View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2687_low_9 (Length: 637)
Name: NF2687_low_9
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2687_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 29 - 528
Target Start/End: Original strand, 29840591 - 29841091
Alignment:
| Q |
29 |
gatgtgcgtgatccaatgtataacgtgtatattaggatgtatggatttgattaatcaagtggttattgaatgtggtttaacgatgagtgatttaattgaa |
128 |
Q |
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| T |
29840591 |
gatgtgcgtgatccaatgtataaggtgtatattaggatgtatggatttgattaatctagtggttattaaatatggttcaacattgagggatttaattgaa |
29840690 |
T |
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| Q |
129 |
acctcacctttgaatgccacaattttcaattcaaaattattacaaaaatcttaattgataggttagaaattgtccgcatgcacattattttagctaacca |
228 |
Q |
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| T |
29840691 |
acgtaaccttagaattccataatttacagttcaaaattattactaaaatcttagttgataggctaggaattgtccgcatgcgcattattttagttaacca |
29840790 |
T |
|
| Q |
229 |
gagaggttttgttcgagttcgttatatatttgattgtgggattgtggtttctgaagttattaacttgttagaatagaatcagtttggtggtaatatggct |
328 |
Q |
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| T |
29840791 |
gagaggttttgttcgagttcgtaatatctcttattgtgggattgtggcttctgaagctattaaattgttagaatagaagcaattttatggtaatatggct |
29840890 |
T |
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| Q |
329 |
atacaagttgacattaaaaaagcttttgattctttatcttggatgtttttgttattagtattgaaaaga-nnnnnnnnaaacatgtattttgggattgga |
427 |
Q |
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| T |
29840891 |
atacaggttgacattaaaaaagcttttgatactttatcgtggatgtttttgttattagtgctgaaaagatttatttttaaacatgtatttggtgattgga |
29840990 |
T |
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| Q |
428 |
tatcttctattttgcatttttcccgactgtatattttggccaatggtaatgtcattggctattttatttgcaaattaggggtgcgctagggtgatccgct |
527 |
Q |
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| T |
29840991 |
tatcttctattttgcatttttcccgactttatattttggtgaatggtaatgtcattggttattttccttgcaaatgaagggtgcttcagggtgatccgct |
29841090 |
T |
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| Q |
528 |
a |
528 |
Q |
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| T |
29841091 |
a |
29841091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 161 - 466
Target Start/End: Original strand, 29859875 - 29860181
Alignment:
| Q |
161 |
aaaattattacaaaaatcttaattgataggttagaaattgtccgcatgcacattattttagctaaccagagaggttttgttcgagttcgttatatatttg |
260 |
Q |
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| T |
29859875 |
aaaattattacaaaaatcttagttgataggttagaaattgtccgcatgcacattattttagctaaccaaagaggtttcgttcgagttcgttatatatttg |
29859974 |
T |
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| Q |
261 |
attgtgggattgtggtttctgaagttattaacttgttagaatagaatcagtttggtggtaatatggctatacaagttgacattaaaaaagcttttgattc |
360 |
Q |
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| T |
29859975 |
attgtgggattgtggcttctgaagctattaacttgttagaatagaatcagtttggtggtaatatggctatacaagttgacattaaaaaagcttttgattc |
29860074 |
T |
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| Q |
361 |
tttatcttggatgtttttgttattagtattgaaaaga-nnnnnnnnaaacatgtattttgggattggatatcttctattttgcatttttcccgactgtat |
459 |
Q |
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| T |
29860075 |
tttatcgtggatgtttttgttatttgtgttgaaaagatttgtttttaaacatgtattttgggattggatatcttctattttgcattttgcctgaatttat |
29860174 |
T |
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| Q |
460 |
attttgg |
466 |
Q |
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| T |
29860175 |
attttgg |
29860181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 29 - 166
Target Start/End: Original strand, 29859348 - 29859485
Alignment:
| Q |
29 |
gatgtgcgtgatccaatgtataacgtgtatattaggatgtatggatttgattaatcaagtggttattgaatgtggtttaacgatgagtgatttaattgaa |
128 |
Q |
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||||||||||||||||||||||| || ||||||||||||||| ||||||||||||| |||||||||||||||||||| || | ||||||||||||||||| |
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| T |
29859348 |
gatgtgcgtgatccaatgtataaggtctatattaggatgtatagatttgattaatctagtggttattgaatgtggttcaatggtgagtgatttaattgaa |
29859447 |
T |
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| Q |
129 |
acctcacctttgaatgccacaattttcaattcaaaatt |
166 |
Q |
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| T |
29859448 |
acctcacccttgaactccacaattttcaatttaaaatt |
29859485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 553 - 618
Target Start/End: Original strand, 29860219 - 29860283
Alignment:
| Q |
553 |
cttgctgaggatgttttcagcagagtttattgagtttacgtgtgtttctggatccttgtttcctat |
618 |
Q |
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| T |
29860219 |
cttgctgaggaagttttgagcaaagtt-attgagtttacgtgtgtttctggatccttgtttcctat |
29860283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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