 51075254
Alignment:
Q  116 tatatgatcatttatcatgttattatttcaattttttaaa 155  Q
    ||||||||||||||||||||| ||| ||||||||||||||    
T  51075215 tatatgatcatttatcatgttgttaattcaattttttaaa 51075254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 137
Target Start/End: Original strand, 26167038 - 26167076
Alignment:
Q  99 aagtatgattgaagtattatatgatcatttatcatgtta 137  Q
    |||| ||||||||||||||||||||| ||||||||||||    
T  26167038 aagtgtgattgaagtattatatgatcgtttatcatgtta 26167076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 137
Target Start/End: Original strand, 35248787 - 35248825
Alignment:
Q  99 aagtatgattgaagtattatatgatcatttatcatgtta 137  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  35248787 aagtgtgattgaagtattatatgattatttatcatgtta 35248825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 137
Target Start/End: Complemental strand, 54001238 - 54001208
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgtta 137  Q
    |||||||||||||||||||||||||||||||    
T  54001238 ttgaagtattatatgatcatttatcatgtta 54001208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 137
Target Start/End: Original strand, 56135858 - 56135888
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgtta 137  Q
    |||||||||||||||||||||||||||||||    
T  56135858 ttgaagtattatatgatcatttatcatgtta 56135888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 137
Target Start/End: Complemental strand, 1968497 - 1968464
Alignment:
Q  104 tgattgaagtattatatgatcatttatcatgtta 137  Q
    ||||||||||||||||||||| ||||||||||||    
T  1968497 tgattgaagtattatatgatcgtttatcatgtta 1968464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 137
Target Start/End: Complemental strand, 2917101 - 2917068
Alignment:
Q  104 tgattgaagtattatatgatcatttatcatgtta 137  Q
    ||||||||||||||||||||| ||||||||||||    
T  2917101 tgattgaagtattatatgatcgtttatcatgtta 2917068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 165
Target Start/End: Original strand, 8347302 - 8347367
Alignment:
Q  100 agtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaagacattttat 165  Q
    |||||||||||  |||||||||||||||||||||| | || ||||||  ||||||| | |||||||    
T  8347302 agtatgattgatatattatatgatcatttatcatgctgttgtttcaacgttttaaaaatattttat 8347367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 136
Target Start/End: Original strand, 47694458 - 47694487
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgtt 136  Q
    ||||||||||||||||||||||||||||||    
T  47694458 ttgaagtattatatgatcatttatcatgtt 47694487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 238
Target Start/End: Complemental strand, 49735612 - 49735471
Alignment:
Q  98 caagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaa-gacattttatcgtgtccataatataaaaaagaatagcaatc 196  Q
    ||||| |||| ||| |||||||| ||| |||||||||||| ||  | || |||||||| ||||||| ||  ||||| |||| |||||| ||| ||  | |    
T  49735612 caagtgtgatagaaatattatattatcgtttatcatgttaataggttaactttttaaaagacatttcatgttgtccgtaatttaaaaatgaaaagtgaac 49735513  T
Q  197 cctcctctcctttcacctctcaaaccctccatccaaacacac 238  Q
    ||||| |||| ||| ||||  |||||||| ||||||||||||    
T  49735512 cctcccctcccttcccctcctaaaccctcaatccaaacacac 49735471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 155
Target Start/End: Original strand, 5825013 - 5825053
Alignment:
Q  115 ttatatgatcatttatcatgttattatttcaattttttaaa 155  Q
    |||||||||||||||||||||| ||| ||||||||| ||||    
T  5825013 ttatatgatcatttatcatgttgttaattcaattttctaaa 5825053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 155
Target Start/End: Original strand, 11089625 - 11089673
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaa 155  Q
    |||||||| ||||||||||||||| ||||| ||| ||||||||| ||||    
T  11089625 ttgaagtaatatatgatcatttatgatgttgttaattcaattttctaaa 11089673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 139
Target Start/End: Original strand, 22921083 - 22921123
Alignment:
Q  99 aagtatgattgaagtattatatgatcatttatcatgttatt 139  Q
    |||| ||||||||||||||||||||| |||||||| |||||    
T  22921083 aagtgtgattgaagtattatatgatcgtttatcatattatt 22921123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 139
Target Start/End: Complemental strand, 22970716 - 22970676
Alignment:
Q  99 aagtatgattgaagtattatatgatcatttatcatgttatt 139  Q
    |||| ||||||||||||||||||||| |||||||| |||||    
T  22970716 aagtgtgattgaagtattatatgatcgtttatcatattatt 22970676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 155
Target Start/End: Complemental strand, 34108369 - 34108314
Alignment:
Q  99 aagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaa 155  Q
    |||||||||||||||||||||  || ||||||||||||| ||||| | |||||||||    
T  34108369 aagtatgattgaagtattatacaataatttatcatgtta-tattttacttttttaaa 34108314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 238
Target Start/End: Original strand, 54320535 - 54320675
Alignment:
Q  99 aagtatgattgaagtattatatgatcatttatcatgttattat-ttcaattttttaaagacattttatcgtgtccataatataaaaaagaatagcaatcc 197  Q
    |||| |||||| |||||||||||||  |||||||||||| |||  | | ||||| ||| || ||| || |||||| |||| ||||||  || | ||| ||    
T  54320535 aagtgtgattggagtattatatgattgtttatcatgttaatatgctaactttttaaaaaacgtttcatagtgtccgtaatttaaaaattaaaatcaaacc 54320634  T
Q  198 ctcctctcctttcacctctcaaaccctccatccaaacacac 238  Q
    |||| |||| ||| ||||  |||||||| ||||||||||||    
T  54320635 ctcccctcccttcccctcctaaaccctcaatccaaacacac 54320675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 155
Target Start/End: Original strand, 55080688 - 55080736
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaa 155  Q
    |||||||||| ||||||||||||||||||| ||| || |||||| ||||    
T  55080688 ttgaagtattttatgatcatttatcatgttgttaattaaattttctaaa 55080736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 99 - 238
Target Start/End: Complemental strand, 31795912 - 31795772
Alignment:
Q  99 aagtatgattgaagtattatatgatcatttatcatgttattatttcaattttt-taaagacattttatcgtgtccataatataaaaaagaatagcaatcc 197  Q
    |||| ||||||||||||||||||||| ||||||||||| |||||| | |||||  ||| || ||| || |||||| |||| |||||| ||| || ||  |    
T  31795912 aagtgtgattgaagtattatatgatcgtttatcatgttgttattttattttttaaaaaaacttttcatagtgtccgtaatttaaaaacgaaaagtaagtc 31795813  T
Q  198 ctcctctcctttcacctctcaaaccctccatccaaacacac 238  Q
    |||| |||| ||||||||  |||||||||||||||||||||    
T  31795812 ctcccctcccttcacctcataaaccctccatccaaacacac 31795772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 98 - 238
Target Start/End: Original strand, 23748195 - 23748336
Alignment:
Q  98 caagtatgattgaagtattatatgatcatttatcatgttattat-ttcaattttttaaagacattttatcgtgtccataatataaaaaagaatagcaatc 196  Q
    ||||| ||||||||||||||||| ||| |||||||||||| ||| || | ||||| |||||||||| || |||||| || | |||||| ||| ||  | |    
T  23748195 caagtgtgattgaagtattatattatcgtttatcatgttaatatgttaactttttaaaagacatttcatagtgtccgtagtttaaaaatgaaaagtgaac 23748294  T
Q  197 cctcctctcctttcacctctcaaaccctccatccaaacacac 238  Q
    ||||| |||| ||| ||||  |||||||||||||||||||||    
T  23748295 cctcccctcccttcccctcctaaaccctccatccaaacacac 23748336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 107 - 155
Target Start/End: Original strand, 35325378 - 35325426
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaa 155  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  35325378 ttgaagtattatatgatcatttatcatgttattaattcaattttttaaa 35325426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 98 - 238
Target Start/End: Original strand, 9631660 - 9631801
Alignment:
Q  98 caagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaa-gacattttatcgtgtccataatataaaaaagaatagcaatc 196  Q
    ||||| ||| ||||||||||||| ||| |||||||||||| ||| | || |||||||| ||||||| || |||||| |||| |||||| ||| ||  | |    
T  9631660 caagtgtgaatgaagtattatattatcgtttatcatgttaatatgttaactttttaaaggacatttcatggtgtccgtaatttaaaaacgaaaagttaac 9631759  T
Q  197 cctcctctcctttcacctctcaaaccctccatccaaacacac 238  Q
    |||| ||||| ||  ||||  |||||||||||||||||||||    
T  9631760 cctcttctccctttccctcctaaaccctccatccaaacacac 9631801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 107 - 150
Target Start/End: Complemental strand, 31928179 - 31928136
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgttattatttcaatttt 150  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  31928179 ttgaagtattatatgatcatttatcatgttattaattcaatttt 31928136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 104 - 238
Target Start/End: Complemental strand, 36046342 - 36046207
Alignment:
Q  104 tgattgaagtattatatgatcatttatcatgttattat-ttcaattttttaaagacattttatcgtgtccataatataaaaaagaatagcaatccctcct 202  Q
    ||||||||||||||| |||||||||| ||||||| ||| || | ||||| ||| ||||||| | |||||| |||| |||||| ||| |  || | ||||     
T  36046342 tgattgaagtattatgtgatcatttaacatgttaatatgttaactttttaaaaaacattttctagtgtccgtaatttaaaaatgaaaaataaactctccc 36046243  T
Q  203 ctcctttcacctctcaaaccctccatccaaacacac 238  Q
    ||| |||| ||||  |||||||||||||||||||||    
T  36046242 ctcatttcccctcctaaaccctccatccaaacacac 36046207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 102 - 238
Target Start/End: Original strand, 35736295 - 35736428
Alignment:
Q  102 tatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaagacattttatcgtgtccataatataaaaaagaatagcaatccctcc 201  Q
    |||||| |||||||||||||||| |||||||||||||| | |   ||||| ||| || ||| || ||||||  ||| |||||| ||| ||  | ||||||    
T  35736295 tatgatcgaagtattatatgatcgtttatcatgttattttat---tttttaaaaaacttttcatagtgtccgaaatttaaaaacgaaaagtgagccctcc 35736391  T
Q  202 tctcctttcacctctcaaaccctccatccaaacacac 238  Q
     |||| ||||||||  |||||||||||||||||||||    
T  35736392 cctcccttcacctcctaaaccctccatccaaacacac 35736428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 149
Target Start/End: Original strand, 20545815 - 20545860
Alignment:
Q  104 tgattgaagtattatatgatcatttatcatgttattatttcaattt 149  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||    
T  20545815 tgattgaagtattatatgattatttctcatgttattatttcaattt 20545860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 107 - 151
Target Start/End: Original strand, 45098278 - 45098322
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgttattatttcaattttt 151  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||    
T  45098278 ttgaagtattatatgatcatttatcatgttgttaattcaattttt 45098322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 239
Target Start/End: Complemental strand, 15085835 - 15085701
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataa-tataaaaaagaatagcaatccctcctct 204  Q
    |||||||||||||||||||||||||| ||| ||| ||||||||| |||| | ||||||||  ||||| ||| | ||||||| || || || | |||||||    
T  15085835 ttgaagtattatatgatcatttatcaagttgttaattcaattttctaaaaatcattttataatgtccgtaattttaaaaaaaaaaagtaagctctcctct 15085736  T
Q  205 cctttcacctctcaaaccctccatccaaacacaca 239  Q
    || |||  |||| ||||  | ||||||||||||||    
T  15085735 cccttcttctcttaaacttttcatccaaacacaca 15085701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 137
Target Start/End: Complemental strand, 15224837 - 15224799
Alignment:
Q  99 aagtatgattgaagtattatatgatcatttatcatgtta 137  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  15224837 aagtgtgattgaagtattatatgatcatttatcatgtta 15224799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 137
Target Start/End: Complemental strand, 39732872 - 39732834
Alignment:
Q  99 aagtatgattgaagtattatatgatcatttatcatgtta 137  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  39732872 aagtatgattgaagtattatatgatcgtttatcatgtta 39732834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 137
Target Start/End: Complemental strand, 36566989 - 36566956
Alignment:
Q  104 tgattgaagtattatatgatcatttatcatgtta 137  Q
    ||||||||||||||||||||||||||||||||||    
T  36566989 tgattgaagtattatatgatcatttatcatgtta 36566956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 137
Target Start/End: Complemental strand, 8427008 - 8426976
Alignment:
Q  105 gattgaagtattatatgatcatttatcatgtta 137  Q
    |||||||||||||||||||||||||||||||||    
T  8427008 gattgaagtattatatgatcatttatcatgtta 8426976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 238
Target Start/End: Original strand, 45257416 - 45257548
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataatataaaaaagaatagcaatccctcctctc 205  Q
    ||||||||||||||||||||||||||| || ||| |||||||||  ||| | ||||||||  | ||| |||| |||||||||| || || || ||  |||    
T  45257416 ttgaagtattatatgatcatttatcatattgttaattcaattttcaaaaaatcattttataatatccgtaatttaaaaaagaaaagtaaaccatctcctc 45257515  T
Q  206 ctttcacctctcaaaccctccatccaaacacac 238  Q
    | ||| | ||  ||| |||||||||||||||||    
T  45257516 ccttcccatcctaaaacctccatccaaacacac 45257548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 150
Target Start/End: Complemental strand, 3094488 - 3094445
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgttattatttcaatttt 150  Q
    ||||||||||||||||| |||||||||||| ||| |||||||||    
T  3094488 ttgaagtattatatgattatttatcatgttgttaattcaatttt 3094445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 99 - 201
Target Start/End: Original strand, 12751916 - 12752019
Alignment:
Q  99 aagtatgattgaagtattatatgatcatttatcatgttattatttcaattttt-taaagacattttatcgtgtccataatataaaaaagaatagcaatcc 197  Q
    |||| ||||||||||||||||||||| ||||| || ||||||| | |||||||  ||| | |||| || ||||||||||| | |||| ||| ||||| ||    
T  12751916 aagtgtgattgaagtattatatgatcgtttattatattattatattaatttttaaaaaaatatttcatagtgtccataattttaaaacgaaaagcaaacc 12752015  T
Q  198 ctcc 201  Q
    ||||    
T  12752016 ctcc 12752019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 150
Target Start/End: Original strand, 31061468 - 31061511
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgttattatttcaatttt 150  Q
    ||||| |||||||||||||||||||||||| ||| |||||||||    
T  31061468 ttgaaatattatatgatcatttatcatgttgttaattcaatttt 31061511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 150
Target Start/End: Original strand, 33265715 - 33265758
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgttattatttcaatttt 150  Q
    ||||||||||||||||||||||||||| || ||| |||||||||    
T  33265715 ttgaagtattatatgatcatttatcatattgttaattcaatttt 33265758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 137
Target Start/End: Complemental strand, 37740034 - 37739996
Alignment:
Q  99 aagtatgattgaagtattatatgatcatttatcatgtta 137  Q
    |||| ||||||||||||||||||||| ||||||||||||    
T  37740034 aagtgtgattgaagtattatatgatcgtttatcatgtta 37739996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 137
Target Start/End: Complemental strand, 42316907 - 42316869
Alignment:
Q  99 aagtatgattgaagtattatatgatcatttatcatgtta 137  Q
    |||| ||||||||||||||||||||| ||||||||||||    
T  42316907 aagtgtgattgaagtattatatgatcgtttatcatgtta 42316869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 133
Target Start/End: Original strand, 887022 - 887051
Alignment:
Q  104 tgattgaagtattatatgatcatttatcat 133  Q
    ||||||||||||||||||||||||||||||    
T  887022 tgattgaagtattatatgatcatttatcat 887051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 148
Target Start/End: Original strand, 15915832 - 15915881
Alignment:
Q  99 aagtatgattgaagtattatatgatcatttatcatgttattatttcaatt 148  Q
    |||||||||| || ||||||||| ||||||||||| ||||| ||||||||    
T  15915832 aagtatgattcaaatattatatggtcatttatcatattattctttcaatt 15915881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 152
Target Start/End: Original strand, 41778874 - 41778927
Alignment:
Q  99 aagtatgattgaagtattatatgatcatttatcatgttattatttcaatttttt 152  Q
    |||| |||||||||||||||||||||||||||| | |  || ||||||||||||    
T  41778874 aagtgtgattgaagtattatatgatcatttatcgtttcgttgtttcaatttttt 41778927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 238
Target Start/End: Original strand, 42813732 - 42813861
Alignment:
Q  110 aagtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataatataaaaaagaatagcaatccctcctctcctt 208  Q
    |||||||||||||| |||||||| ||| ||| ||||||||| |||| | ||||||||  ||| | |||| |||||||||| |  || || ||| |||  |    
T  42813732 aagtattatatgattatttatcaggttgttaattcaattttctaaaaatcattttataatgttcgtaatttaaaaaagaaaaataagccatcccctctct 42813831  T
Q  209 tcacctctcaaaccctccatccaaacacac 238  Q
    || ||||  ||||||| |||||||||||||    
T  42813832 tcccctcctaaacccttcatccaaacacac 42813861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 136
Target Start/End: Original strand, 887222 - 887254
Alignment:
Q  104 tgattgaagtattatatgatcatttatcatgtt 136  Q
    ||||||||||||||||||||| |||||||||||    
T  887222 tgattgaagtattatatgatcgtttatcatgtt 887254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 155
Target Start/End: Complemental strand, 1052890 - 1052842
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaa 155  Q
    ||||| ||||||| |||||||||||||||| ||| ||||||||| ||||    
T  1052890 ttgaaatattatacgatcatttatcatgttgttaattcaattttctaaa 1052842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 152
Target Start/End: Complemental strand, 39354312 - 39354264
Alignment:
Q  104 tgattgaagtattatatgatcatttatcatgttattatttcaatttttt 152  Q
    |||||||||||||| ||||||  |||| |||||||||||| ||||||||    
T  39354312 tgattgaagtattacatgatcgattattatgttattattttaatttttt 39354264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 107 - 237
Target Start/End: Original strand, 184716 - 184847
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataatataaaaaagaatagcaatccctcctctc 205  Q
    ||||||||||||||||| || ||||||||| ||| |||||||||  ||| | ||||||||  |||||||||| ||||||||||||| || ||||||  ||    
T  184716 ttgaagtattatatgataatatatcatgttgttaattcaattttaaaaaaatcattttataatgtccataatttaaaaaagaatagtaaaccctcccttc 184815  T
Q  206 ctttcacctctcaaaccctccatccaaacaca 237  Q
    | ||  ||||  ||||||||||||||||||||    
T  184816 cctttccctcctaaaccctccatccaaacaca 184847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 7e-18; HSPs: 34)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 106 - 207
Target Start/End: Complemental strand, 13839864 - 13839762
Alignment:
Q  106 attgaagtattatatgatcatttatcatgttattatttcaa-ttttttaaagacattttatcgtgtccataatataaaaaagaatagcaatccctcctct 204  Q
    ||||||||||||||||||  | ||||||||||||||||||| ||||  ||| ||||||||| ||||||||||| |||||||||| || || | |||||||    
T  13839864 attgaagtattatatgattgtctatcatgttattatttcaacttttcaaaatacattttatagtgtccataatttaaaaaagaaaagtaagctctcctct 13839765  T
Q  205 cct 207  Q
    |||    
T  13839764 cct 13839762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 107 - 238
Target Start/End: Complemental strand, 33744328 - 33744196
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataatataaaaaagaatagcaatccctcctctc 205  Q
    |||||| | ||||||||||||||||||||| ||| |||||||||  ||| | ||||||||  |||||||||| |||||||||| || || |||||| |||    
T  33744328 ttgaagaaatatatgatcatttatcatgttgttaattcaattttcaaaaaatcattttataatgtccataatttaaaaaagaaaagtaaaccctcccctc 33744229  T
Q  206 ctttcacctctcaaaccctccatccaaacacac 238  Q
    | ||| || |   ||||||||||||||||||||    
T  33744228 ccttctccgccttaaccctccatccaaacacac 33744196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 107 - 238
Target Start/End: Original strand, 34980919 - 34981051
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataatataaaaaagaatagcaatccctcctctc 205  Q
    |||||||||||||| ||||||||||||||| |||  |||||||| || | | ||||||||  |||||||||| |||||||||| || ||  ||||| |||    
T  34980919 ttgaagtattatataatcatttatcatgttgttaactcaattttctataaatcattttataatgtccataatttaaaaaagaaaagtaagtcctcccctc 34981018  T
Q  206 ctttcacctctcaaaccctccatccaaacacac 238  Q
    | ||| ||||| |||||||||||  ||||||||    
T  34981019 ccttcccctcttaaaccctccattaaaacacac 34981051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 104 - 155
Target Start/End: Original strand, 42681559 - 42681610
Alignment:
Q  104 tgattgaagtattatatgatcatttatcatgttattatttcaattttttaaa 155  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  42681559 tgattaaagtattatatgatcatttatcatgttattattttaattttttaaa 42681610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 99 - 238
Target Start/End: Complemental strand, 28279619 - 28279479
Alignment:
Q  99 aagtatgattgaagtattatatgatcatttatcatgttattat-ttcaattttttaaagacattttatcgtgtccataatataaaaaagaatagcaatcc 197  Q
    |||| |||||||||||||||||||||||||||||||||| ||| || | ||||| ||| |||||| ||  |||||||||| |||||| ||| || ||       
T  28279619 aagtgtgattgaagtattatatgatcatttatcatgttaatatgttaactttttaaaaaacatttcataatgtccataatttaaaaatgaaaagtaaatt 28279520  T
Q  198 ctcctctcctttcacctctcaaaccctccatccaaacacac 238  Q
     ||  | |||||| | || ||||||||||||||||||||||    
T  28279519 ttcaccccctttcccatcccaaaccctccatccaaacacac 28279479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 104 - 238
Target Start/End: Original strand, 13634817 - 13634952
Alignment:
Q  104 tgattgaagtattatatgatcatttatcatgttattat-ttcaattttttaaagacattttatcgtgtccataatataaaaaagaatagcaatccctcct 202  Q
    |||||||| |||||||||||| |||||||||||| ||| || | ||||| ||| |||||| || |||| | |||| |||||| ||| || || ||||||     
T  13634817 tgattgaattattatatgatcgtttatcatgttaatatgttaactttttaaaaaacatttcatagtgttcgtaatttaaaaatgaaaagtaacccctccc 13634916  T
Q  203 ctcctttcacctctcaaaccctccatccaaacacac 238  Q
    |||| ||| ||||  |||||||| ||||||||||||    
T  13634917 ctcccttcccctcctaaaccctcaatccaaacacac 13634952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 238
Target Start/End: Original strand, 7544236 - 7544377
Alignment:
Q  98 caagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataatataaaaaagaatagcaatc 196  Q
    ||||| ||||||||||||||||||||  ||||| |||||| |||   || |||||||| | ||||| || |||||| |||| |||||| ||| | ||| |    
T  7544236 caagtgtgattgaagtattatatgattgtttattatgttaatatgctaactttttaaaaaacatttcatagtgtccgtaatttaaaaatgaaaaccaaac 7544335  T
Q  197 cctcctctcctttcacctctcaaaccctccatccaaacacac 238  Q
    ||||| || | ||| ||||  |||||||||||||||||||||    
T  7544336 cctccccttccttcccctcctaaaccctccatccaaacacac 7544377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 99 - 155
Target Start/End: Complemental strand, 10072790 - 10072734
Alignment:
Q  99 aagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaa 155  Q
    |||||||||||||||||||||||||| |||||||||||| ||| | || ||||||||    
T  10072790 aagtatgattgaagtattatatgatcgtttatcatgttaatatgttaactttttaaa 10072734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 147 - 238
Target Start/End: Original strand, 1657963 - 1658054
Alignment:
Q  147 ttttttaaagacattttatcgtgtccataatataaaaaagaatagcaatccctcctctcctttcacctctcaaaccctccatccaaacacac 238  Q
    ||||| ||| ||||||||| |||||| |||| |||||| ||| || || |||||| |||| ||| ||||  |||||||||||||||||||||    
T  1657963 tttttaaaaaacattttatagtgtccgtaatttaaaaatgaaaagtaaaccctcccctcccttcccctcctaaaccctccatccaaacacac 1658054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 149
Target Start/End: Complemental strand, 2556144 - 2556110
Alignment:
Q  115 ttatatgatcatttatcatgttattatttcaattt 149  Q
    |||||||||||||||||||||||||||||||||||    
T  2556144 ttatatgatcatttatcatgttattatttcaattt 2556110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 150
Target Start/End: Complemental strand, 6597920 - 6597882
Alignment:
Q  112 gtattatatgatcatttatcatgttattatttcaatttt 150  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  6597920 gtattatatgatcatttatcatgttgttatttcaatttt 6597882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 152
Target Start/End: Original strand, 18855708 - 18855761
Alignment:
Q  99 aagtatgattgaagtattatatgatcatttatcatgttattatttcaatttttt 152  Q
    |||| ||||| ||||||||||||||||||||||||||| || |||||| |||||    
T  18855708 aagtttgatttaagtattatatgatcatttatcatgttgttctttcaaattttt 18855761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 238
Target Start/End: Original strand, 26414994 - 26415135
Alignment:
Q  99 aagtatgattgaagtattatatgatcatttatcatgttattatttcaatttttta-aagacattttatcgtgtccataatataaaaaagaatagcaatcc 197  Q
    |||| |||||||||||||||||| || |||||||||||| ||| | || |||||| || |||||| || |||||  |||  |||||| ||| || || |     
T  26414994 aagtgtgattgaagtattatatggtcgtttatcatgttaatatgttaactttttataaaacatttcatagtgtctgtaacttaaaaatgaaaagtaaact 26415093  T
Q  198 ctcctctccttt-cacctctcaaaccctccatccaaacacac 238  Q
    |||| ||||||| | ||||  |||||||||||||||||||||    
T  26415094 ctcccctcctttccccctcataaaccctccatccaaacacac 26415135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 149
Target Start/End: Complemental strand, 33424940 - 33424895
Alignment:
Q  104 tgattgaagtattatatgatcatttatcatgttattatttcaattt 149  Q
    ||||| ||||||||||||||||||||||||  ||||||||||||||    
T  33424940 tgattaaagtattatatgatcatttatcattctattatttcaattt 33424895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 238
Target Start/End: Original strand, 2183943 - 2184055
Alignment:
Q  127 ttatcatgttattatttcaattttttaaa-gacattttatcgtgtccataatataaaaaagaatagcaatccctcctctcctttcacctctcaaaccctc 225  Q
    |||||||||| ||||||||||||||||||  |||||||||  ||||| |||| |||| | ||| |  || ||||| |||   ||| ||||| ||||||||    
T  2183943 ttatcatgttgttatttcaattttttaaataacattttataatgtccgtaatttaaagaggaaaaataagccctcttctatcttcccctcttaaaccctc 2184042  T
Q  226 catccaaacacac 238  Q
    |||||||||||||    
T  2184043 catccaaacacac 2184055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 10043141 - 10043101
Alignment:
Q  110 aagtattatatgatcatttatcatgttattatttcaatttt 150  Q
    ||||||||||||||||||||||||||| ||| |||||||||    
T  10043141 aagtattatatgatcatttatcatgttgttaattcaatttt 10043101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 155
Target Start/End: Original strand, 10204685 - 10204733
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaa 155  Q
    |||||||||||||||||||||||| | ||| ||| ||||||||||||||    
T  10204685 ttgaagtattatatgatcatttattacgttgttaattcaattttttaaa 10204733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 238
Target Start/End: Original strand, 37551513 - 37551646
Alignment:
Q  104 tgattgaagtattatatgatcatttatcatgttattatttcaatttttta-aagacattttatcgtgtccataatataaaaaagaatagcaatccctcct 202  Q
    ||||||||||||||||||||| |||||||||||| ||| | || |||||| || |||||| |  |||||  || | |||||| ||| || || || ||||    
T  37551513 tgattgaagtattatatgatcgtttatcatgttaatatgttaactttttataaaacatttca--gtgtctgtagtttaaaaatgaaaagtaaaccatcct 37551610  T
Q  203 ctcctttcacctctcaaaccctccatccaaacacac 238  Q
    |||| ||  ||||  |||||||||||||||||||||    
T  37551611 ctccctttccctcgtaaaccctccatccaaacacac 37551646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 238
Target Start/End: Original strand, 37654343 - 37654476
Alignment:
Q  104 tgattgaagtattatatgatcatttatcatgttattatttcaatttttta-aagacattttatcgtgtccataatataaaaaagaatagcaatccctcct 202  Q
    ||||||||||||||||||||| |||||||||||| ||| | || |||||| || |||||| |  |||||  || | |||||| ||| || || || ||||    
T  37654343 tgattgaagtattatatgatcgtttatcatgttaatatgttaactttttataaaacatttca--gtgtctgtagtttaaaaatgaaaagtaaaccatcct 37654440  T
Q  203 ctcctttcacctctcaaaccctccatccaaacacac 238  Q
    |||| ||  ||||  |||||||||||||||||||||    
T  37654441 ctccctttccctcgtaaaccctccatccaaacacac 37654476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 104 - 238
Target Start/End: Original strand, 37607000 - 37607135
Alignment:
Q  104 tgattgaagtattatatgatcatttatcatgttattatttcaatttttta-aagacattttatcgtgtccataatataaaaaagaatagcaatccctcct 202  Q
    ||||||||||||||||||||| |||||||||||| ||| | || |||||| || |||||| || || ||  || | |||||| ||| || || || || |    
T  37607000 tgattgaagtattatatgatcgtttatcatgttaatatgttaactttttataaaacatttcatagtatctgtattttaaaaatgaaaagtaaaccatcat 37607099  T
Q  203 ctcctttcacctctcaaaccctccatccaaacacac 238  Q
    |||| ||  ||||  |||||||||||||||||||||    
T  37607100 ctccctttccctcgtaaaccctccatccaaacacac 37607135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 104 - 238
Target Start/End: Original strand, 37779209 - 37779344
Alignment:
Q  104 tgattgaagtattatatgatcatttatcatgttattatttcaatttttta-aagacattttatcgtgtccataatataaaaaagaatagcaatccctcct 202  Q
    ||||||||||||||||||||| |||||||||||| ||| | || |||||| || |||||| || || ||  || | |||||| ||| || || || || |    
T  37779209 tgattgaagtattatatgatcgtttatcatgttaatatgttaactttttataaaacatttcatagtatctgtagtttaaaaatgaaaagtaaaccatcat 37779308  T
Q  203 ctcctttcacctctcaaaccctccatccaaacacac 238  Q
    |||| ||  ||||  |||||||||||||||||||||    
T  37779309 ctccctttccctcgtaaaccctccatccaaacacac 37779344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 137
Target Start/End: Complemental strand, 4373709 - 4373671
Alignment:
Q  99 aagtatgattgaagtattatatgatcatttatcatgtta 137  Q
    |||| |||||||| |||||||||||||||||||||||||    
T  4373709 aagtgtgattgaaatattatatgatcatttatcatgtta 4373671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 137
Target Start/End: Original strand, 16938580 - 16938618
Alignment:
Q  99 aagtatgattgaagtattatatgatcatttatcatgtta 137  Q
    |||| |||||||| |||||||||||||||||||||||||    
T  16938580 aagtgtgattgaaatattatatgatcatttatcatgtta 16938618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 137
Target Start/End: Complemental strand, 36392293 - 36392255
Alignment:
Q  99 aagtatgattgaagtattatatgatcatttatcatgtta 137  Q
    |||| ||||||||||||||||||||| ||||||||||||    
T  36392293 aagtgtgattgaagtattatatgatcgtttatcatgtta 36392255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 155
Target Start/End: Complemental strand, 8551550 - 8551505
Alignment:
Q  110 aagtattatatgatcatttatcatgttattatttcaattttttaaa 155  Q
    ||||||||||||||||||||| ||||| ||| || |||||||||||    
T  8551550 aagtattatatgatcatttataatgttgttaatttaattttttaaa 8551505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 155
Target Start/End: Original strand, 9856980 - 9857037
Alignment:
Q  98 caagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaa 155  Q
    ||||| ||||||||||||||||||||| ||||| |||||| ||| | || ||||||||    
T  9856980 caagtgtgattgaagtattatatgatcgtttattatgttaatatgttaactttttaaa 9857037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 188
Target Start/End: Original strand, 11437045 - 11437130
Alignment:
Q  104 tgattgaagtattatatgatcatttatcatgttattatttcaatttttt-aaagacattttatcgtgtccataatataaaaaagaa 188  Q
    |||||||||||||||| |||||||||||  | | |||||| |||||||| ||| ||||||||| |||| | || | ||||||||||    
T  11437045 tgattgaagtattatacgatcatttatcgcgctgttattttaattttttaaaaaacattttatagtgttcctattttaaaaaagaa 11437130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 136
Target Start/End: Original strand, 1977638 - 1977670
Alignment:
Q  104 tgattgaagtattatatgatcatttatcatgtt 136  Q
    ||||||||||||||||||||| |||||||||||    
T  1977638 tgattgaagtattatatgatcctttatcatgtt 1977670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 155
Target Start/End: Original strand, 10043361 - 10043409
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaa 155  Q
    ||||||||||||||||| |||||| ||||| ||| ||||||||| ||||    
T  10043361 ttgaagtattatatgattatttataatgttgttaattcaattttctaaa 10043409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 155
Target Start/End: Original strand, 21581056 - 21581104
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaa 155  Q
    ||||||||| |||||| ||||||||||||| ||| ||||||||| ||||    
T  21581056 ttgaagtatcatatgaacatttatcatgttgttaattcaattttctaaa 21581104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 155
Target Start/End: Original strand, 26155792 - 26155844
Alignment:
Q  103 atgattgaagtattatatgatcatttatcatgttattatttcaattttttaaa 155  Q
    ||||||||| | |||||||||||| ||||||| ||||  ||||||||||||||    
T  26155792 atgattgaattgttatatgatcatgtatcatgatattcattcaattttttaaa 26155844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 156
Target Start/End: Complemental strand, 35133076 - 35133025
Alignment:
Q  104 tgattgaagtattatatgatcatttatcatgttattatttcaattttttaaag 156  Q
    |||||||||||||||||||| | || |||||||||| ||| ||||||||||||    
T  35133076 tgattgaagtattatatgataactt-tcatgttattctttgaattttttaaag 35133025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 152
Target Start/End: Original strand, 35244019 - 35244067
Alignment:
Q  104 tgattgaagtattatatgatcatttatcatgttattatttcaatttttt 152  Q
    |||||||  |||||||| ||||||||||||||| |||||||||| ||||    
T  35244019 tgattgagatattatataatcatttatcatgtttttatttcaatatttt 35244067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 155
Target Start/End: Complemental strand, 40305800 - 40305752
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaa 155  Q
    |||||||| |||||||||||||||||| || ||| ||||||||| ||||    
T  40305800 ttgaagtactatatgatcatttatcatattgttaattcaattttctaaa 40305752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 109 - 238
Target Start/End: Complemental strand, 39320 - 39189
Alignment:
Q  109 gaagtattatatgatcatttatcatgttattat-ttcaattttttaaagacattttatcgtgtccataatataaaaaagaatagcaatccct-cctctcc 206  Q
    ||||||||||||||||||||||||||||| ||| || | ||||| ||| |||||| || |||||| |||| |||||| ||| || || |||| || |||     
T  39320 gaagtattatatgatcatttatcatgttaatatgttaactttttaaaaaacatttcatagtgtccgtaatttaaaaatgaaaagtaaaccctccccctca 39221  T
Q  207 tttcacctctcaaaccctccatccaaacacac 238  Q
    |||| ||||  |||||||||||||||||||||    
T  39220 tttcccctcctaaaccctccatccaaacacac 39189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 107 - 237
Target Start/End: Original strand, 242325 - 242456
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataatataaaaaagaatagcaatccctcctctc 205  Q
    ||||| |||||||| ||||||||||||||  ||| |||||||||||||| | ||||||||  ||||| |||| |||||||||| || || |||||| |||    
T  242325 ttgaattattatatcatcatttatcatgtcgttaattcaattttttaaaaatcattttataatgtccgtaatttaaaaaagaaaagtaaaccctcccctc 242424  T
Q  206 ctttcacctctcaaaccctccatccaaacaca 237  Q
    | ||| |||   ||||| ||||||||||||||    
T  242425 ccttccccttataaaccatccatccaaacaca 242456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 104 - 238
Target Start/End: Original strand, 10818322 - 10818457
Alignment:
Q  104 tgattgaagtattatatgatcatttatcatgttattatttcaat-tttttaaagacattttatcgtgtccataatataaaaaagaatagcaatccctcct 202  Q
    |||||||||||||||||||||||||||||||||| ||| | ||| |||| ||| |||||| || |||||| |||| |||||| ||| || || ||||||     
T  10818322 tgattgaagtattatatgatcatttatcatgttaatatgttaatattttaaaaaacatttcatagtgtccgtaatttaaaaatgaaaagtaaaccctccc 10818421  T
Q  203 ctcctttcacctctcaaaccctccatccaaacacac 238  Q
    |||| | | ||||  |||| ||| ||||||||||||    
T  10818422 ctccctacccctcctaaactctcaatccaaacacac 10818457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 107 - 154
Target Start/End: Complemental strand, 5526879 - 5526832
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgttattatttcaattttttaa 154  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||||    
T  5526879 ttgaattattatatgatcatttatcatgttattatttcaaatttttaa 5526832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 104 - 154
Target Start/End: Complemental strand, 23924994 - 23924944
Alignment:
Q  104 tgattgaagtattatatgatcatttatcatgttattatttcaattttttaa 154  Q
    ||||||||||||||||| |||||||||||||| |||||||||||| |||||    
T  23924994 tgattgaagtattatataatcatttatcatgtaattatttcaattatttaa 23924944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 100 - 150
Target Start/End: Complemental strand, 30850054 - 30850004
Alignment:
Q  100 agtatgattgaagtattatatgatcatttatcatgttattatttcaatttt 150  Q
    ||||| ||||||||||||||||||| |||||||||||||||||| ||||||    
T  30850054 agtataattgaagtattatatgatcgtttatcatgttattattttaatttt 30850004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 104 - 238
Target Start/End: Original strand, 33236057 - 33236191
Alignment:
Q  104 tgattgaagtattatatgatcatttatcatgttattatttcaattttttaaagacattttatcgtgtccataatataaaaaagaatagcaatccctcctc 203  Q
    ||||||||| ||||||||||  |||||||||||| ||| | || |||||||| | |||| || |||||| |||| |||||| ||| || |||| |||| |    
T  33236057 tgattgaagaattatatgattgtttatcatgttaatatgttaactttttaaaaaaatttcatagtgtccgtaatttaaaaatgaaaagtaatctctcccc 33236156  T
Q  204 tcctttcacctctcaaaccctccatccaaacacac 238  Q
    |||||||  |||  |||| ||||||||||| ||||    
T  33236157 tcctttcctctcataaactctccatccaaatacac 33236191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 107 - 239
Target Start/End: Original strand, 26318414 - 26318547
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgttattatttcaatttt-ttaaagacattttatcgtgtccataatataaaaaagaatagcaatccctcctctc 205  Q
    ||||||||||||||||||| |||||||||| ||| ||||||||| | |||| ||||||||    |||||||| |||||||||| || ||  | ||| |||    
T  26318414 ttgaagtattatatgatcaattatcatgttgttaattcaattttctaaaagtcattttataaaatccataatttaaaaaagaaaagtaaatcttcccctc 26318513  T
Q  206 ctttcacctctcaaaccctccatccaaacacaca 239  Q
    | ||  ||||  |||| |||||||||||||||||    
T  26318514 cctttccctcctaaactctccatccaaacacaca 26318547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 99 - 238
Target Start/End: Original strand, 1300721 - 1300861
Alignment:
Q  99 aagtatgattgaagtattatatgatcatttatcatgttattatttcaatttttta-aagacattttatcgtgtccataatataaaaaagaatagcaatcc 197  Q
    |||| ||||||||||||||||||||  ||||||| |||| ||| | || |||||| || | |||| ||  ||||| |||| |||||| ||| || || ||    
T  1300721 aagtgtgattgaagtattatatgattgtttatcaggttaatatgttaactttttataaaatatttcatattgtccgtaatttaaaaatgaaaagtaaacc 1300820  T
Q  198 ctcctctcctttcacctctcaaaccctccatccaaacacac 238  Q
    |||| |||| |||| ||  ||||||||||||||||||||||    
T  1300821 ctcccctccattcatcttccaaaccctccatccaaacacac 1300861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 107 - 151
Target Start/End: Original strand, 31799030 - 31799074
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgttattatttcaattttt 151  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||    
T  31799030 ttgaagtattatatgatcatttatcatgttgttaattcaattttt 31799074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 99 - 139
Target Start/End: Original strand, 32926746 - 32926786
Alignment:
Q  99 aagtatgattgaagtattatatgatcatttatcatgttatt 139  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  32926746 aagtgtgattgaagtattatatgatcatttatcatgttatt 32926786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 143
Target Start/End: Complemental strand, 2892981 - 2892942
Alignment:
Q  104 tgattgaagtattatatgatcatttatcatgttattattt 143  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  2892981 tgattgaagtattatatgatcgtttatcatgttattattt 2892942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 184
Target Start/End: Original strand, 31849210 - 31849297
Alignment:
Q  98 caagtatgattgaagtattatatgatcatttatcatgttattatttcaatttttt-aaagacattttatcgtgtccataatataaaaa 184  Q
    ||||| ||||||||||||||||| ||  ||||||| |||| ||| | |||||||| ||||||||||||| |||||| |||| ||||||    
T  31849210 caagtgtgattgaagtattatattattgtttatcacgttaatatgttaattttttaaaagacattttatagtgtccgtaatttaaaaa 31849297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 238
Target Start/End: Complemental strand, 30487449 - 30487309
Alignment:
Q  98 caagtatgattgaagtattatatgatcatttatcatgttattat-ttcaattttttaaagacattttatcgtgtccataatataaaaaagaatagcaatc 196  Q
    ||||| ||||||||||||||||| ||  |||||||||||| ||| || | ||||| |||||||||| ||  ||||| |||| ||| || ||| ||  | |    
T  30487449 caagtgtgattgaagtattatattattgtttatcatgttaatatgttgactttttaaaagacatttcatactgtcc-taatttaacaatgaaaagtgaac 30487351  T
Q  197 cctcctctcctttcacctctcaaaccctccatccaaacacac 238  Q
    ||||| |||| ||| ||||  |||||||||||||||||||||    
T  30487350 cctcccctcccttcccctcctaaaccctccatccaaacacac 30487309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 155
Target Start/End: Complemental strand, 4097655 - 4097599
Alignment:
Q  99 aagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaa 155  Q
    |||| ||||||||||||||||||||| |||||||||||| ||| | || ||||||||    
T  4097655 aagtgtgattgaagtattatatgatcgtttatcatgttaatatgttaactttttaaa 4097599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 151
Target Start/End: Original strand, 6695067 - 6695111
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgttattatttcaattttt 151  Q
    |||||||||||||||||||||||||||||| | ||||| ||||||    
T  6695067 ttgaagtattatatgatcatttatcatgttgtaatttctattttt 6695111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 104 - 151
Target Start/End: Complemental strand, 2892741 - 2892694
Alignment:
Q  104 tgattgaagtattatatgatcatttatcatgttattatttcaattttt 151  Q
    |||||||| |||||||||||  |||||||||||||||||| |||||||    
T  2892741 tgattgaaatattatatgattgtttatcatgttattattttaattttt 2892694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 155
Target Start/End: Complemental strand, 4097368 - 4097322
Alignment:
Q  109 gaagtattatatgatcatttatcatgttattatttcaattttttaaa 155  Q
    |||||||| ||||||||||||||||||| ||| ||||||||| ||||    
T  4097368 gaagtattgtatgatcatttatcatgttgttaattcaattttctaaa 4097322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 155
Target Start/End: Original strand, 13583820 - 13583876
Alignment:
Q  99 aagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaa 155  Q
    |||| |||||||| |||||||||||||||||| ||||||  || | |||||||||||    
T  13583820 aagtgtgattgaaatattatatgatcatttattatgttaacatgttaattttttaaa 13583876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 155
Target Start/End: Original strand, 15353472 - 15353520
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaa 155  Q
    |||| ||||||||||||||||||| ||||| ||| ||||||||| ||||    
T  15353472 ttgatgtattatatgatcatttataatgttgttaattcaattttctaaa 15353520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 155
Target Start/End: Complemental strand, 15373734 - 15373686
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaa 155  Q
    |||| ||||||||||||||||| ||||||| ||| ||||||||| ||||    
T  15373734 ttgatgtattatatgatcatttgtcatgttgttaattcaattttctaaa 15373686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 139
Target Start/End: Original strand, 17155457 - 17155497
Alignment:
Q  99 aagtatgattgaagtattatatgatcatttatcatgttatt 139  Q
    |||| ||||| |||||||||||||||| |||||||||||||    
T  17155457 aagtgtgatttaagtattatatgatcagttatcatgttatt 17155497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 152
Target Start/End: Original strand, 17842488 - 17842536
Alignment:
Q  104 tgattgaagtattatatgatcatttatcatgttattatttcaatttttt 152  Q
    ||||| ||||| | ||||||||||||||||| | |||||||||||||||    
T  17842488 tgatttaagtactttatgatcatttatcatgatgttatttcaatttttt 17842536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 139
Target Start/End: Original strand, 32922446 - 32922486
Alignment:
Q  99 aagtatgattgaagtattatatgatcatttatcatgttatt 139  Q
    |||| |||| ||||||||||||||| |||||||||||||||    
T  32922446 aagtgtgatcgaagtattatatgattatttatcatgttatt 32922486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 155
Target Start/End: Complemental strand, 34176706 - 34176658
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaa 155  Q
    ||||| |||||||||||||||||| || || ||| ||||||||||||||    
T  34176706 ttgaaatattatatgatcatttattatattgttaattcaattttttaaa 34176658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 99 - 235
Target Start/End: Complemental strand, 16439 - 16302
Alignment:
Q  99 aagtatgattgaagtattatatgatcatttatcatgttattatttcaatttttta-aagacattttatcgtgtccataatataaaaaagaatagcaatcc 197  Q
    |||| ||||||||||||||||||||  |||||||||||| ||| | ||  ||||| || |||||| || |||| |||||| |||||| ||| || || ||    
T  16439 aagtgtgattgaagtattatatgattgtttatcatgttaatatgttaacgttttataaaacatttcatagtgttcataatttaaaaatgaaaagtaaacc 16340  T
Q  198 ctcctctcctttcacctctcaaaccctccatccaaaca 235  Q
    |||| |||||||  ||||  ||||||||||||||||||    
T  16339 ctcccctccttttccctcctaaaccctccatccaaaca 16302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 107 - 155
Target Start/End: Original strand, 8256 - 8304
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaa 155  Q
    ||||||||||||||||||||| |||||||| ||| ||||||||||||||    
T  8256 ttgaagtattatatgatcattaatcatgttgttaattcaattttttaaa 8304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 150
Target Start/End: Original strand, 52994 - 53037
Alignment:
Q  107 ttgaagtattatatgatcatttatcatgttattatttcaatttt 150  Q
    ||||| |||||||||||||||||||||||| ||| |||||||||    
T  52994 ttgaaatattatatgatcatttatcatgttgttagttcaatttt 53037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 148
Target Start/End: Complemental strand, 69340 - 69301
Alignment:
Q  109 gaagtattatatgatcatttatcatgttattatttcaatt 148  Q
    ||||||||||||||||||||||||| || |||||||||||    
T  69340 gaagtattatatgatcatttatcatcttgttatttcaatt 69301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 155
Target Start/End: Complemental strand, 1529 - 1484
Alignment:
Q  110 aagtattatatgatcatttatcatgttattatttcaattttttaaa 155  Q
    ||||||||||||||||||||||| ||| ||| ||||||||| ||||    
T  1529 aagtattatatgatcatttatcaagttgttaattcaattttctaaa 1484  T

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Target: scaffold0096 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 152
Target Start/End: Original strand, 6690 - 6737
Alignment:
Q  104 tgattgaagtattatatgatcatttatcatgttattatttcaatttttt 152  Q
    ||||||||||||||||||||| ||||| |||||| ||||| ||||||||    
T  6690 tgattgaagtattatatgatcgtttat-atgttaatattttaatttttt 6737  T

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