View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2687_low_83 (Length: 250)

Name: NF2687_low_83
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2687_low_83
NF2687_low_83
[»] chr8 (5 HSPs)
chr8 (123-235)||(15004547-15004659)
chr8 (123-235)||(22354239-22354351)
chr8 (123-235)||(22342579-22342691)
chr8 (14-60)||(15004714-15004760)
chr8 (14-60)||(22342478-22342524)
[»] chr3 (4 HSPs)
chr3 (123-235)||(44270180-44270292)
chr3 (123-235)||(1672198-1672310)
chr3 (15-60)||(1668845-1668890)
chr3 (15-60)||(44273591-44273636)
[»] chr4 (2 HSPs)
chr4 (123-235)||(26071392-26071504)
chr4 (15-60)||(26074818-26074863)
[»] chr7 (3 HSPs)
chr7 (123-235)||(10461197-10461310)
chr7 (15-60)||(10461097-10461142)
chr7 (14-60)||(13071671-13071717)


Alignment Details
Target: chr8 (Bit Score: 109; Significance: 6e-55; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 123 - 235
Target Start/End: Complemental strand, 15004659 - 15004547
Alignment:
Q  123 ttggtggagatggagaatataaacgatgaagtcaggactcttttgaattgtggggaatgttaatgatgacatcaagaatcttttcttgttatgttttggg 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  15004659 ttggtggagatggagaatataaacgatgaagtcaggactcttttgaattgtggggaatgttaatgatgacatcaagactcttttcttgttatgttttggg 15004560  T
Q  223 ctcttttttgtat 235  Q
    |||||||||||||    
T  15004559 ctcttttttgtat 15004547  T

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Target: chr8; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 123 - 235
Target Start/End: Original strand, 22354239 - 22354351
Alignment:
Q  123 ttggtggagatggagaatataaacgatgaagtcaggactcttttgaattgtggggaatgttaatgatgacatcaagaatcttttcttgttatgttttggg 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  22354239 ttggtggagatggagaatataaacgatgaagtcaggactcttttgaattgtggggaatgttaatgatgacatcaagactcttttcttgttatgttttggg 22354338  T
Q  223 ctcttttttgtat 235  Q
    |||||||||||||    
T  22354339 ctcttttttgtat 22354351  T

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Target: chr8; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 123 - 235
Target Start/End: Original strand, 22342579 - 22342691
Alignment:
Q  123 ttggtggagatggagaatataaacgatgaagtcaggactcttttgaattgtggggaatgttaatgatgacatcaagaatcttttcttgttatgttttggg 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  22342579 ttggtggagatggagaatataaacgatgaagtcaggactcttttgaattgtggggaattttaatgatgacatcaagactcttttcttgttatgttttggg 22342678  T
Q  223 ctcttttttgtat 235  Q
    |||||||||||||    
T  22342679 ctcttttttgtat 22342691  T

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Target: chr8; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 15004760 - 15004714
Alignment:
Q  14 cgggttgggtcgggtaaatgggtgaatgtggttttaaaaattgatat 60  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  15004760 cgggttgggtcgggtaaatgggtgaatgtggttttaaaaattgatat 15004714  T

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Target: chr8; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 22342478 - 22342524
Alignment:
Q  14 cgggttgggtcgggtaaatgggtgaatgtggttttaaaaattgatat 60  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  22342478 cgggttgggtcgggtaaatgggtgaatgtggttttaaaaattgatat 22342524  T

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Target: chr3 (Bit Score: 109; Significance: 6e-55; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 123 - 235
Target Start/End: Complemental strand, 44270292 - 44270180
Alignment:
Q  123 ttggtggagatggagaatataaacgatgaagtcaggactcttttgaattgtggggaatgttaatgatgacatcaagaatcttttcttgttatgttttggg 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  44270292 ttggtggagatggagaatataaacgatgaagtcaggactcttttgaattgtggggaatgttaatgatgacatcaagactcttttcttgttatgttttggg 44270193  T
Q  223 ctcttttttgtat 235  Q
    |||||||||||||    
T  44270192 ctcttttttgtat 44270180  T

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Target: chr3; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 123 - 235
Target Start/End: Original strand, 1672198 - 1672310
Alignment:
Q  123 ttggtggagatggagaatataaacgatgaagtcaggactcttttgaattgtggggaatgttaatgatgacatcaagaatcttttcttgttatgttttggg 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  1672198 ttggtggagatggagaatataaacgatgaagtcaggactcttttgaattgtggggaatgttaatgatgacatcaagactcgtttcttgttatgttttggg 1672297  T
Q  223 ctcttttttgtat 235  Q
    |||||||||||||    
T  1672298 ctcttttttgtat 1672310  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 1668845 - 1668890
Alignment:
Q  15 gggttgggtcgggtaaatgggtgaatgtggttttaaaaattgatat 60  Q
    |||||||| |||||||||||||||||||||||||||||||||||||    
T  1668845 gggttgggccgggtaaatgggtgaatgtggttttaaaaattgatat 1668890  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 44273636 - 44273591
Alignment:
Q  15 gggttgggtcgggtaaatgggtgaatgtggttttaaaaattgatat 60  Q
    |||||||| |||||||||||||||||||||||||||||||||||||    
T  44273636 gggttgggccgggtaaatgggtgaatgtggttttaaaaattgatat 44273591  T

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Target: chr4 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 123 - 235
Target Start/End: Complemental strand, 26071504 - 26071392
Alignment:
Q  123 ttggtggagatggagaatataaacgatgaagtcaggactcttttgaattgtggggaatgttaatgatgacatcaagaatcttttcttgttatgttttggg 222  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  26071504 ttggtggagatggagaatataaacgatgaagtcaagactcttttgaattgtggggaatgttaatgatgacatcaagactcttttcttgttatgttttggg 26071405  T
Q  223 ctcttttttgtat 235  Q
    |||||||||||||    
T  26071404 ctcttttttgtat 26071392  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 26074863 - 26074818
Alignment:
Q  15 gggttgggtcgggtaaatgggtgaatgtggttttaaaaattgatat 60  Q
    |||||||| |||||||||||||||||||||||||||||||||||||    
T  26074863 gggttgggccgggtaaatgggtgaatgtggttttaaaaattgatat 26074818  T

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Target: chr7 (Bit Score: 98; Significance: 2e-48; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 123 - 235
Target Start/End: Original strand, 10461197 - 10461310
Alignment:
Q  123 ttggtggagatggagaatataaacgatgaagtcaggactcttttgaattgtggggaatgttaatgatgacatcaagaatc-ttttcttgttatgttttgg 221  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  10461197 ttggtggagatggagaatataaacgatgaagtcatgactcttttgaattgtggggaatgttaatgatgacatcaagactctttttcttgttatgttttgg 10461296  T
Q  222 gctcttttttgtat 235  Q
    ||||||||||||||    
T  10461297 gctcttttttgtat 10461310  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 10461097 - 10461142
Alignment:
Q  15 gggttgggtcgggtaaatgggtgaatgtggttttaaaaattgatat 60  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||    
T  10461097 gggttgggtcgggtaaatgggtgcatgtggttttaaaaattgatat 10461142  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 13071717 - 13071671
Alignment:
Q  14 cgggttgggtcgggtaaatgggtgaatgtggttttaaaaattgatat 60  Q
    ||||||||  ||||||||||||||||||||||||||||||| |||||    
T  13071717 cgggttggaccgggtaaatgggtgaatgtggttttaaaaatcgatat 13071671  T

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