View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2687_low_93 (Length: 240)

Name: NF2687_low_93
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2687_low_93
NF2687_low_93
[»] chr3 (3 HSPs)
chr3 (19-240)||(35708650-35708871)
chr3 (19-240)||(35724553-35724774)
chr3 (22-240)||(35725953-35726171)


Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 35708650 - 35708871
Alignment:
Q  19 ctccaagcatggtggacagaaattcgaacagtgggacatgcggacaaatctgaagaaccatggtggccaaatctcaaaacacaaaaagatcttactgata 118  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35708650 ctccaagcatggtggacagaaattcgaacagtgggacatgcagacaaatctgaagaaccatggtggccaaatctcaaaacacaaaaagatcttactgata 35708749  T
Q  119 tcatcactactataacttggatagcctctgctcatcatgcagctgtgaacttcacacaatatgcttatataggcttttttcctaatagaccaacaattgc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35708750 tcatcactactataacttggatagcctctgctcatcatgcagctgtgaacttcacacaatatgcttatataggcttttttcctaatagaccaacaattgc 35708849  T
Q  219 aagaaacaaaatgccaacagaa 240  Q
    ||||||||||||||||||||||    
T  35708850 aagaaacaaaatgccaacagaa 35708871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 35724553 - 35724774
Alignment:
Q  19 ctccaagcatggtggacagaaattcgaacagtgggacatgcggacaaatctgaagaaccatggtggccaaatctcaaaacacaaaaagatcttactgata 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | | |    
T  35724553 ctccaagcatggtggacagaaattcgaacagtgggacatgcggacaaatctgaagaaccatggtggccaaatctcaaaacacaaaatgatcttattaaca 35724652  T
Q  119 tcatcactactataacttggatagcctctgctcatcatgcagctgtgaacttcacacaatatgcttatataggcttttttcctaatagaccaacaattgc 218  Q
    |||| || |||||| |||||| ||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||    
T  35724653 tcattaccactatagcttggacagcatctgctcatcattcagctgtgaactttacacaatatgcttatataggctttttccctaatagaccaaccattgc 35724752  T
Q  219 aagaaacaaaatgccaacagaa 240  Q
     ||||| |||||||| ||||||    
T  35724753 tagaaagaaaatgcctacagaa 35724774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 22 - 240
Target Start/End: Complemental strand, 35726171 - 35725953
Alignment:
Q  22 caagcatggtggacagaaattcgaacagtgggacatgcggacaaatctgaagaaccatggtggccaaatctcaaaacacaaaaagatcttactgatatca 121  Q
    |||||||||||||||||| ||||||||   || || |  |||||||| ||||||||||||||||||||||| |||||||||||||| || | ||| ||||    
T  35726171 caagcatggtggacagaagttcgaacaaaaggccacggcgacaaatcagaagaaccatggtggccaaatctgaaaacacaaaaagacctcattgacatca 35726072  T
Q  122 tcactactataacttggatagcctctgctcatcatgcagctgtgaacttcacacaatatgcttatataggcttttttcctaatagaccaacaattgcaag 221  Q
    |||| |||||| ||||| |||| ||||| |||||| ||||    |||||| ||||||||||||||  ||||| |||||||||||||||||||||||| ||    
T  35726071 tcaccactatagcttgggtagcatctgcacatcattcagcaacaaacttcgcacaatatgcttatggaggctattttcctaatagaccaacaattgctag 35725972  T
Q  222 aaacaaaatgccaacagaa 240  Q
    |||||| ||||| ||||||    
T  35725971 aaacaacatgcctacagaa 35725953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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