View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2687_low_72 (Length: 289)
Name: NF2687_low_72
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2687_low_72 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 5 - 289
Target Start/End: Original strand, 28391312 - 28391596
Alignment:
| Q |
5 |
gggacaaatttttcagttattgcagctgatgagaatatggtggaggtttcattttcaagattatggacacattccatgagtggcaaaaatgtccccataa |
104 |
Q |
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| T |
28391312 |
gggacaaatttttcagttattgcagctgatgagaatatggtggaggtttcattttcaagattatggacacattccatgagtggcaaaaatgtccccataa |
28391411 |
T |
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| Q |
105 |
acatagatataaggtggattttgaatgtcttttggttgtaacaatttcaatatataagcttactaatggtgcatgaaacaaaatttatgtatatgttcag |
204 |
Q |
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| T |
28391412 |
acatagatataaggtggattttgaatgtcttttggttgttacaatttcaatatataagcttaccaatggtgcatgaaacaaaatttatgtatatatgcag |
28391511 |
T |
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| Q |
205 |
gtacattttcagaagtggtgattctggattttattcatatgcgatattcaatcgaccgaaaggaatgccaggaattgaggttgat |
289 |
Q |
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| T |
28391512 |
gtacattttcagaagtggtgattctggattttattcatatgcgatattcaatcgaccgaaaggaatgccaggaattgaggttgat |
28391596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 8 - 124
Target Start/End: Original strand, 28383165 - 28383281
Alignment:
| Q |
8 |
acaaatttttcagttattgcagctgatgagaatatggtggaggtttcattttcaagattatggacacattccatgagtggcaaaaatgtccccataaaca |
107 |
Q |
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| T |
28383165 |
acaaacttttcggttatagcagctgatgagaatatggtggaggtttcatttttaagatcatggacatcttcaatgagtggcaaagatgtccctataaaca |
28383264 |
T |
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| Q |
108 |
tagatataaggtggatt |
124 |
Q |
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|||| | |||||||||| |
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| T |
28383265 |
tagacaaaaggtggatt |
28383281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 5 - 124
Target Start/End: Complemental strand, 28411914 - 28411795
Alignment:
| Q |
5 |
gggacaaatttttcagttattgcagctgatgagaatatggtggaggtttcattttcaagattatggacacattccatgagtggcaaaaatgtccccataa |
104 |
Q |
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|||||||| ||||||||||| | |||| ||||||||||||||||||||||||||| ||||| ||||||| |||||||| ||||| | |||| ||||||| |
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| T |
28411914 |
gggacaaaattttcagttatagtagctaatgagaatatggtggaggtttcatttttaagatcatggacatcttccatgactggcatagatgttcccataa |
28411815 |
T |
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| Q |
105 |
acatagatataaggtggatt |
124 |
Q |
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|||| ||||| ||||||||| |
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| T |
28411814 |
acatcgatatcaggtggatt |
28411795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 206 - 289
Target Start/End: Original strand, 28383386 - 28383469
Alignment:
| Q |
206 |
tacattttcagaagtggtgattctggattttattcatatgcgatattcaatcgaccgaaaggaatgccaggaattgaggttgat |
289 |
Q |
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| T |
28383386 |
tacattttcagaagtggtgattcaggattttattcatatgcaatatttgatcgccctgaaggaatgccagcagttgaggttgat |
28383469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 289
Target Start/End: Complemental strand, 28411686 - 28411603
Alignment:
| Q |
206 |
tacattttcagaagtggtgattctggattttattcatatgcgatattcaatcgaccgaaaggaatgccaggaattgaggttgat |
289 |
Q |
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|||||||||||||| |||||||| |||||||||||||| || ||||| |||| | |||||||||||| | || |||||||| |
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| T |
28411686 |
tacattttcagaagaggtgattccggattttattcatacgcaatatttgatcgccatgaaggaatgccagcagttaaggttgat |
28411603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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