View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2687_low_71 (Length: 290)
Name: NF2687_low_71
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2687_low_71 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
| [»] chr3 (6 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-147; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 16 - 290
Target Start/End: Original strand, 35685948 - 35686222
Alignment:
| Q |
16 |
atgaagtatgttccaatcaaggctattggcagaggagcaaatggtttggtgtgttcatctatcaataaggatactaatgagaaagttgcaattaagaaga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35685948 |
atgaagtatgttccaatcaaggctattggcagaggagcaaatggtttggtgtgttcatctatcaataaggatactaatgagaaagttgcaattaagaaga |
35686047 |
T |
|
| Q |
116 |
ttagcaacatctttgataattgtgttgattcaatgagaagtttaagggagatgatgctgcttagaaatattcgacatgaaaatgtgatcgttttgaaaga |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35686048 |
ttagcaacatctttgataattgtgttgattcaatgaaaactttaagggagatgatgctgcttagaaatattcgacatgaaaatgtgatcgttttgaaaga |
35686147 |
T |
|
| Q |
216 |
tttatgatgccggtgcatagaacaagttttaaggatgtctacttggtttatgaactcatggatacagatcttcat |
290 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35686148 |
tttatgatgccggtacatagaacaagttttaaggatgtctacttggtttatgaactcatggatacagatcttcat |
35686222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 16 - 290
Target Start/End: Original strand, 35680687 - 35680962
Alignment:
| Q |
16 |
atgaagtatgttccaatcaaggctattggcagaggagcaaatggtttggtgtgttcatctatcaataaggatactaatgagaaagttgcaattaagaaga |
115 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| || ||||| ||||||| ||||| |||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
35680687 |
atgaagtatgttccaattaaggctattggcagaggaacatatggtgtggtgtgctcatccatcaataaagatactgatgagaaagttgcaattaagaaga |
35680786 |
T |
|
| Q |
116 |
ttagcaacatctttgataattgtgttgattcaatgagaagtttaagggagatgatgctgcttagaaatattcgacatgaaaatgtgatcgttttgaaaga |
215 |
Q |
| |
|
||||||| || |||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||| || |||||||| | ||||||||| |
|
|
| T |
35680787 |
ttagcaatatatttgataattgtattgattcagtgagaactttaagggagatgatgctgcttagaaatattcgacacgagaatgtgattgctttgaaaga |
35680886 |
T |
|
| Q |
216 |
t-ttatgatgccggtgcatagaacaagttttaaggatgtctacttggtttatgaactcatggatacagatcttcat |
290 |
Q |
| |
|
| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
35680887 |
tgttatgatgccggtacatagaacaagttttaaggatgtctacttggtttatgaactcatggaaacagatcttcat |
35680962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 27 - 290
Target Start/End: Complemental strand, 23669753 - 23669489
Alignment:
| Q |
27 |
tccaatcaaggctattggcagaggagcaaatggtttggtgtgttcatctatcaataaggatactaatgagaaagttgcaattaagaagattagcaacatc |
126 |
Q |
| |
|
|||||||||| |||||||| ||||| || |||| ||||||| ||||| ||||||| |||||| || |||||||| ||||| ||||||||||||||| | |
|
|
| T |
23669753 |
tccaatcaagcctattggccgaggaacatatggcgtggtgtgctcatccatcaatatggataccaacgagaaagtggcaatcaagaagattagcaacgta |
23669654 |
T |
|
| Q |
127 |
tttgataattgtgttgattcaatgagaagtttaagggagatgatgctgcttagaaatattcgacatgaaaatgtgatcgttttgaaagat-ttatgatgc |
225 |
Q |
| |
|
|||||| |||||| |||| || | |||| |||||||||||||| | ||||| || || |||| ||||| |||||||| | |||||||| ||||||| | |
|
|
| T |
23669653 |
tttgatgattgtggtgatgcactcagaactttaagggagatgaagttgcttcgacatgttcggcatgagaatgtgatttctctgaaagatgttatgatac |
23669554 |
T |
|
| Q |
226 |
cggtgcatagaacaagttttaaggatgtctacttggtttatgaactcatggatacagatcttcat |
290 |
Q |
| |
|
| | || ||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||| |
|
|
| T |
23669553 |
cagaccaaagaacaagttttaaggatgtctacttggtctatgaactcatggataaagaccttcat |
23669489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 27 - 290
Target Start/End: Complemental strand, 24042029 - 24041765
Alignment:
| Q |
27 |
tccaatcaaggctattggcagaggagcaaatggtttggtgtgttcatctatcaataaggatactaatgagaaagttgcaattaagaagattagcaacatc |
126 |
Q |
| |
|
|||||||||| |||||||| ||||| || |||| ||||||| ||||| ||||||| |||||| || |||||||| ||||| ||||||||||||||| | |
|
|
| T |
24042029 |
tccaatcaagcctattggccgaggaacatatggcgtggtgtgctcatccatcaatatggataccaacgagaaagtggcaatcaagaagattagcaacgta |
24041930 |
T |
|
| Q |
127 |
tttgataattgtgttgattcaatgagaagtttaagggagatgatgctgcttagaaatattcgacatgaaaatgtgatcgttttgaaagat-ttatgatgc |
225 |
Q |
| |
|
|||||| |||||| |||| || | |||| |||||||||||||| | ||||| || || |||| ||||| |||||||| | |||||||| ||||||| | |
|
|
| T |
24041929 |
tttgatgattgtggtgatgcactcagaactttaagggagatgaagttgcttcgacatgttcggcatgagaatgtgatttctctgaaagatgttatgatac |
24041830 |
T |
|
| Q |
226 |
cggtgcatagaacaagttttaaggatgtctacttggtttatgaactcatggatacagatcttcat |
290 |
Q |
| |
|
| | || ||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||| |
|
|
| T |
24041829 |
cagaccaaagaacaagttttaaggatgtctacttggtctatgaactcatggataaagaccttcat |
24041765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 27 - 290
Target Start/End: Complemental strand, 23685435 - 23685172
Alignment:
| Q |
27 |
tccaatcaaggctattggcagaggagcaaatggtttggtgtgttcatctatcaataaggatactaatgagaaagttgcaattaagaagattagcaacatc |
126 |
Q |
| |
|
|||||||||| |||||||| ||| | || |||| ||||||| ||||| ||||||| |||||| ||||||||||| ||||| |||||||||||||| | |
|
|
| T |
23685435 |
tccaatcaagcctattggccgagcaacatatggcatggtgtgctcatccatcaatatggataccaatgagaaagtggcaatcaagaagattagcaatgta |
23685336 |
T |
|
| Q |
127 |
tttgataattgtgttgattcaatgagaagtttaagggagatgatgctgcttagaaatattcgacatgaaaatgtgatcgttttgaaagat-ttatgatgc |
225 |
Q |
| |
|
|||||| |||||| ||| || |||||| |||||||||||||| | |||||||| || ||| ||||| |||||||| | | |||||||| ||||||| | |
|
|
| T |
23685335 |
tttgatgattgtggtgacgcactgagaactttaagggagatgaagttgcttagacat-gtcggcatgagaatgtgattgctctgaaagatgttatgatac |
23685237 |
T |
|
| Q |
226 |
cggtgcatagaacaagttttaaggatgtctacttggtttatgaactcatggatacagatcttcat |
290 |
Q |
| |
|
||| || |||||||||||||||||| |||||||||| |||||| ||||||||| |||||||||| |
|
|
| T |
23685236 |
cggaccaaagaacaagttttaaggatatctacttggtctatgaattcatggataaagatcttcat |
23685172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 27 - 290
Target Start/End: Complemental strand, 24057672 - 24057409
Alignment:
| Q |
27 |
tccaatcaaggctattggcagaggagcaaatggtttggtgtgttcatctatcaataaggatactaatgagaaagttgcaattaagaagattagcaacatc |
126 |
Q |
| |
|
|||||||||| |||||||| ||| | || |||| ||||||| ||||| ||||||| |||||| ||||||||||| ||||| |||||||||||||| | |
|
|
| T |
24057672 |
tccaatcaagcctattggccgagcaacatatggcatggtgtgctcatccatcaatatggataccaatgagaaagtggcaatcaagaagattagcaatgta |
24057573 |
T |
|
| Q |
127 |
tttgataattgtgttgattcaatgagaagtttaagggagatgatgctgcttagaaatattcgacatgaaaatgtgatcgttttgaaagat-ttatgatgc |
225 |
Q |
| |
|
|||||| |||||| ||| || |||||| |||||||||||||| | |||||||| || ||| ||||| |||||||| | | |||||||| ||||||| | |
|
|
| T |
24057572 |
tttgatgattgtggtgacgcactgagaactttaagggagatgaagttgcttagacat-gtcggcatgagaatgtgattgctctgaaagatgttatgatac |
24057474 |
T |
|
| Q |
226 |
cggtgcatagaacaagttttaaggatgtctacttggtttatgaactcatggatacagatcttcat |
290 |
Q |
| |
|
||| || |||||||||||||||||| |||||||||| |||||| ||||||||| |||||||||| |
|
|
| T |
24057473 |
cggaccaaagaacaagttttaaggatatctacttggtctatgaattcatggataaagatcttcat |
24057409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 62 - 280
Target Start/End: Complemental strand, 23674449 - 23674227
Alignment:
| Q |
62 |
tggtgtgttcatctatcaataaggatactaatgagaaagttgcaattaagaagattagcaacatctttgataattgtgttgattcaatgagaagtttaag |
161 |
Q |
| |
|
||||||| ||| | |||| |||||| || ||||||||||| ||||| |||||||||||||| | |||||||||| ||||| || | |||| |||| | |
|
|
| T |
23674449 |
tggtgtgctcagccatcagtaaggagaccaatgagaaagtcgcaatgaagaagattagcaatgtatttgataatttgattgatgcactaagaactttatg |
23674350 |
T |
|
| Q |
162 |
ggagatgatgctgcttagaaatattcgacatgaaaatgtgatcgttttgaaagat-ttatgatgccggtgcatagaacaa---gttttaaggatgtctac |
257 |
Q |
| |
|
|||||||| ||| |||||| || |||| || || ||||||||| |||||||||| ||||||| | | || | ||||| ||||||||||||||||| |
|
|
| T |
23674349 |
ggagatgaagcttcttagacatgttcggcacgagaatgtgatcactttgaaagatgttatgatactagatcaaaaaacaacatgttttaaggatgtctac |
23674250 |
T |
|
| Q |
258 |
ttggtttatgaactcatggatac |
280 |
Q |
| |
|
||||| |||||||| |||||||| |
|
|
| T |
23674249 |
ttggtctatgaactaatggatac |
23674227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 62 - 280
Target Start/End: Complemental strand, 24046725 - 24046503
Alignment:
| Q |
62 |
tggtgtgttcatctatcaataaggatactaatgagaaagttgcaattaagaagattagcaacatctttgataattgtgttgattcaatgagaagtttaag |
161 |
Q |
| |
|
||||||| ||| | |||| |||||| || ||||||||||| ||||| |||||||||||||| | |||||||||| ||||| || | |||| |||| | |
|
|
| T |
24046725 |
tggtgtgctcagccatcagtaaggagaccaatgagaaagtcgcaatgaagaagattagcaatgtatttgataatttgattgatgcactaagaactttatg |
24046626 |
T |
|
| Q |
162 |
ggagatgatgctgcttagaaatattcgacatgaaaatgtgatcgttttgaaagat-ttatgatgccggtgcatagaacaa---gttttaaggatgtctac |
257 |
Q |
| |
|
|||||||| ||| |||||| || |||| || || ||||||||| |||||||||| ||||||| | | || | ||||| ||||||||||||||||| |
|
|
| T |
24046625 |
ggagatgaagcttcttagacatgttcggcacgagaatgtgatcactttgaaagatgttatgatactagatcaaaaaacaacatgttttaaggatgtctac |
24046526 |
T |
|
| Q |
258 |
ttggtttatgaactcatggatac |
280 |
Q |
| |
|
||||| |||||||| |||||||| |
|
|
| T |
24046525 |
ttggtctatgaactaatggatac |
24046503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University