View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2687_low_7 (Length: 661)

Name: NF2687_low_7
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2687_low_7
NF2687_low_7
[»] chr2 (7 HSPs)
chr2 (1-494)||(26510935-26511425)
chr2 (273-447)||(14815333-14815504)
chr2 (320-416)||(9730589-9730685)
chr2 (572-624)||(26509939-26509991)
chr2 (373-446)||(26511693-26511766)
chr2 (224-337)||(4733015-4733128)
chr2 (522-567)||(26510864-26510909)
[»] chr5 (12 HSPs)
chr5 (224-490)||(19827915-19828181)
chr5 (224-456)||(8588860-8589093)
chr5 (320-490)||(19831805-19831975)
chr5 (326-456)||(23136813-23136940)
chr5 (308-455)||(35891866-35892013)
chr5 (308-433)||(38226126-38226251)
chr5 (308-456)||(14062346-14062494)
chr5 (307-490)||(8590271-8590454)
chr5 (397-486)||(14575277-14575366)
chr5 (276-341)||(6037274-6037339)
chr5 (316-486)||(35891506-35891672)
chr5 (321-397)||(2735336-2735412)
[»] chr8 (5 HSPs)
chr8 (225-456)||(8085442-8085673)
chr8 (206-456)||(33136808-33137059)
chr8 (317-490)||(7000653-7000826)
chr8 (314-445)||(7000992-7001122)
chr8 (266-340)||(33137503-33137577)
[»] chr1 (5 HSPs)
chr1 (191-445)||(12658994-12659240)
chr1 (224-490)||(12657805-12658073)
chr1 (335-461)||(12664068-12664194)
chr1 (423-490)||(12664408-12664475)
chr1 (295-357)||(6396183-6396245)
[»] chr6 (7 HSPs)
chr6 (308-493)||(10457921-10458106)
chr6 (273-445)||(32056490-32056659)
chr6 (256-357)||(16118517-16118618)
chr6 (308-453)||(6421591-6421728)
chr6 (1-79)||(32055396-32055471)
chr6 (266-382)||(32054913-32055030)
chr6 (29-122)||(20996403-20996495)
[»] chr3 (5 HSPs)
chr3 (228-453)||(53114193-53114419)
chr3 (369-490)||(6761836-6761957)
chr3 (320-379)||(1723240-1723299)
chr3 (316-381)||(27647895-27647960)
chr3 (426-454)||(1537962-1537990)
[»] chr4 (10 HSPs)
chr4 (265-490)||(32838941-32839164)
chr4 (321-461)||(46867485-46867624)
chr4 (326-453)||(20447150-20447273)
chr4 (392-492)||(41982695-41982795)
chr4 (314-456)||(46868792-46868933)
chr4 (266-351)||(41982602-41982687)
chr4 (374-449)||(20445895-20445970)
chr4 (317-445)||(30783476-30783604)
chr4 (328-452)||(51537963-51538087)
chr4 (369-452)||(51537309-51537392)
[»] chr7 (7 HSPs)
chr7 (314-456)||(47304117-47304259)
chr7 (265-445)||(5987699-5987880)
chr7 (211-304)||(9024986-9025080)
chr7 (308-436)||(20268323-20268456)
chr7 (419-456)||(30335102-30335139)
chr7 (205-358)||(30332450-30332603)
chr7 (401-443)||(30332378-30332420)
[»] scaffold0426 (1 HSPs)
scaffold0426 (322-453)||(3461-3591)


Alignment Details
Target: chr2 (Bit Score: 396; Significance: 0; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 494
Target Start/End: Complemental strand, 26511425 - 26510935
Alignment:
Q  1 aaattacaataacatcattttcatccatagtgtttctattaacctctctttcaaatttttatggggtcctaatgaaaagaaaagttaacgaggtaactga 100  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  26511425 aaattacaataacatcattttcatccatagtgtttttcttaacctctctttcaaatttttatggcgtcctaatgaaaagaaaagttaccgaggtaactga 26511326  T
Q  101 aacatgactttatctcatagatccacaagttgttgcaataaggttttcatcatcatcttgggtgcaaaatatatgcaaaatgcttttgggtgtagaaaac 200  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  26511325 aacatgactttatctcatagatccagaagttgtggcaataaggttttcatcatcatcttgggtgcaaaaaatatgcaaaatgcttgtgggtgtagaaaac 26511226  T
Q  201 agatgataatttgaagtggtttgaacacttttgcatgaagaccttgaaaactacattcaacatagatgaagcttcatttcaaacatgcagaatgtaataa 300  Q
    ||||   ||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  26511225 agat---aatttgaagtggtttcaacacttttgcatgaagaccttggagactacattcaacatagatgaagtttcatttcaaacatgcagaatgtaataa 26511129  T
Q  301 ataatggttaaatacattcttttagtttttagtatttatttgacagtatcaaggatcagtttaatagctaagataaataatatagggattgatttgatag 400  Q
    ||||| ||||||||  |||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||||| ||||||| ||||||||||    
T  26511128 ataatagttaaatatgttcttttagtttttagtatttatttgacagcatcaaggatcagtttaataattaagataaataatttagggatcgatttgatag 26511029  T
Q  401 tgaataacataattcatggaccatcttgatttttaatgaataattcagggatcgatctgatgatctagaaatttgtaatgattttcattttaag 494  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  26511028 tgaataacataattcatggaccatcttgatttttaatgaataattcagggatcgatatgatgatctagaaatttgtaatgattttcattttaag 26510935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 273 - 447
Target Start/End: Complemental strand, 14815504 - 14815333
Alignment:
Q  273 ttcatttcaaacatgcagaatgtaataaataatggttaaatacattcttttagtttttagtatttatttgacagtatcaaggatcagtttaatagctaag 372  Q
    ||||||||||||||||| |  ||||||||||   ||| ||| |||| |||||| |||||| |||||||||||| |||||||||| ||||| |||| | ||    
T  14815504 ttcatttcaaacatgcaaatggtaataaatatcagtttaattcatt-ttttagcttttagcatttatttgacattatcaaggattagtttgatagttgag 14815406  T
Q  373 ataaataatatagggattgatttgatagtgaataacataattcatggaccatcttgatttttaatgaataattca 447  Q
    |||||| ||  |  | | ||||||||||||| | |||||| |||  |||||||||||||||| ||||||||||||    
T  14815405 ataaattattgaatggtcgatttgatagtgagtgacataactca--gaccatcttgatttttcatgaataattca 14815333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 320 - 416
Target Start/End: Complemental strand, 9730685 - 9730589
Alignment:
Q  320 ttttagtttttagtatttatttgacagtatcaaggatcagtttaatagctaagataaataatatagggattgatttgatagtgaataacataattca 416  Q
    |||||| |||||| |||||||||||| |||||||||||| ||| |||  |||  |||||||| ||| ||||||||||||||||| | ||||| ||||    
T  9730685 ttttaggttttagcatttatttgacaatatcaaggatcaatttgataaataaattaaataatttagagattgatttgatagtgagtgacatagttca 9730589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 572 - 624
Target Start/End: Complemental strand, 26509991 - 26509939
Alignment:
Q  572 aaggatgaaaatgcatattcattcattaattgtaattaagatctttaacctct 624  Q
    ||||||||||||||||||||||| ||||||| ||||||||| |||||||||||    
T  26509991 aaggatgaaaatgcatattcatttattaattttaattaagacctttaacctct 26509939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 373 - 446
Target Start/End: Original strand, 26511693 - 26511766
Alignment:
Q  373 ataaataatatagggattgatttgatagtgaataacataattcatggaccatcttgatttttaatgaataattc 446  Q
    |||||||||  || |||||||||||| |||  | ||||||||||  ||||||||| ||||||||||||||||||    
T  26511693 ataaataattcagagattgatttgatggtgggtgacataattcagagaccatcttaatttttaatgaataattc 26511766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 224 - 337
Target Start/End: Original strand, 4733015 - 4733128
Alignment:
Q  224 aacacttttgcatgaagaccttgaaaactacattcaacatagatgaagcttcatttcaaacatgcagaatgtaataaataatggtt-aaatacattcttt 322  Q
    |||||||||||| |||||||||| | ||||   ||||||| |||| | |||||||| ||||||||| ||  ||||||||||  ||| ||| |||||||||    
T  4733015 aacacttttgcacgaagaccttggagactaagctcaacatggatgtaacttcattt-aaacatgcaaaagataataaataacagttaaaacacattcttt 4733113  T
Q  323 tagtttttagtattt 337  Q
    ||| ||||| |||||    
T  4733114 tagcttttaatattt 4733128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 522 - 567
Target Start/End: Complemental strand, 26510909 - 26510864
Alignment:
Q  522 ttttcaatcaatttcgttcctaaatatgtggtatatgagctggcaa 567  Q
    ||||| ||||||||||| ||||||||| ||||||||||| ||||||    
T  26510909 ttttcgatcaatttcgtccctaaatatatggtatatgagttggcaa 26510864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 107; Significance: 3e-53; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 224 - 490
Target Start/End: Complemental strand, 19828181 - 19827915
Alignment:
Q  224 aacacttttgcatgaagaccttgaaaactacattcaacatagatgaagcttcatttcaaacatgcagaatgtaataaataatggttaaatacattctttt 323  Q
    ||||||||| |||||| | ||||||  |||  |||||||| |||||| |||||||||||| ||||| ||  ||||||||||| |||||| ||||||||||    
T  19828181 aacacttttccatgaaaatcttgaaggctaggttcaacatcgatgaatcttcatttcaaatatgcaaaagataataaataatagttaaacacattctttt 19828082  T
Q  324 agtttttagtatttatttgacagtatcaaggatcagtttaatagctaagataaataatatagggattgatttgatagtgaataacataattcatggacca 423  Q
    ||||||||| ||||| || |||  |||| |||||||||| ||||  |||||||||||| || | || ||||||||| ||| | |||||||||||||||||    
T  19828081 agtttttagcatttacttaacaacatcatggatcagttttatagtcaagataaataatttaagaatcgatttgatattgagtgacataattcatggacca 19827982  T
Q  424 tcttgatttttaatgaataattcagggatcgatctgatgatctagaaatttgtaatgattttcattt 490  Q
    |||||||||||||||||||||| |||||||||| |||   | ||  |||||||||||| ||||||||    
T  19827981 tcttgatttttaatgaataatttagggatcgatttgacagtgtaacaatttgtaatgactttcattt 19827915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 224 - 456
Target Start/End: Complemental strand, 8589093 - 8588860
Alignment:
Q  224 aacacttttgcatgaagaccttgaaaactacattcaacatagatgaagcttcatttcaaacatgcagaatgtaataaataatgg--ttaaatacattctt 321  Q
    ||||||||||||||||||| ||| |  ||||||| ||||| |||||| |||||||| ||||||| | |||||||||||| |  |  ||||| ||||||||    
T  8589093 aacacttttgcatgaagactttggaggctacattgaacatggatgaaacttcattttaaacatgaa-aatgtaataaattagagagttaaacacattctt 8588995  T
Q  322 ttagtttttagtatttatttgacagtatcaaggatcagtttaatagctaagataaataatatagggattgatttgatagtgaa-taacataattcatgga 420  Q
    | || |||||| |||||||||| | |||||||||||| ||| |||| |||||| ||||||  |||||| ||||||||| |||| | |||||||||| |||    
T  8588994 tcagattttagaatttatttgatactatcaaggatcaatttgatagttaagatgaataattaagggatcgatttgata-tgaagtgacataattcaagga 8588896  T
Q  421 ccatcttgatttttaatgaataattcagggatcgat 456  Q
    ||||||| ||||||| | ||||||| | ||||||||    
T  8588895 ccatcttaatttttagtaaataatttaaggatcgat 8588860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 320 - 490
Target Start/End: Original strand, 19831805 - 19831975
Alignment:
Q  320 ttttagtttttagtatttatttgacagtatcaaggatcagtttaatagctaagataaataatatagggattgatttgatagtgaataacataattcatgg 419  Q
    ||||||||||||| |||||||||||| |||||  ||||||||| || | |||||||||||||  |  ||| ||||||||||||| | ||||||||||  |    
T  19831805 ttttagtttttagcatttatttgacaatatcagagatcagtttgatcgttaagataaataattcaatgatcgatttgatagtgattgacataattcacag 19831904  T
Q  420 accatcttgatttttaatgaataattcagggatcgatctgatgatctagaaatttgtaatgattttcattt 490  Q
    |||||||||||||||||| ||||||||| ||||| || |||  || ||  |||||||||||| ||||||||    
T  19831905 accatcttgatttttaattaataattcaaggatcaatttgacaatgtaacaatttgtaatgactttcattt 19831975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 326 - 456
Target Start/End: Complemental strand, 23136940 - 23136813
Alignment:
Q  326 tttttagtatttatttgacagtatcaaggatcagtttaatagctaagataaataatatagggattgatttgatagtgaataacataattcatggaccatc 425  Q
    ||||||| |||||||||||||||||||   |||  || |||| || ||||||||||| ||||||  |||||||||||| | |||||||||||| |||| |    
T  23136940 tttttagcatttatttgacagtatcaa---tcaaattgatagatacgataaataatacagggatcaatttgatagtgagtgacataattcatgaaccaac 23136844  T
Q  426 ttgatttttaatgaataattcagggatcgat 456  Q
    ||||||||||||||||||||||| |||||||    
T  23136843 ttgatttttaatgaataattcagagatcgat 23136813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 308 - 455
Target Start/End: Original strand, 35891866 - 35892013
Alignment:
Q  308 ttaaatacattcttttagtttttagtatttatttgacagtatcaaggatcagtttaatagctaagataaataatatagggattgatttgatagtgaataa 407  Q
    ||||| |||||||||||||||||| ||||||||||| || ||||  |||||| || || | |||||||||||||  |  ||| ||||||||||||  | |    
T  35891866 ttaaacacattcttttagtttttaatatttatttgatagcatcagagatcagattgattgataagataaataattcatagatagatttgatagtgggtga 35891965  T
Q  408 cataattcatggaccatcttgatttttaatgaataattcagggatcga 455  Q
    ||||||||| | |||| ||||||||||||||||||||| |||||||||    
T  35891966 cataattcaagaaccaacttgatttttaatgaataatttagggatcga 35892013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 308 - 433
Target Start/End: Original strand, 38226126 - 38226251
Alignment:
Q  308 ttaaatacattcttttagtttttagtatttatttgacagtatcaaggatcagtttaatagctaagataaataatatagggattgatttgatagtgaataa 407  Q
    ||||||||||| ||||| ||||||  |||||||||| ||||||||||||||| || |||| ||||||||||||| | | ||| | ||||||| ||| | |    
T  38226126 ttaaatacattattttaatttttaacatttatttgatagtatcaaggatcagattgatagataagataaataatttggtgatcgttttgataatgagtga 38226225  T
Q  408 cataattcatggaccatcttgatttt 433  Q
    ||||||||||||||||  ||||||||    
T  38226226 cataattcatggaccaatttgatttt 38226251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 308 - 456
Target Start/End: Complemental strand, 14062494 - 14062346
Alignment:
Q  308 ttaaatacattcttttagtttttagtatttatttgacagtatcaaggatcagtttaatagctaagataaataatatagggattgatttgatagtgaataa 407  Q
    ||||| ||||||||| |  |||| | ||||||||||| ||||| ||||||| ||| |||  |||||||||||||  |  || |||||||||| ||||| |    
T  14062494 ttaaacacattctttcacatttttgcatttatttgacggtatctaggatcaatttgatatataagataaataattcatagaatgatttgatattgaatga 14062395  T
Q  408 cataattcatggaccatcttgatttttaatgaataattcagggatcgat 456  Q
    ||||||| |||||||| ||||||||| ||||| ||||| ||||||||||    
T  14062394 cataatttatggaccaacttgattttcaatgagtaatttagggatcgat 14062346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 307 - 490
Target Start/End: Original strand, 8590271 - 8590454
Alignment:
Q  307 gttaaatacattcttttagtttttagtatttatttgacagtatcaaggatcagtttaatagctaagataaataatatagggattgatttgatagtgaata 406  Q
    |||||| ||||||||| | ||||||| |||||||||| |||| ||  ||||| |||||||| |||||||||||||  |   ||  ||||||||| ||| |    
T  8590271 gttaaacacattctttcattttttagcatttatttgatagtaccattgatcaatttaatagttaagataaataatccatatatcaatttgatag-gaaga 8590369  T
Q  407 -acataattcatggaccatcttgatttttaatgaataattcagggatcgatctgatgatctagaaatttgtaatgattttcattt 490  Q
     |||||||||| || |||| ||| ||||||  |||||||||| |||||||| |||  || ||  ||||| |||||||||||||||    
T  8590370 gacataattcaagggccatattgttttttagggaataattcaaggatcgatttgacaatataacaatttataatgattttcattt 8590454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 397 - 486
Target Start/End: Complemental strand, 14575366 - 14575277
Alignment:
Q  397 atagtgaataacataattcatggaccatcttgatttttaatgaataattcagggatcgatctgatgatctagaaatttgtaatgattttc 486  Q
    ||||||| | |||||||||||| |||| ||||||||||||||||||||| |||||| ||| |||  || ||  |||||||||||| ||||    
T  14575366 atagtgagtgacataattcatgaaccaacttgatttttaatgaataatttagggattgatttgacaatgtaacaatttgtaatgactttc 14575277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 276 - 341
Target Start/End: Complemental strand, 6037339 - 6037274
Alignment:
Q  276 atttcaaacatgcagaatgtaataaataatggttaaatacattcttttagtttttagtatttattt 341  Q
    |||| ||||||||| || |||||||||||| |  ||||| ||||||||||||||||| ||||||||    
T  6037339 attttaaacatgcaaaaggtaataaataataggcaaatatattcttttagtttttagcatttattt 6037274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 486
Target Start/End: Complemental strand, 35891672 - 35891506
Alignment:
Q  316 attcttttagtttttagtatttatttgacagtatcaaggatcagtttaatagctaagataaataatatagggattgatttgatagtgaataacataattc 415  Q
    ||||||||  ||||||  |||||||||||| |||||| ||| || || |||| ||| |||||||||  | ||||  |||||||||||| ||| | |||||    
T  35891672 attcttttgatttttaacatttatttgacaatatcaaagattagattgatagataaaataaataattcatggatcaatttgatagtgagtaatacaattc 35891573  T
Q  416 atggaccatcttgatttttaatgaataattcagggatcgatctgatgatctagaaatttgtaatgattttc 486  Q
    | |||||| |    |||||||||||||||| | ||||| || ||||  | ||  ||||||||||| |||||    
T  35891572 agggaccaac----tttttaatgaataatttatggatcaatttgatagtgtaacaatttgtaatggttttc 35891506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 321 - 397
Target Start/End: Complemental strand, 2735412 - 2735336
Alignment:
Q  321 tttagtttttagtatttatttgacagtatcaaggatcagtttaatagctaagataaataatatagggattgatttga 397  Q
    ||||||||||||||||||||| |   ||| |||||||| | | |||| |||||||||||||  |||||| |||||||    
T  2735412 tttagtttttagtatttatttaattatatgaaggatcattatgatagttaagataaataattgagggatcgatttga 2735336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 3e-37; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 225 - 456
Target Start/End: Complemental strand, 8085673 - 8085442
Alignment:
Q  225 acacttttgcatgaagaccttgaaaactacattcaacatagatgaagcttcatttcaaacatgcagaatgtaataaataatggttaaatacattctttta 324  Q
    |||||||||||||||||| ||| |  ||||||| | |||  ||||| | | ||||||||||| || ||  || |||||||| |||||| ||||| |||      
T  8085673 acacttttgcatgaagacattggacgctacattaagcatgaatgaaacattatttcaaacatccaaaagatagtaaataatagttaaacacattttttag 8085574  T
Q  325 gtttttagtatttatttgacagtatcaaggatcagtttaatagctaagataaataatatagggattgatttgatagtgaataacataattcatggaccat 424  Q
    |||||||| |||||||||||| |||||   |||||||  |||| ||||||||||||| ||  ||| ||||||||||||| | ||||||||||||||||||    
T  8085573 gtttttagcatttatttgacaatatcagatatcagttcgatagttaagataaataatttaatgatcgatttgatagtgagtgacataattcatggaccat 8085474  T
Q  425 cttgatttttaatgaataattcagggatcgat 456  Q
    ||||||||||||||| |||| ||| |||||||    
T  8085473 cttgatttttaatgagtaatccagtgatcgat 8085442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 206 - 456
Target Start/End: Complemental strand, 33137059 - 33136808
Alignment:
Q  206 ataatttgaagtggtttg-aacacttttgcatgaagaccttgaaaactacattcaacatagatgaagcttcatttcaaacatgcagaatgtaataaataa 304  Q
    |||||||||| ||||||  |||||| |||| ||| ||||||  |  |||| |||||||| |||||| |||||||||||| ||||| || |||||||||||    
T  33137059 ataatttgaattggttttcaacactgttgcctgacgacctttgatgctacgttcaacatggatgaaacttcatttcaaatatgcaaaaggtaataaataa 33136960  T
Q  305 tggttaaatacattcttttagtttttagtatttatttgacagtatcaaggatcagtttaatagctaagataaataatatagggattgatttgatagtgaa 404  Q
      |||||| | ||| ||||| ||||||| |||||||||  |||||||  ||||||||| |||| ||| || |||| | |||   |  ||||||||| ||     
T  33136959 ccgttaaacatattattttaatttttagcatttatttgcgagtatcagagatcagtttgatagttaacatgaatactttagaagtcaatttgatagcgag 33136860  T
Q  405 taacataattcatggaccatcttgatttttaatgaataattcagggatcgat 456  Q
    | |||||||||| |||| ||||||||||| ||||||||||| ||||||||||    
T  33136859 tgacataattcaaggacgatcttgattttcaatgaataatttagggatcgat 33136808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 317 - 490
Target Start/End: Complemental strand, 7000826 - 7000653
Alignment:
Q  317 ttcttttagtttttagtatttatttgacagtatcaaggatcagtttaatagctaagataaataatatagggattgatttgatagtgaataacataattca 416  Q
    |||||||||||||||| ||||||||||| ||||||  |||||  || |||| || ||||||||||  || ||| ||||||||| | | | ||||||||||    
T  7000826 ttcttttagtttttagcatttatttgacggtatcagagatcaaattgatagatatgataaataattcagagatcgatttgatattaagtgacataattca 7000727  T
Q  417 tggaccatcttgatttttaatgaataattcagggatcgatctgatgatctagaaatttgtaatgattttcattt 490  Q
     |||||| |||||||||||| |||||||| || ||| ||| |||| || ||  ||||| |||||| ||| ||||    
T  7000726 aggaccaacttgatttttaaggaataatttagagattgatttgataatgtaccaatttataatgactttaattt 7000653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 314 - 445
Target Start/End: Original strand, 7000992 - 7001122
Alignment:
Q  314 acattcttttagtttttagtatttatttgacagtatcaaggatcagtttaatagctaagataaataatatagggattgatttgatagtgaataacataat 413  Q
    |||| |||||||| ||||  |||||||||||| ||||||||||||  || |||| ||  ||||||||| |||| ||  |||||| | ||| | |||||||    
T  7000992 acatgcttttagtgtttaacatttatttgacaatatcaaggatcaaattgatagatataataaataatttagg-atccatttgaaattgagtgacataat 7001090  T
Q  414 tcatggaccatcttgatttttaatgaataatt 445  Q
    |||||||||  |||||||||||| ||||||||    
T  7001091 tcatggacccacttgatttttaaggaataatt 7001122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 266 - 340
Target Start/End: Original strand, 33137503 - 33137577
Alignment:
Q  266 atgaagcttcatttcaaacatgcagaatgtaataaataatggttaaatacattcttttagtttttagtatttatt 340  Q
    ||||| |||||| |||||||| || || |||||||||||   ||||| || || |||||||||||||||||||||    
T  33137503 atgaaacttcatgtcaaacattcaaaaggtaataaataacaattaaacacgtttttttagtttttagtatttatt 33137577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 2e-35; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 191 - 445
Target Start/End: Original strand, 12658994 - 12659240
Alignment:
Q  191 tgtagaaaacagatgataatttgaagtggtttg-aacacttttgcatgaagaccttgaaaactacattcaacatagatgaagcttcatttcaaacatgca 289  Q
    ||||||||||| | || |||||||||||||||  ||||||||||||||||||||||  |   ||| || ||||| ||||||  ||||||||||||||| |    
T  12658994 tgtagaaaacaaa-gagaatttgaagtggttttcaacacttttgcatgaagaccttcgaggatacgttgaacatggatgaaatttcatttcaaacatg-a 12659091  T
Q  290 gaatgtaataaataatggttaaatacattcttttagtttttagtatttatttgacagtatcaaggatcagtttaatagctaagataaataatatagggat 389  Q
     ||||||||||||||  |||||| ||||||||| ||||||||| |||||||||| ||      |||||| ||| |||| |||||||||||||  || |||    
T  12659092 aaatgtaataaataa-agttaaacacattctttcagtttttagcatttatttgatag------ggatcaatttgatagttaagataaataattcagagat 12659184  T
Q  390 tgatttgatagtgaataacataattcatggaccatcttgatttttaatgaataatt 445  Q
    ||||||||||| ||   |||||||||| |||||||||||||||||| |||||||||    
T  12659185 tgatttgatagggagagacataattcaaggaccatcttgatttttagtgaataatt 12659240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 224 - 490
Target Start/End: Complemental strand, 12658073 - 12657805
Alignment:
Q  224 aacacttttgcatgaagaccttgaaaactacattcaacatagatgaagcttcatttcaaacatgcagaatgtaataaataatggttaaatacattctttt 323  Q
    ||||||||| |||||||||||| ||   || ||| || || |||||| ||||||||||||| || | |||||||| ||| ||  ||||| |||||||||     
T  12658073 aacacttttacatgaagacctttaaggatatattgaatatggatgaaacttcatttcaaacttgaa-aatgtaattaattatatttaaacacattctttc 12657975  T
Q  324 agtttttagtatttatttgacagtatcaaggatcagtttaatagctaagataaataatatagggattgatttgatagtgaataac----ataattcatgg 419  Q
    | ||||||| ||||||||||| || ||| |||||| ||| |||| |||||||||||||  |||||| ||||||||||||| | ||    |||||||| ||    
T  12657974 attttttaggatttatttgactgtttcagggatcaatttgatagttaagataaataattcagggatcgatttgatagtgagtgacatatataattcaagg 12657875  T
Q  420 accatcttgatttttaatgaataattcagggatcgatctgatgatctagaaatttgtaatgattttcattt 490  Q
    || ||||||| |||||||||||||| ||||||| ||| |||  || ||  |||||||||| | ||||||||    
T  12657874 acaatcttga-ttttaatgaataatccagggattgatttgacaatataataatttgtaattactttcattt 12657805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 335 - 461
Target Start/End: Complemental strand, 12664194 - 12664068
Alignment:
Q  335 tttatttgacagtatcaaggatcagtttaatagctaagataaataatatagggattgatttgatagtgaataacataattcatggaccatcttgattttt 434  Q
    ||||||||||||||||||| |||| ||| |||| |||||||||||||  | ||||  |||| ||||||  | |||||||||| ||||||| || ||||||    
T  12664194 tttatttgacagtatcaagaatcaatttgatagttaagataaataattcatggatcaatttaatagtgtgtgacataattcaaggaccattttaattttt 12664095  T
Q  435 aatgaataattcagggatcgatctgat 461  Q
    ||||||||||||| |||| ||| ||||    
T  12664094 aatgaataattcaaggattgatttgat 12664068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 423 - 490
Target Start/End: Original strand, 12664408 - 12664475
Alignment:
Q  423 atcttgatttttaatgaataattcagggatcgatctgatgatctagaaatttgtaatgattttcattt 490  Q
    ||||||||||||||||||||||||| |||||||| |||  || ||  |||||||||||| ||||||||    
T  12664408 atcttgatttttaatgaataattcaaggatcgatgtgacaatgtaataatttgtaatgaatttcattt 12664475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 357
Target Start/End: Original strand, 6396183 - 6396245
Alignment:
Q  295 taataaataatggttaaatacattcttttagtttttagtatttatttgacagtatcaaggatc 357  Q
    ||||||||||| |||||| ||||||||||| ||||||| |||||||||||  ||||| |||||    
T  6396183 taataaataatagttaaacacattcttttattttttagcatttatttgactatatcagggatc 6396245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 1e-33; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 308 - 493
Target Start/End: Original strand, 10457921 - 10458106
Alignment:
Q  308 ttaaatacattcttttagtttttagtatttatttgacagtatcaaggatcagtttaatagctaagataaataatatagggattgatttgatagtgaataa 407  Q
    ||||| ||||||||||||||||||  |||||||||||||| |||  |||||  ||||||| ||||||||||||| ||||||| ||||||||| ||| | |    
T  10457921 ttaaacacattcttttagtttttaacatttatttgacagtctcagagatcatattaatagataagataaataatttagggatcgatttgataatgagtga 10458020  T
Q  408 cataattcatggaccatcttgatttttaatgaataattcagggatcgatctgatgatctagaaatttgtaatgattttcattttaa 493  Q
    ||||||||| |||||| ||| |||||||||||||||||||  ||||||| |||   | ||  |||||||||||| |||| ||||||    
T  10458021 cataattcagggaccaacttcatttttaatgaataattcaacgatcgatttgacagtgtaacaatttgtaatgactttcgttttaa 10458106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 273 - 445
Target Start/End: Original strand, 32056490 - 32056659
Alignment:
Q  273 ttcatttcaaacatgcagaatgtaataaataatggttaaatacattcttttagtttttagtatttatttgacagtatcaaggatcagtttaatagctaag 372  Q
    |||||||||| |||||| || ||||| | |||  |||||| ||||||||||||||||||| ||||||||||  ||||||  ||||| ||| |||| ||||    
T  32056490 ttcatttcaaccatgcaaaaggtaatga-taagagttaaacacattcttttagtttttagcatttatttga--gtatcagagatcaatttgatagttaag 32056586  T
Q  373 ataaataatatagggattgatttgatagtgaataacataattcatggaccatcttgatttttaatgaataatt 445  Q
    |||||||||  || |||| |||||||||||| | |||||||| | ||| ||||||||||||||||||||||||    
T  32056587 ataaataattcagagattaatttgatagtgagtgacataatttagggatcatcttgatttttaatgaataatt 32056659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 256 - 357
Target Start/End: Original strand, 16118517 - 16118618
Alignment:
Q  256 ttcaacatagatgaagcttcatttcaaacatgcagaatgtaataaataatggttaaatacattcttttagtttttagtatttatttgacagtatcaagga 355  Q
    ||||||||  ||||| |||||||| ||||||| | || ||||||||||||||||||| | |||||||||||||||   ||||||||||||||||||||||    
T  16118517 ttcaacatgaatgaaacttcattttaaacatggaaaaggtaataaataatggttaaacatattcttttagtttttgacatttatttgacagtatcaagga 16118616  T
Q  356 tc 357  Q
    ||    
T  16118617 tc 16118618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 308 - 453
Target Start/End: Complemental strand, 6421728 - 6421591
Alignment:
Q  308 ttaaatacattcttttagtttttagtatttatttgacagtatcaaggatcagtttaatagctaagataaataatatagggattgatttgatagtgaataa 407  Q
    ||||| |||||||||||||||||| | ||||||||||| ||||  ||||||    ||||    ||||||||||| ||||||| ||||||||||||| | |    
T  6421728 ttaaacacattcttttagtttttaatttttatttgacaatatctgggatca----aata----agataaataatttagggatcgatttgatagtgagtga 6421637  T
Q  408 cataattcatggaccatcttgatttttaatgaataattcagggatc 453  Q
    |||||||||   || | ||||||||| |||||||||| || |||||    
T  6421636 cataattcagacactaacttgattttgaatgaataatccaaggatc 6421591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 32055396 - 32055471
Alignment:
Q  1 aaattacaataacatcattttcatccatagtgtttctattaacctctctttcaaatttttatggggtcctaatgaaaag 79  Q
    ||||||||||||||| ||||||   || || |||| | |||||||| |||| ||||||||||||| |||||||||||||    
T  32055396 aaattacaataacattattttc---caaagagtttttcttaacctccctttgaaatttttatgggatcctaatgaaaag 32055471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 266 - 382
Target Start/End: Complemental strand, 32055030 - 32054913
Alignment:
Q  266 atgaagcttcatttcaaacatgcagaatg-taataaataatggttaaatacattct-tttagtttttagtatttatttgacagtatcaaggatcagttta 363  Q
    ||||| |||||| ||||||||||| |||| ||||||||||  |||||| ||||| | |||  ||||| | |||||||||||| |||||  |||||||||     
T  32055030 atgaaacttcatctcaaacatgca-aatgataataaataacagttaaacacattttattttatttttcgcatttatttgacaatatcatagatcagtttg 32054932  T
Q  364 atagctaagataaataata 382  Q
    |||| ||| ||||||||||    
T  32054931 atagttaacataaataata 32054913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 122
Target Start/End: Original strand, 20996403 - 20996495
Alignment:
Q  29 agtgtttctattaacctctctttcaaatttttatggggtcctaatgaaaagaaaagttaacgaggtaactgaaacatgactttatctcatagat 122  Q
    ||||||| | |||||||| ||||| | |||||||||||| |||||||||||||  || |  |||||||||||||  || || ||||||||||||    
T  20996403 agtgtttttcttaacctccctttccagtttttatggggt-ctaatgaaaagaatggtaattgaggtaactgaaatgtgcctctatctcatagat 20996495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 8e-32; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 228 - 453
Target Start/End: Original strand, 53114193 - 53114419
Alignment:
Q  228 cttttgcatgaagaccttgaaaactacattcaacatagatgaagcttcatttcaaacatgcagaatgtaataaataatg-gttaaatacattcttttagt 326  Q
    ||||| ||||||||| ||  | ||||| |||||||| ||||||  ||||||||||||||||| |  |||||||||||   |||||| || ||||||||||    
T  53114193 cttttacatgaagacttttgagactacgttcaacatcgatgaaaattcatttcaaacatgcaaatggtaataaataaacagttaaacacgttcttttagt 53114292  T
Q  327 ttttagtatttatttgacagtatcaaggatcagtttaatagctaagataaataatatagggattgatttgatagtgaataacataattcatggaccatct 426  Q
    |||||| ||||| | |||| ||||| ||||  |||| |||  ||| ||| ||||| || ||||  |||| ||||||| | ||||||||||||||||| ||    
T  53114293 ttttagcatttaatagacaatatcagggatttgtttgataattaaaatagataatctaaggatcaatttcatagtgagtgacataattcatggaccagct 53114392  T
Q  427 tgatttttaatgaataattcagggatc 453  Q
    ||||||||||||||||||| |||||||    
T  53114393 tgatttttaatgaataatttagggatc 53114419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 369 - 490
Target Start/End: Original strand, 6761836 - 6761957
Alignment:
Q  369 taagataaataatatagggattgatttgatagtgaataacataattcatggaccatcttgatttttaatgaataattcagggatcgatctgatgatctag 468  Q
    |||||||||||||  | |||||||||| | ||||| |||||||||||| ||||||  ||| |||||||||||||||| ||||||| || |||   ||||     
T  6761836 taagataaataattcaaggattgatttaacagtgagtaacataattcagggaccaatttggtttttaatgaataatttagggatcaatttgaccgtctaa 6761935  T
Q  469 aaatttgtaatgattttcattt 490  Q
     |||||||||||| ||||||||    
T  6761936 caatttgtaatgactttcattt 6761957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 320 - 379
Target Start/End: Complemental strand, 1723299 - 1723240
Alignment:
Q  320 ttttagtttttagtatttatttgacagtatcaaggatcagtttaatagctaagataaata 379  Q
    ||||||||||||| ||||||||||||||||||||||||| ||| |||  |||||||||||    
T  1723299 ttttagtttttagcatttatttgacagtatcaaggatcaatttgatatataagataaata 1723240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 381
Target Start/End: Original strand, 27647895 - 27647960
Alignment:
Q  316 attcttttagtttttagtatttatttgacagtatcaaggatcagtttaatagctaagataaataat 381  Q
    ||||||||  ||||||| |||||||||||| ||| ||| |||| ||| |||| |||||||||||||    
T  27647895 attctttttatttttagcatttatttgacaatattaagtatcaatttgatagttaagataaataat 27647960  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 426 - 454
Target Start/End: Original strand, 1537962 - 1537990
Alignment:
Q  426 ttgatttttaatgaataattcagggatcg 454  Q
    |||||||||||||||||||||||||||||    
T  1537962 ttgatttttaatgaataattcagggatcg 1537990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 8e-29; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 265 - 490
Target Start/End: Original strand, 32838941 - 32839164
Alignment:
Q  265 gatgaagcttcatttcaaacatgcagaatgtaataaataatggttaaatacattcttttagtttttagtatttatttgacagtatcaaggatcagtttaa 364  Q
    |||||| ||||||||| |||||| | |||| ||||||| | ||||||| ||||||||| | ||||||| ||||||||||| |||||| |||||| ||| |    
T  32838941 gatgaaacttcatttctaacatgaa-aatgcaataaattacggttaaacacattctttcaatttttagcatttatttgacggtatcatggatcaatttga 32839039  T
Q  365 tagctaagataaataatatagggattgatttgatagtgaataacataattcatggaccatcttgatttttaatgaataattcagggatcgatctgatgat 464  Q
    ||| |||||||||||||  || ||   |||| |||| || | ||| |||||| |||||||||||||| ||| |||||||||||||||||||  |||  ||    
T  32839040 tagttaagataaataattcagagaccaattt-atagggagtgacaaaattcaaggaccatcttgattcttagtgaataattcagggatcgacttgacaat 32839138  T
Q  465 ctagaaatttgtaatgattttcattt 490  Q
     ||  |||||||||||| ||||||||    
T  32839139 gtaacaatttgtaatgactttcattt 32839164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 321 - 461
Target Start/End: Complemental strand, 46867624 - 46867485
Alignment:
Q  321 tttagtttttagtatttatttgacagtatcaaggatcagtttaatagctaagataaataatatagggattgatttgatagtgaataacataattcatgga 420  Q
    |||| ||||||  |||||||||| ||||||||||||||  || |||  ||| |||||||||  |  ||| ||||||||||||| | |||||||| | |||    
T  46867624 tttaatttttaacatttatttgatagtatcaaggatcaaattgataaataaaataaataattcatagatcgatttgatagtgagtgacataattta-gga 46867526  T
Q  421 ccatcttgatttttaatgaataattcagggatcgatctgat 461  Q
    ||| ||||||||||||||||||||||| |||||||| ||||    
T  46867525 ccaacttgatttttaatgaataattcaaggatcgatttgat 46867485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 326 - 453
Target Start/End: Original strand, 20447150 - 20447273
Alignment:
Q  326 tttttagtatttatttgacagtatcaaggatcagtttaatagctaagataaataatatagggattgatttgatagtgaataacataattcatggaccatc 425  Q
    ||||||| |||||||||||||   | |||||||  || |||| |||||||||||||  ||||||  |||||||||||| | || |||||||||||||| |    
T  20447150 tttttagcatttatttgacag---cgaggatcaaattgatagataagataaataattcagggatcaatttgatagtgagtgac-taattcatggaccaac 20447245  T
Q  426 ttgatttttaatgaataattcagggatc 453  Q
    |||||||||||||||||| ||| |||||    
T  20447246 ttgatttttaatgaataaatcaaggatc 20447273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 392 - 492
Target Start/End: Original strand, 41982695 - 41982795
Alignment:
Q  392 atttgatagtgaataacataattcatggaccatcttgatttttaatgaataattcagggatcgatctgatgatctagaaatttgtaatgattttcatttt 491  Q
    |||||||||||| | ||||||||||||||||| ||||||||||||||||||||| |  ||||||| ||||  | ||  |||||||||||| ||| |||||    
T  41982695 atttgatagtgagttacataattcatggaccaacttgatttttaatgaataatttaaagatcgatttgatagtgtaacaatttgtaatgacttttatttt 41982794  T
Q  492 a 492  Q
    |    
T  41982795 a 41982795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 314 - 456
Target Start/End: Original strand, 46868792 - 46868933
Alignment:
Q  314 acattcttttagtttttagtatttatttgacagtatcaaggatcagtttaatagctaagataaataatatagggattgatttgatagtgaataacataat 413  Q
    |||||| |||||| ||||| ||||||||||||||    || |||||||| |||| |||||||||||||  |  ||| ||||||| ||||| | ||||| |    
T  46868792 acattcgtttagtatttaggatttatttgacagtgctgag-atcagtttgatagataagataaataattcattgatcgatttgacagtgagtgacatatt 46868890  T
Q  414 tcatggaccatcttgatttttaatgaataattcagggatcgat 456  Q
    |||  ||||| |||||||||||||||||||||||  |||||||    
T  46868891 tcaatgaccaacttgatttttaatgaataattcaatgatcgat 46868933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 266 - 351
Target Start/End: Original strand, 41982602 - 41982687
Alignment:
Q  266 atgaagcttcatttcaaacatgcagaatgtaataaataatggttaaatacattcttttagtttttagtatttatttgacagtatca 351  Q
    ||||| ||| |||||||||||| | || |||||||||||  |||||| |  |||||||||||||||| ||||||||||||||||||    
T  41982602 atgaaacttaatttcaaacatgtaaaaggtaataaataacagttaaacatgttcttttagtttttagcatttatttgacagtatca 41982687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 374 - 449
Target Start/End: Complemental strand, 20445970 - 20445895
Alignment:
Q  374 taaataatatagggattgatttgatagtgaataacataattcatggaccatcttgatttttaatgaataattcagg 449  Q
    |||||||| ||| ||||||||||||||| | | |||||||||| |||||  ||||||||||||| |||||||||||    
T  20445970 taaataatttagagattgatttgatagtcattgacataattcagggacctgcttgatttttaatcaataattcagg 20445895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 317 - 445
Target Start/End: Complemental strand, 30783604 - 30783476
Alignment:
Q  317 ttcttttagtttttagtatttatttgacagtatcaaggatcagtttaatagctaagataaataatatagggattgatttgatagtgaataacataattca 416  Q
    |||||||||||||||  |||||||||||||||||| ||||||  || |||| |  ||||||||||  |||||| ||||| ||| ||| | || |||||||    
T  30783604 ttcttttagtttttaacatttatttgacagtatcatggatcaaattgatagatttgataaataattcagggatcgatttaatattgagtgacgtaattca 30783505  T
Q  417 tggaccatcttgatttttaatgaataatt 445  Q
      ||||| ||| |||||||  ||||||||    
T  30783504 gagaccaacttaatttttatggaataatt 30783476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 328 - 452
Target Start/End: Original strand, 51537963 - 51538087
Alignment:
Q  328 tttagtatttatttgacagtatcaaggatcagtttaatagctaagataaataatatagggattgatttgatagtgaataacataattcatggaccatctt 427  Q
    |||| ||||||||| ||||||| | ||| ||  || |||| |||||||||||||  | |||| ||||||||| ||| | |||||||||| |||||| ||     
T  51537963 tttattatttatttaacagtattagggaccaaattgatagataagataaataattcatggatcgatttgataatgagtgacataattcagggaccaactc 51538062  T
Q  428 gatttttaatgaataattcagggat 452  Q
     || |||||||||||||||| ||||    
T  51538063 aatctttaatgaataattcaaggat 51538087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 369 - 452
Target Start/End: Complemental strand, 51537392 - 51537309
Alignment:
Q  369 taagataaataatatagggattgatttgatagtgaataacataattcatggaccatcttgatttttaatgaataattcagggat 452  Q
    |||||||||||||  || ||| ||||||||||||| | ||||||| || |||| | ||| |||||||||||||| |||||||||    
T  51537392 taagataaataattaagtgatcgatttgatagtgagtgacataatccagggactaacttaatttttaatgaatagttcagggat 51537309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 3e-22; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 314 - 456
Target Start/End: Original strand, 47304117 - 47304259
Alignment:
Q  314 acattcttttagtttttagtatttatttgacagtatcaaggatcagtttaatagctaagataaataatatagggattgatttgatagtgaataacataat 413  Q
    ||||||||||||||||||| || |||||||| ||||||||||| |  || |||  |||||||||| ||  | |||| ||||||| ||||| |  ||||||    
T  47304117 acattcttttagtttttaggatatatttgacggtatcaaggattaaattgatatataagataaatgattcaaggatcgatttgaaagtgagtggcataat 47304216  T
Q  414 tcatggaccatcttgatttttaatgaataattcagggatcgat 456  Q
    ||| |||||| |||||||||||||||||||||  |||||||||    
T  47304217 tcaaggaccaacttgatttttaatgaataattatgggatcgat 47304259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 265 - 445
Target Start/End: Original strand, 5987699 - 5987880
Alignment:
Q  265 gatgaagcttcatttcaaacatgcagaatgtaataaataatggttaaatacattcttttagtt-tttagtatttatttgacagtatcaaggatcagttta 363  Q
    |||||| |||| ||||||||||||| || |||||||||||  || ||| ||||| |||||  | ||||| |||||||||  || |||||| ||||||||     
T  5987699 gatgaaacttcgtttcaaacatgcaaaaggtaataaataacagtcaaacacatttttttaaatgtttagcatttatttggtagcatcaagaatcagtttg 5987798  T
Q  364 atagctaagataaataatatagggattgatttgatagtgaataacataattcatggaccatcttgatttttaatgaataatt 445  Q
    |||| ||||| || ||||  |  ||| | ||||||||  | |||||||||||| || ||||||||||||||||| |||||||    
T  5987799 atagttaagaaaattaattgaaagatcggtttgatagaaactaacataattcagggtccatcttgatttttaattaataatt 5987880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 211 - 304
Target Start/End: Original strand, 9024986 - 9025080
Alignment:
Q  211 ttgaagtggtttg-aacacttttgcatgaagaccttgaaaactacattcaacatagatgaagcttcatttcaaacatgcagaatgtaataaataa 304  Q
    ||||||||||||  |||||||||||||||| |||||| | ||||| || || || |||||| |||||||||||||||||| || |||||||||||    
T  9024986 ttgaagtggttttcaacacttttgcatgaacaccttggagactacgttgaagatggatgaaacttcatttcaaacatgcaaaaagtaataaataa 9025080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 308 - 436
Target Start/End: Complemental strand, 20268456 - 20268323
Alignment:
Q  308 ttaaatacattcttttagtttttagtatttatttgacagtatcaa----ggatcagtttaatagctaa-gataaataatatagggattgatttgatagtg 402  Q
    ||||| ||||||||||||||||||  || |||||||| |||||||    ||||||| || |||| ||| |||||||||| || |||| ||||| ||||||    
T  20268456 ttaaacacattcttttagtttttaacatgtatttgacggtatcaatcacggatcagattgatagataaagataaataatttatggatcgatttaatagtg 20268357  T
Q  403 aataacataattcatggaccatcttgatttttaa 436  Q
    | | |||||||||||  |||| ||||||||||||    
T  20268356 agtgacataattcattaaccaacttgatttttaa 20268323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 419 - 456
Target Start/End: Original strand, 30335102 - 30335139
Alignment:
Q  419 gaccatcttgatttttaatgaataattcagggatcgat 456  Q
    ||||||||||||||||||||||||||||||||||||||    
T  30335102 gaccatcttgatttttaatgaataattcagggatcgat 30335139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 205 - 358
Target Start/End: Complemental strand, 30332603 - 30332450
Alignment:
Q  205 gataatttgaagtggtttg-aacacttttgcatgaagaccttgaaaactacattcaacatagatgaagcttcatttcaaacatgcagaatgtaataaata 303  Q
    ||||||||||||||||||  |||| ||||| |||||||| ||| | | ||| |  ||| | |||||| ||| |||| ||||| ||| ||| ||| |||||    
T  30332603 gataatttgaagtggttttcaacatttttgtatgaagac-ttggacattacgtctaacttggatgaaactttatttgaaacacgcaaaatttaacaaata 30332505  T
Q  304 atggttaaatacattcttttagtttttagtatttatttgacagtatcaaggatca 358  Q
    |   ||||| ||||||||| ||||||||  ||||||||||||||||||| |||||    
T  30332504 acatttaaacacattctttcagtttttaacatttatttgacagtatcaatgatca 30332450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 401 - 443
Target Start/End: Complemental strand, 30332420 - 30332378
Alignment:
Q  401 tgaataacataattcatggaccatcttgatttttaatgaataa 443  Q
    ||||| |||||||||| | ||||||||||||||||||||||||    
T  30332420 tgaatgacataattcaggaaccatcttgatttttaatgaataa 30332378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0426 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0426
Description:

Target: scaffold0426; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 322 - 453
Target Start/End: Complemental strand, 3591 - 3461
Alignment:
Q  322 ttagtttttagtatttatttgacagtatcaaggatcagtttaatagctaagataaataatatagggattgatttgatagtgaataacataattcatggac 421  Q
    ||||||||||  ||||||||||||||||||| |||||  || |||  ||| | ||||||| ||||||| |||||| | |||||| |||||||| | | ||    
T  3591 ttagtttttaccatttatttgacagtatcaatgatcaaattgatatataaaa-aaataatttagggatcgatttggtggtgaatgacataatttaagaac 3493  T
Q  422 catcttgatttttaatgaataattcagggatc 453  Q
    || ||| |||||||||||||||||||| ||||    
T  3492 caactttatttttaatgaataattcagagatc 3461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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