View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2687_low_95 (Length: 239)
Name: NF2687_low_95
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2687_low_95 |
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| [»] scaffold0006 (2 HSPs) |
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Alignment Details
Target: scaffold0006 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 22 - 221
Target Start/End: Original strand, 81997 - 82196
Alignment:
| Q |
22 |
caagttaataagtgccttatattagattttaagaaaatttggcacttatcaggtggttgcgagaaattgatcgaaagagcgttggtgatggttacgaaat |
121 |
Q |
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| T |
81997 |
caagttaataagtgccttatattagattttaagaaaatttggcacttatcaggtggttgcgagaaattgatcgaaagagcgttggtgatggttacgaaat |
82096 |
T |
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| Q |
122 |
tcaaatatgaatcggtggcaaaatccgatccctcttgttccatggaacgaagtgaatcctccaacacctgaaccgtggggaaccatcaatctcctcttgc |
221 |
Q |
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| T |
82097 |
tcaaatatgaatcggtggcaaaatccgatccctctggttccatggaaggaagcgaatcctccaacagctgaaccgtggggaatcatcaatctcctcttgc |
82196 |
T |
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Target: scaffold0006; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 22 - 218
Target Start/End: Original strand, 130709 - 130903
Alignment:
| Q |
22 |
caagttaataagtgccttatattagattttaagaaaatttggcacttatcaggtggttgcgagaaattgatcgaaagagcgttggtgatggttacgaaat |
121 |
Q |
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| T |
130709 |
caagttaataactgccttatattggattttaattaaacttggcacttattaagtggttgcgagaaattgatcgaaagagcggtggtgatggtttcgaaat |
130808 |
T |
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| Q |
122 |
tcaaatatgaatcggtggcaaaatccgatccctcttgttccatggaacgaagtgaatcctccaacacctgaaccgtggggaaccatcaatctcctct |
218 |
Q |
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| T |
130809 |
tcta--acgaggcagtggcagaacccaatccctctagttccatggaaggaagcgaatcctctgacacctgaaccgttgggaagcatcaatctcctct |
130903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 22 - 218
Target Start/End: Original strand, 13602052 - 13602246
Alignment:
| Q |
22 |
caagttaataagtgccttatattagattttaagaaaatttggcacttatcaggtggttgcgagaaattgatcgaaagagcgttggtgatggttacgaaat |
121 |
Q |
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| T |
13602052 |
caagttaataactgccttatattggattttaattaaacttggcacttattaagtggttgcgagaaattgatcgaaagagcggtggtgatggtttcgaaat |
13602151 |
T |
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| Q |
122 |
tcaaatatgaatcggtggcaaaatccgatccctcttgttccatggaacgaagtgaatcctccaacacctgaaccgtggggaaccatcaatctcctct |
218 |
Q |
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| T |
13602152 |
tcta--acgaggcagtggcagaacccaatccctctagttccatggaaggaagcgaatcctctgacacctgaaccgttgggaagcatcaatctcctct |
13602246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 23 - 191
Target Start/End: Complemental strand, 19153247 - 19153081
Alignment:
| Q |
23 |
aagttaataagtgccttatattagattttaagaaaatttggcacttatcaggtggttgcgagaaattgatcgaaagagcgttggtgatggttacgaaatt |
122 |
Q |
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||||||||||| | ||||||| ||||||||| ||| ||||| |||||||||||||||| |||||||||| ||||||||| ||| || |||||| ||||| |
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| T |
19153247 |
aagttaataagcgttttatattggattttaagtaaacttggcgcttatcaggtggttgccagaaattgattgaaagagcggtggcgacggttacaaaatt |
19153148 |
T |
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| Q |
123 |
caaatatgaatcggtggcaaaatccgatccctcttgttccatggaacgaagtgaatcctccaacacctg |
191 |
Q |
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| T |
19153147 |
tga--atgagttggtggtggaatccgatctctcatgttccatggaaggaattgaatcctccgacacctg |
19153081 |
T |
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