View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2687_low_70 (Length: 291)
Name: NF2687_low_70
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2687_low_70 |
 | |
|
| [»] chr5 (3 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 24049432 - 24049721
Alignment:
| Q |
1 |
tgtaatatggtaggctgatatgctgatgttgatctcaaagcaataaacatacacagttctaaggccattttaacttaaattaatttaatcatattcnnnn |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
24049432 |
tgtaatatggtaggctgatatgctgatgttgatctcaaagcaataaacatacaca-ttctaagaccattctaacttaaattaatttaatcatattctttt |
24049530 |
T |
|
| Q |
101 |
nnnnnaggccattcttgttgtctttactagtaaactttgatgccttggaccaaatatcaaacaagattagaataagagtagatcataaaagatcatatgc |
200 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24049531 |
tttttaggccattcttgttgtctttacttaaaaactttgatgccttggaccaaatatcaaacaagattagaataagagtagatcataaaagatcatatgc |
24049630 |
T |
|
| Q |
201 |
atttctctttggtagtttgtatagactgactcattcaaccgttctcatttacttctgatatgcaaaccacagataccgcctaaatgttcat |
291 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24049631 |
atttctatttggtagtttgtatagactgactcattcaaccgttctcatttacttctgatatgcaaaccacagataccgcctaaatgttcat |
24049721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 24052568 - 24052864
Alignment:
| Q |
1 |
tgtaatatggtaggctgatatgctgatgttgatctcaaagcaataaacatacacagttctaaggccattttaacttaaattaatttaatcatattcnnnn |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |||||||| ||||||||||| ||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
24052568 |
tgtaatatggttggctgatatgctgatgttgatcacaaagcaagaaacatacaca-ttctaagaccattctaacttaaattaatttaatcatattctttt |
24052666 |
T |
|
| Q |
101 |
nnnnnaggccattcttgttgtctttactagtaaactttgatgccttggaccaaatatcaaacaagattagaataagagtagatcataaaagatcatatgc |
200 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24052667 |
tttttaggccattcttgttgtctttacttaaaaactttgatgccttggaccaaatgtcaaacaagattagaataagagtagatcataaaagatcatatgc |
24052766 |
T |
|
| Q |
201 |
atttctctttggtagtttgtatagactgactcattcaaccgttctcatttacttctgatat-------gcaaaccacagataccgcctaaatgttcat |
291 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
24052767 |
atttctatttggtagtttgtatagactgactcattcaaccgttctcatttacttctgatatgcaaacggcaaaccacagataccgcctaaatgttcat |
24052864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 67
Target Start/End: Original strand, 24102163 - 24102203
Alignment:
| Q |
27 |
tgttgatctcaaagcaataaacatacacagttctaaggcca |
67 |
Q |
| |
|
|||||| |||||||||| ||||||||| ||||||||||||| |
|
|
| T |
24102163 |
tgttgaactcaaagcaagaaacatacaaagttctaaggcca |
24102203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 9e-33; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 136 - 263
Target Start/End: Complemental strand, 4261422 - 4261295
Alignment:
| Q |
136 |
tttgatgccttggaccaaatatcaaacaagattagaataagagtagatcataaaagatcatatgcatttctctttggtagtttgtatagactgactcatt |
235 |
Q |
| |
|
|||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||| ||| | |||||| ||||| ||| ||||||||| |
|
|
| T |
4261422 |
tttgatgccttggaccaaatgacaaagaagaatagaataagagtagatcataaaagatcatatgcttttttatttggtcatttgtgcagattgactcatt |
4261323 |
T |
|
| Q |
236 |
caaccgttctcatttacttctgatatgc |
263 |
Q |
| |
|
|||| ||||||||||||| ||||||||| |
|
|
| T |
4261322 |
caactgttctcatttactgctgatatgc |
4261295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 4037883 - 4037943
Alignment:
| Q |
143 |
ccttggaccaaatatcaaacaagattagaataagagtagatcataaaagatcatatgcatt |
203 |
Q |
| |
|
|||| ||| ||||| ||| ||| | ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
4037883 |
cctttgacaaaataacaagcaataatagaatatgagtagatcataaaagatcatatgcatt |
4037943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 190
Target Start/End: Original strand, 4027546 - 4027602
Alignment:
| Q |
134 |
actttgatgccttggaccaaatatcaaacaagattagaataagagtagatcataaaa |
190 |
Q |
| |
|
||||||||||||||||| |||| || |||| | |||||||||||||| |||||||| |
|
|
| T |
4027546 |
actttgatgccttggacaaaatgacagacaaaaatagaataagagtagttcataaaa |
4027602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University