View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2687_low_73 (Length: 282)

Name: NF2687_low_73
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2687_low_73
NF2687_low_73
[»] chr3 (2 HSPs)
chr3 (48-260)||(20593126-20593351)
chr3 (19-191)||(20605978-20606150)
[»] chr6 (2 HSPs)
chr6 (30-178)||(17537657-17537805)
chr6 (19-269)||(5155248-5155497)
[»] chr7 (2 HSPs)
chr7 (19-106)||(24176405-24176493)
chr7 (74-107)||(730150-730183)
[»] chr2 (3 HSPs)
chr2 (19-106)||(24509746-24509834)
chr2 (19-106)||(32152777-32152865)
chr2 (31-85)||(23739826-23739880)
[»] chr4 (4 HSPs)
chr4 (74-107)||(31229948-31229981)
chr4 (74-107)||(31234757-31234790)
chr4 (74-107)||(31234881-31234914)
chr4 (202-236)||(31234615-31234649)


Alignment Details
Target: chr3 (Bit Score: 146; Significance: 6e-77; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 48 - 260
Target Start/End: Original strand, 20593126 - 20593351
Alignment:
Q  48 attgcatatagttagttagagatctcagcttctatataagctactcttgtaaccgttttcatcaattaattaatacattctctctcttctttttctagag 147  Q
    ||||||| ||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  20593126 attgcatgtagttagttagagatcagagcttctatataagctactcttgtaactgttttcatcaattaatcaatacattctctctcttctttttctagag 20593225  T
Q  148 cttcaagctttatccatggtgatttccatggtggtgtcaatcttagatggttca-------------cttgctctgcttccgcacaatgaagatagaacg 234  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||  |             |||||||||||||||||||||||||||||||||    
T  20593226 cttcaagctttatccatggtgatttccatggtgatgtcaatcttagatggtataagagcaagtgaatcttgctctgcttccgcacaatgaagatagaacg 20593325  T
Q  235 ttcttttgttcgtcttcctcttctat 260  Q
    || |||||||||||||||||||||||    
T  20593326 ttgttttgttcgtcttcctcttctat 20593351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 19 - 191
Target Start/End: Original strand, 20605978 - 20606150
Alignment:
Q  19 aatttcccttacatttacatttcatttgtattgcatatagttagttagagatctcagcttctatataagctactcttgtaaccgttttcatcaattaatt 118  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||     
T  20605978 aatttcacttacatttacatttcatttgtattgcatgtagttagttacagatctcagcttctatataagctactcttgtaaccgttttcatcaattaatc 20606077  T
Q  119 aatacattctctctcttctttttctagagcttcaagctttatccatggtgatttccatggtggtgtcaatctt 191  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  20606078 aatacattctttctcttctttttctagagcttcaagctttatccatggtgatttccatggcggtttcaatctt 20606150  T

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Target: chr6 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 30 - 178
Target Start/End: Complemental strand, 17537805 - 17537657
Alignment:
Q  30 catttacatttcatttgtattgcatatagttagttagagatctcagcttctatataagctactcttgtaaccgttttcatcaattaattaataca-ttct 128  Q
    ||||||||||||||||||| ||||| ||||||||||||||||| ||||| |||||||| |||||||||||||||||||  |||||||| |||||| ||||    
T  17537805 catttacatttcatttgtagtgcatctagttagttagagatcttagcttatatataagatactcttgtaaccgttttccacaattaatcaatacatttct 17537706  T
Q  129 ctctcttctttttctagagcttcaagctttatccatggtgatttccatgg 178  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||    
T  17537705 ctctcctc-ttttctagagcttcaagctttatccatggtgatttccatgg 17537657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 19 - 269
Target Start/End: Complemental strand, 5155497 - 5155248
Alignment:
Q  19 aatttcccttacatttacatttcatttgtattgcatatagttagttagagatctcagcttctatataagctactcttgtaaccgttttcatcaattaatt 118  Q
    |||||| ||| ||| ||||||||||||||||||||| |||||||||||||  || ||||||||||||||||||||||||||||||||||||||||| ||     
T  5155497 aatttcactttcatatacatttcatttgtattgcatgtagttagttagaggacttagcttctatataagctactcttgtaaccgttttcatcaatt-atc 5155399  T
Q  119 aatacattctctctcttctttttctagagcttcaagctttatccatggtgatttccatggtggtgtcaatcttagatggt-tca------------cttg 205  Q
    ||||||             ||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||| |||            ||||    
T  5155398 aataca-------------ttttctagagcttcaagctttatccatggtggtttccatggcggtttcaatcttagatggtatcagagcaagcgcatcttg 5155312  T
Q  206 ctctgcttccgcacaatgaagatagaacgttcttttgttcgtcttcctcttctattcctcttct 269  Q
    |||||||||||||||||||||||| || ||| |||||||| |||||| ||||||||| ||||||    
T  5155311 ctctgcttccgcacaatgaagataaaatgttgttttgttcatcttccccttctattcttcttct 5155248  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 24176493 - 24176405
Alignment:
Q  19 aatttcccttacatttacatttcatttgtattgcatatagttagttagagatctcagcttctatata-agctactcttgtaaccgtttt 106  Q
    |||||| ||| |||||||||||||||| | |||||| ||||||||||||  | |||||||||||||| ||||| || ||||||||||||    
T  24176493 aatttcactttcatttacatttcatttatgttgcatgtagttagttagaagtttcagcttctatatatagctattcctgtaaccgtttt 24176405  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 107
Target Start/End: Complemental strand, 730183 - 730150
Alignment:
Q  74 agcttctatataagctactcttgtaaccgttttc 107  Q
    |||||||||||||||||||| |||||||||||||    
T  730183 agcttctatataagctactcctgtaaccgttttc 730150  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 106
Target Start/End: Original strand, 24509746 - 24509834
Alignment:
Q  19 aatttcccttacatttacatttcatttgtattgcatatagttagttagagatctcagcttctatata-agctactcttgtaaccgtttt 106  Q
    |||||| ||| |||||||||||||||| | |||||| ||||||||||||  | |||||||||||||| ||||| || ||||||| ||||    
T  24509746 aatttcactttcatttacatttcatttatgttgcatgtagttagttagaagtttcagcttctatatatagctattcctgtaaccatttt 24509834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 32152865 - 32152777
Alignment:
Q  19 aatttcccttacatttacatttcatttgtattgcatatagttagttagagatctcagcttctatata-agctactcttgtaaccgtttt 106  Q
    |||||| ||| |||||||||||||||| | |||||| ||||||||||||  | |||||||||||||| ||||| |  ||||||||||||    
T  32152865 aatttcactttcatttacatttcatttatgttgcatgtagttagttagaagtttcagcttctatatatagctattactgtaaccgtttt 32152777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 85
Target Start/End: Original strand, 23739826 - 23739880
Alignment:
Q  31 atttacatttcatttgtattgcatatagttagttagagatctcagcttctatata 85  Q
    ||||||||||||||| | |||||| ||||||||||||  | ||||||||||||||    
T  23739826 atttacatttcatttatgttgcatgtagttagttagaagtttcagcttctatata 23739880  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 74 - 107
Target Start/End: Complemental strand, 31229981 - 31229948
Alignment:
Q  74 agcttctatataagctactcttgtaaccgttttc 107  Q
    ||||||||||||||||||||||||||||||||||    
T  31229981 agcttctatataagctactcttgtaaccgttttc 31229948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 74 - 107
Target Start/End: Complemental strand, 31234790 - 31234757
Alignment:
Q  74 agcttctatataagctactcttgtaaccgttttc 107  Q
    ||||||||||||||||||||||||||||||||||    
T  31234790 agcttctatataagctactcttgtaaccgttttc 31234757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 74 - 107
Target Start/End: Complemental strand, 31234914 - 31234881
Alignment:
Q  74 agcttctatataagctactcttgtaaccgttttc 107  Q
    ||||||||||||||||||||||||||||||||||    
T  31234914 agcttctatataagctactcttgtaaccgttttc 31234881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 236
Target Start/End: Complemental strand, 31234649 - 31234615
Alignment:
Q  202 cttgctctgcttccgcacaatgaagatagaacgtt 236  Q
    ||||||||||||||||||||||||||| |||||||    
T  31234649 cttgctctgcttccgcacaatgaagattgaacgtt 31234615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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