View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2688_high_1 (Length: 344)
Name: NF2688_high_1
Description: NF2688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2688_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 24563895 - 24563559
Alignment:
| Q |
1 |
aagtgaaatgagagaatgattggaattaatgatttcaacgggcatacagggatttacgtgagtctagaaattaaagcagttgcgaacttatctaaaccat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24563895 |
aagtgaaatgagagaatgattggaattaatgatttcaacgggcatacagggatttacgtgagtctagaaattaaagcagttgcgaacttatctaaaccat |
24563796 |
T |
|
| Q |
101 |
tgttggtttggtttcttaattacggatgtagtttgagatttttaatgatacactattaatagaacataaaaagggagggaatccaagaagatatgctcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24563795 |
tgttggtttggtttcttaattacggatgtagtttgagatttttaatgatacactattaatagaacataaaaagggagggaatccaagaagatatgctcaa |
24563696 |
T |
|
| Q |
201 |
ctaaagataatgagttgatcgtggtatggctgctaagggcttttccaatacatttgctctgattcaagctatgaaccttcttggaattggttcggatcac |
300 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
24563695 |
ctaaagataatgagttgatcgtggtatggctactaagggcttttccaatacatttgctctgattcaagttatgaaccttcttggaattggttcggatcac |
24563596 |
T |
|
| Q |
301 |
actgttatctcaaaagctttggaagatatctcctatg |
337 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
24563595 |
actgttatctcaaaagctttggaagatatctcctatg |
24563559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 4 - 201
Target Start/End: Original strand, 45535858 - 45536060
Alignment:
| Q |
4 |
tgaaatgagagaatgattggaattaatgatttcaacgggcatacagggatttacgtgagtctagaaattaa----agcagttgcgaacttatctaaacca |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||| | || ||| |||||||||||||||| |
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| T |
45535858 |
tgaaatgagagaatgattggaattaatgatttcaacgggtatacaaggatttacatgagtctagaaattaattaaaacacttgggaacttatctaaacca |
45535957 |
T |
|
| Q |
100 |
tt-gttggtttggtttcttaattacggatgtagtttgagatttttaatgatacactattaatagaacataaaaagggagggaatccaagaagatatgctc |
198 |
Q |
| |
|
|| ||||||||||||||| |||||||||||||| | || ||||||||||||||||||||| ||||| | ||||||||||| ||||||||||||||||||| |
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|
| T |
45535958 |
tttgttggtttggtttctgaattacggatgtaggtcgaaatttttaatgatacactattattagaatagaaaaagggaggaaatccaagaagatatgctc |
45536057 |
T |
|
| Q |
199 |
aac |
201 |
Q |
| |
|
||| |
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|
| T |
45536058 |
aac |
45536060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 215 - 312
Target Start/End: Complemental strand, 44337525 - 44337428
Alignment:
| Q |
215 |
ttgatcgtggtatggctgctaagggcttttccaatacatttgctctgattcaagctatgaaccttcttggaattggttcggatcacactgttatctca |
312 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||| || | ||||||||| | |||||||||||||||||| ||||||| |
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|
| T |
44337525 |
ttgatcgtggtatggctactaagggcttttccaatacatttgctctgattcaagttacgcaccttcttgaatttggttcggatcacactgctatctca |
44337428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 59 - 209
Target Start/End: Complemental strand, 44337779 - 44337629
Alignment:
| Q |
59 |
tgagtctagaaattaaagcagttgcgaacttatctaaaccattgttggtttgg-tttcttaattacggatgtagtttgagatttttaatgatacactatt |
157 |
Q |
| |
|
||||||||||| ||||| || ||| ||||||||||||||||||||| |||||| ||||| |||||| || || || | | ||||||||||||||||| |
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|
| T |
44337779 |
tgagtctagaagttaaaacacttgggaacttatctaaaccattgttagtttggttttctgaattacaaatatatttcaaaaaatttaatgatacactatt |
44337680 |
T |
|
| Q |
158 |
aatagaacataaaaagggagggaatccaagaagatatgctcaactaaagata |
209 |
Q |
| |
|
| ||||||| ||||| ||||||||||||||| |||| |||||| |||||| |
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|
| T |
44337679 |
attagaaca-gaaaagtgagggaatccaagaaactatgttcaactgaagata |
44337629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 215 - 273
Target Start/End: Original strand, 45536177 - 45536235
Alignment:
| Q |
215 |
ttgatcgtggtatggctgctaagggcttttccaatacatttgctctgattcaagctatg |
273 |
Q |
| |
|
||||||||||||| ||| | |||||||||||||||||||||||||||||||||| |||| |
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|
| T |
45536177 |
ttgatcgtggtatagctaccaagggcttttccaatacatttgctctgattcaagttatg |
45536235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 116; Significance: 6e-59; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 9798797 - 9798586
Alignment:
| Q |
1 |
aagtgaaatgagagaatgattggaattaatgatttcaacgggcatacagggatttacg--tgagtctagaaattaaagcagttgcgaacttatctaaacc |
98 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||| ||||||||||| ||| |||||||| |||| || ||| ||||||||||||||| |
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|
| T |
9798797 |
aagtgaaatgagagaatgatagaaattaatgatttcaaa--------agggatttacgaatgaatctagaaactaaaacacttgggaacttatctaaacc |
9798706 |
T |
|
| Q |
99 |
attgttggtttggtttcttaattacggatgtagtttgagatttttaatgatacactattaatagaacataaaaagggagggaatccaagaagatatgctc |
198 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| || | ||| ||||||||||||||||||||||||| |
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|
| T |
9798705 |
attgttgatttggtttcttaattacggatgtagttcgagatttttaatgatacactattattagagcagacaaatggagggaatccaagaagatatgctc |
9798606 |
T |
|
| Q |
199 |
aactaaagataatgagttga |
218 |
Q |
| |
|
|||||||||||| ||||||| |
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|
| T |
9798605 |
aactaaagataaggagttga |
9798586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 99 - 201
Target Start/End: Original strand, 19190201 - 19190303
Alignment:
| Q |
99 |
attgttggtttggtttcttaattacggatgtagtttgagatttttaatgatacactattaatagaacataaaaagggagggaatccaagaagatatgctc |
198 |
Q |
| |
|
||||||||||| |||||| ||||| | ||||| || || | |||||||||| ||||||| ||||||| |||||| |||||||||||||||| ||||||| |
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|
| T |
19190201 |
attgttggtttagtttctgaattatgaatgtatttcgaaaattttaatgatgtactattattagaacagaaaaagtgagggaatccaagaagctatgctc |
19190300 |
T |
|
| Q |
199 |
aac |
201 |
Q |
| |
|
||| |
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|
| T |
19190301 |
aac |
19190303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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