View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2687_low_80 (Length: 261)
Name: NF2687_low_80
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2687_low_80 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 42686908 - 42687124
Alignment:
| Q |
1 |
cattatctcacttttgtcgatggctaagatgctccatatcgctacctctgcattcgggtatacagtgttgatacgaatccgcaagtatactgttttttca |
100 |
Q |
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| T |
42686908 |
cattatctcacttttgtcgatggctaagatgctccatatcgctacctctgcattcgggtatacagtgttgatacgaatccgcaagtatactgttttttca |
42687007 |
T |
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| Q |
101 |
agtagtaaaaagataatcgttcctcagagggtttatatgaataataatcttgtttttaattctgattagcggaaaagattaagttggttgagtttataat |
200 |
Q |
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| T |
42687008 |
agtagtaaaaagattatcgttcctcagagggtttatatgaataataatcttgtttttaattctgattagcggaaaagattaagttggttgagtttataat |
42687107 |
T |
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| Q |
201 |
tgcttggttaaaactca |
217 |
Q |
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| T |
42687108 |
tgcttggttaaaactca |
42687124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 147 - 190
Target Start/End: Complemental strand, 11243108 - 11243065
Alignment:
| Q |
147 |
atcttgtttttaattctgattagcggaaaagattaagttggttg |
190 |
Q |
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| T |
11243108 |
atcttgtttttaattatgattagctgaaaagatcaagttggttg |
11243065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 213
Target Start/End: Original strand, 16998538 - 16998597
Alignment:
| Q |
154 |
ttttaattctgattagcggaaaagattaagttggttgagtttataattgcttggttaaaa |
213 |
Q |
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| T |
16998538 |
ttttagttttgattagctgaaaaaattaagttggttggttttataaatgcttggttaaaa |
16998597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 68 - 213
Target Start/End: Original strand, 12726488 - 12726633
Alignment:
| Q |
68 |
ttgatacgaatccgcaagtatactgttttttcaagtagtaaaaagataatcgttcctcagagggtttatatg-aataat-aatcttgtttttaattctga |
165 |
Q |
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|||||||||||||||||||||| ||||| || |||||| ||||||| ||||||| | | || | ||||||| ||| || |||||| ||||||||| ||| |
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| T |
12726488 |
ttgatacgaatccgcaagtatatggttttatcgagtagtgaaaagattatcgttcat-aaagag-ttatatgtaattatcaatcttatttttaattgtga |
12726585 |
T |
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| Q |
166 |
ttagcggaaaagattaagttggttgagtttataattgcttggttaaaa |
213 |
Q |
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|| || |||||||| || ||||||| |||||||| | || ||||||| |
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| T |
12726586 |
ttggctgaaaagatcaaattggttggttttataatcgttttgttaaaa |
12726633 |
T |
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