View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2687_low_76 (Length: 270)
Name: NF2687_low_76
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2687_low_76 |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 1316812 - 1317065
Alignment:
| Q |
1 |
catatttcatgagtgatgccattgaagatatatctaaagcatgtggagctttggaaatgaaggaagcagctcctccggttgcaggtatcacttatctgaa |
100 |
Q |
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| T |
1316812 |
catatttcatgagtgatgccattgaagatatatctaaagcatgtgcagctttggaaatgaaggaagcagctcctccggttgcaggtatcacttatctgaa |
1316911 |
T |
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| Q |
101 |
tctgaaagttattgtgatctgttaatattctgagtgtttgtctttctttttgttctagttgctgctttgcgaacactgcaaccagtgattataaggatta |
200 |
Q |
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| T |
1316912 |
tctgaaagttattgtgatctgttaattttctgagtgtttgtctttcttttcgttctagttgctgctttgcgaacactgcaaccagagattataaggatta |
1317011 |
T |
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| Q |
201 |
ttgtttcaattcttgaaaggaacaaatccccaaatcaatctcttacctgccttt |
254 |
Q |
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| T |
1317012 |
ttgtttcaattcttgaaagaaacaaatccccaaatcaatctcttacctgccttt |
1317065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 176; Significance: 7e-95; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 8 - 199
Target Start/End: Original strand, 43487057 - 43487248
Alignment:
| Q |
8 |
catgagtgatgccattgaagatatatctaaagcatgtggagctttggaaatgaaggaagcagctcctccggttgcaggtatcacttatctgaatctgaaa |
107 |
Q |
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| T |
43487057 |
catgagtgatgccattgaagatatatctaaagcatgtgcagctttggaaatgaaggaagcagctcctccggttgcaggtatcaattatctgaatctgaaa |
43487156 |
T |
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| Q |
108 |
gttattgtgatctgttaatattctgagtgtttgtctttctttttgttctagttgctgctttgcgaacactgcaaccagtgattataaggatt |
199 |
Q |
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| T |
43487157 |
gttattgtgatctgttaatattctgagtgtttgtctttctttttgttctagttgctgctttacgaacactgcaaccagagattataaggatt |
43487248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 198 - 254
Target Start/End: Original strand, 43487316 - 43487373
Alignment:
| Q |
198 |
ttattgtttcaattcttgaaaggaacaaatccccaaat-caatctcttacctgccttt |
254 |
Q |
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| T |
43487316 |
ttattgtttcaattcttgaaaggaacaaatccccatatgcaatctcttacctgccttt |
43487373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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