View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2687_low_75 (Length: 272)

Name: NF2687_low_75
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2687_low_75
NF2687_low_75
[»] chr5 (4 HSPs)
chr5 (1-255)||(2817850-2818104)
chr5 (51-95)||(11615454-11615498)
chr5 (53-107)||(4855630-4855686)
chr5 (62-107)||(20982226-20982273)
[»] chr8 (4 HSPs)
chr8 (62-98)||(39561632-39561668)
chr8 (52-95)||(42597347-42597390)
chr8 (52-107)||(7026663-7026720)
chr8 (52-90)||(37152971-37153009)
[»] chr2 (2 HSPs)
chr2 (52-109)||(18962119-18962178)
chr2 (52-107)||(3673739-3673796)
[»] scaffold0103 (1 HSPs)
scaffold0103 (52-95)||(51514-51557)
[»] chr6 (2 HSPs)
chr6 (52-95)||(22742312-22742355)
chr6 (52-107)||(5551395-5551451)
[»] chr4 (5 HSPs)
chr4 (52-95)||(42321960-42322003)
chr4 (52-107)||(21157700-21157757)
chr4 (52-94)||(35411093-35411135)
chr4 (52-97)||(17884012-17884057)
chr4 (49-107)||(41088316-41088376)
[»] chr3 (2 HSPs)
chr3 (62-109)||(3757978-3758027)
chr3 (64-104)||(10526304-10526344)
[»] chr1 (2 HSPs)
chr1 (52-94)||(15687154-15687196)
chr1 (52-92)||(45990139-45990179)
[»] chr7 (2 HSPs)
chr7 (52-97)||(26935631-26935676)
chr7 (62-107)||(46213735-46213782)


Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 2817850 - 2818104
Alignment:
Q  1 atgaacctaaaatgttttcagcttatttcatatgttctccaaagagcttataaacaattttactttattttatactttgttataaaaatagcttacataa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2817850 atgaacctaaaatgttttcagcttatttcatatgttctccaaagagcttataaacaattttactttattttatactttgttataaaaatagcttacataa 2817949  T
Q  101 gcacttacaagtatgctattaaccgcaaaataagttgtttataaaaaataacttgaaagtgttatccatatttccacagattgtagttttccacttcaga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2817950 gcacttacaagtatgctattaaccgcaaaataagttgtttataaaaaataacttgaaagtgttatccatatttccacagattgtagttttccacttcaga 2818049  T
Q  201 tttggtaccacttatcctgtgaaactttatatcctgaattttttcagcagcaatt 255  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2818050 tttggtaccacttatcctgtgaaactttatatcctgaattttttcagcagcaatt 2818104  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 95
Target Start/End: Complemental strand, 11615498 - 11615454
Alignment:
Q  51 taaacaattttactttattttatactttgttataaaaatagctta 95  Q
    |||||||||| ||||||||||||  ||||||||||||||||||||    
T  11615498 taaacaatttgactttattttatcttttgttataaaaatagctta 11615454  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 53 - 107
Target Start/End: Complemental strand, 4855686 - 4855630
Alignment:
Q  53 aacaattttactttattttatactttgttataaaaatagct--tacataagcactta 107  Q
    |||||||| ||||||||||||  ||||||||||||||||||  |||||||| |||||    
T  4855686 aacaatttaactttattttattttttgttataaaaatagctaatacataagtactta 4855630  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 107
Target Start/End: Original strand, 20982226 - 20982273
Alignment:
Q  62 actttattttatactttgttataaaaatagct--tacataagcactta 107  Q
    |||||||||||| |||||||||| ||||||||  ||||||||||||||    
T  20982226 actttattttatcctttgttatagaaatagcttatacataagcactta 20982273  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 98
Target Start/End: Original strand, 39561632 - 39561668
Alignment:
Q  62 actttattttatactttgttataaaaatagcttacat 98  Q
    ||||||||||||||||||||||| |||||||||||||    
T  39561632 actttattttatactttgttatagaaatagcttacat 39561668  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 95
Target Start/End: Complemental strand, 42597390 - 42597347
Alignment:
Q  52 aaacaattttactttattttatactttgttataaaaatagctta 95  Q
    ||||||||||||||||||||||  ||||||||| ||||||||||    
T  42597390 aaacaattttactttattttatcttttgttatagaaatagctta 42597347  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 107
Target Start/End: Complemental strand, 7026720 - 7026663
Alignment:
Q  52 aaacaattttactttattttatactttgttataaaaatagctta--cataagcactta 107  Q
    ||||||||||||||||||||||  |||||||||| | |||||||  ||||||||||||    
T  7026720 aaacaattttactttattttatcttttgttataacagtagcttatgcataagcactta 7026663  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 90
Target Start/End: Original strand, 37152971 - 37153009
Alignment:
Q  52 aaacaattttactttattttatactttgttataaaaata 90  Q
    ||||||||| ||||||||||||||||||||||| |||||    
T  37152971 aaacaatttaactttattttatactttgttatagaaata 37153009  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 109
Target Start/End: Original strand, 18962119 - 18962178
Alignment:
Q  52 aaacaattttactttattttatactttgttataaaaatagct--tacataagcacttaca 109  Q
    ||||| ||| ||||||||||||  ||||||||||||||||||  ||||||||||||||||    
T  18962119 aaacagtttaactttattttatcttttgttataaaaatagctaatacataagcacttaca 18962178  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 107
Target Start/End: Complemental strand, 3673796 - 3673739
Alignment:
Q  52 aaacaattttactttattttatactttgttataaaaatagct--tacataagcactta 107  Q
    ||||||||| ||||||||||||| ||||||||| ||||| ||  ||||||||||||||    
T  3673796 aaacaatttaactttattttatattttgttatagaaataactaatacataagcactta 3673739  T

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Target: scaffold0103 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 95
Target Start/End: Complemental strand, 51557 - 51514
Alignment:
Q  52 aaacaattttactttattttatactttgttataaaaatagctta 95  Q
    ||||||||| ||||||||||||| ||||||||||||||| ||||    
T  51557 aaacaatttaactttattttatattttgttataaaaataactta 51514  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 95
Target Start/End: Complemental strand, 22742355 - 22742312
Alignment:
Q  52 aaacaattttactttattttatactttgttataaaaatagctta 95  Q
    ||||||||| |||||||||||| |||||||||| ||||||||||    
T  22742355 aaacaatttgactttattttatcctttgttatacaaatagctta 22742312  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 107
Target Start/End: Complemental strand, 5551451 - 5551395
Alignment:
Q  52 aaacaattttactttattttatactttgttataaaaatagct-tacataagcactta 107  Q
    ||||||||| ||||||||||||  ||||||||| |||||||| ||||||| ||||||    
T  5551451 aaacaatttgactttattttatcttttgttatataaatagctatacataatcactta 5551395  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 95
Target Start/End: Original strand, 42321960 - 42322003
Alignment:
Q  52 aaacaattttactttattttatactttgttataaaaatagctta 95  Q
    ||||||||| ||||||||||||  ||||||||||||||||||||    
T  42321960 aaacaatttgactttattttatcatttgttataaaaatagctta 42322003  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 107
Target Start/End: Complemental strand, 21157757 - 21157700
Alignment:
Q  52 aaacaattttactttattttatactttgttataaaaatagct--tacataagcactta 107  Q
    ||||| ||| |||||| ||||||||||||||| |||||||||  ||||||||||||||    
T  21157757 aaacagtttgactttagtttatactttgttatcaaaatagctgatacataagcactta 21157700  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 94
Target Start/End: Original strand, 35411093 - 35411135
Alignment:
Q  52 aaacaattttactttattttatactttgttataaaaatagctt 94  Q
    ||||||||| |||| |||||||| |||||||||||||||||||    
T  35411093 aaacaatttgacttaattttatagtttgttataaaaatagctt 35411135  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 52 - 97
Target Start/End: Complemental strand, 17884057 - 17884012
Alignment:
Q  52 aaacaattttactttattttatactttgttataaaaatagcttaca 97  Q
    ||||||||| ||||||||||||  ||||||||| ||||||||||||    
T  17884057 aaacaatttaactttattttatcttttgttatagaaatagcttaca 17884012  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 107
Target Start/End: Complemental strand, 41088376 - 41088316
Alignment:
Q  49 tataaacaattttactttattttatactttgttataaaaatagct--tacataagcactta 107  Q
    |||||||||||||||||||||||||  |||||| | ||||||| |  ||||||||||||||    
T  41088376 tataaacaattttactttattttatcttttgttgtgaaaatagtttatacataagcactta 41088316  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 109
Target Start/End: Complemental strand, 3758027 - 3757978
Alignment:
Q  62 actttattttatactttgttataaaaatagct--tacataagcacttaca 109  Q
    ||||||||||||| ||||||| ||||||||||  ||||||||||||||||    
T  3758027 actttattttatattttgttacaaaaatagcttatacataagcacttaca 3757978  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 104
Target Start/End: Original strand, 10526304 - 10526344
Alignment:
Q  64 tttattttatactttgttataaaaatagcttacataagcac 104  Q
    |||||||| || ||||||||| |||||||||||||||||||    
T  10526304 tttattttttattttgttatagaaatagcttacataagcac 10526344  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 94
Target Start/End: Original strand, 15687154 - 15687196
Alignment:
Q  52 aaacaattttactttattttatactttgttataaaaatagctt 94  Q
    ||||||||| ||||||||||||| ||||||||| |||||||||    
T  15687154 aaacaatttaactttattttatattttgttatagaaatagctt 15687196  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 92
Target Start/End: Original strand, 45990139 - 45990179
Alignment:
Q  52 aaacaattttactttattttatactttgttataaaaatagc 92  Q
    ||||||||||||||||||||||  |||| ||||||||||||    
T  45990139 aaacaattttactttattttatcttttgatataaaaatagc 45990179  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 52 - 97
Target Start/End: Original strand, 26935631 - 26935676
Alignment:
Q  52 aaacaattttactttattttatactttgttataaaaatagcttaca 97  Q
    ||||||||| || |||||||||  ||||||||||||||||||||||    
T  26935631 aaacaatttaaccttattttatcatttgttataaaaatagcttaca 26935676  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 107
Target Start/End: Complemental strand, 46213782 - 46213735
Alignment:
Q  62 actttattttatactttgttataaaaatagc--ttacataagcactta 107  Q
    ||||||||||||| ||||||||| |||||||  |||||||||||||||    
T  46213782 actttattttatattttgttatagaaatagcttttacataagcactta 46213735  T

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