View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2688_high_1_N (Length: 545)
Name: NF2688_high_1_N
Description: NF2688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2688_high_1_N |
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| [»] scaffold0197 (2 HSPs) |
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Alignment Details
Target: scaffold0197 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: scaffold0197
Description:
Target: scaffold0197; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 54 - 516
Target Start/End: Original strand, 30353 - 30820
Alignment:
| Q |
54 |
taaatgaatgaggtgaggacaagtgaagtagttaacagtatcatgaaagttta-----cgatattgcgcttgagtcttattgaaaagaatcatatgcaaa |
148 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| | ||| | |||||||||||||||||||||||||||||||||||||||| |
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| T |
30353 |
taaatgaatgaggtgaggacaagtgaagtagttaacagtatcattcattcttatcaccccatattgcgcttgagtcttattgaaaagaatcatatgcaaa |
30452 |
T |
|
| Q |
149 |
tgtcgtaatgcaattccgagatatctatnnnnnnnnnnnnnnnnn-ttagagataccttattggttggtttcacatgccacggatcccgatcctatcacc |
247 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30453 |
tgtcgtaatgcaattccgagatatctataaaaaaaaaaaaaaaaaattagagataccttattggttggtttcacatgccacggatcccgatcctatcacc |
30552 |
T |
|
| Q |
248 |
cttcctgcaaagacgcacaaccgttgataactattcccatcaacggtcaccatctccccctttcaccttctcaaattttcccaattcccgcannnnnnnc |
347 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
30553 |
cttcctgcaaagacgcacaaccgttgataactatttccatcaacggtcaccatctccccctttcaccttctcaaattttcccaattcccgcatttttttc |
30652 |
T |
|
| Q |
348 |
ttcaatcttctccgccctataaaacacccaaaacacttcttccaccatccatcatcccaataacatctcaaaatattttctttctcttcaatttcttttc |
447 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
30653 |
ttcaatcttctccgccctataaaacacccaaaacacttcttccaccatccatcatcccaataacatctc-aaatattttctttctcttcaatttcttttc |
30751 |
T |
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| Q |
448 |
aatcaaaatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaact |
516 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30752 |
aatcaaaatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaact |
30820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0197; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 9 - 56
Target Start/End: Original strand, 28316 - 28363
Alignment:
| Q |
9 |
agcagagacaaacctagggatgtcaaagtgaatggaaaagataagtaa |
56 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28316 |
agcagagacaaacctagggatgtcaaagtgaatggaaaagataagtaa |
28363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 206 - 516
Target Start/End: Original strand, 21317073 - 21317382
Alignment:
| Q |
206 |
tattggttggtttcacatgccacggatcccgatcctatcacccttcctgcaaagacgcacaaccgttgataactattcccatcaacggtcaccatctccc |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21317073 |
tattggttggtttcacatgccacggatcccgatcctatcacccttcctgcaaagacgcacaaccgttgataactattcccatcaacggtcaccatctccc |
21317172 |
T |
|
| Q |
306 |
cctttcaccttctcaaattttcccaattcccgcannnnnnncttcaatcttctccgccctataaaacacccaaaacacttcttccaccatccatcatccc |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
21317173 |
cctttcaccttctcaaattttcccaattcccgcatttttttcttcaatcttctccgccctataaaacacccaaaacacttcttccaacatccatcatccc |
21317272 |
T |
|
| Q |
406 |
aataacatctcaaaatattttctttctcttcaatttcttttcaatcaaaatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagcccca |
505 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21317273 |
aataacatctc-aaatattttctttctctcagttttcttttcaatcaaaatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagcccca |
21317371 |
T |
|
| Q |
506 |
cgcaaacaact |
516 |
Q |
| |
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||||||||||| |
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| T |
21317372 |
cgcaaacaact |
21317382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 9 - 176
Target Start/End: Original strand, 21316816 - 21316983
Alignment:
| Q |
9 |
agcagagacaaacctagggatgtcaaagtgaatggaaaagataagtaaatgaatgaggtgaggacaagtgaagtagttaacagtatcatgaaagtttacg |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
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| T |
21316816 |
agcagagacaaacctagggatgtcaaagtgaatggaacagataagtaaatgaatgaggtgaggacaagtgaattagttaacagtatcatgaaagtttatg |
21316915 |
T |
|
| Q |
109 |
atattgcgcttgagtcttattgaaaagaatcatatgcaaatgtcgtaatgcaattccgagatatctat |
176 |
Q |
| |
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|||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
21316916 |
atattgcgctcgagtcttattgaaaagaatcatatacaaatgtcgtaatgcaattccgagatatctat |
21316983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 9 - 137
Target Start/End: Original strand, 21314031 - 21314159
Alignment:
| Q |
9 |
agcagagacaaacctagggatgtcaaagtgaatggaaaagataagtaaatgaatgaggtgaggacaagtgaagtagttaacagtatcatgaaagtttacg |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
21314031 |
agcagagacaaacctagggatgtcaaagtgaatggaaaagataagtaaatgaatgaggtgaggacaagtgaagtagttaacagtatcatgaaagtttatg |
21314130 |
T |
|
| Q |
109 |
atattgcgcttgagtcttattgaaaagaa |
137 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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| T |
21314131 |
atattgcgcttgagtcttattgaaaagaa |
21314159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 454 - 516
Target Start/End: Complemental strand, 3930343 - 3930281
Alignment:
| Q |
454 |
aatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaact |
516 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||| |
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|
| T |
3930343 |
aatggcacgtaccaaacaaacagcacgaaaatccaccggaggaaaagccccacggaaacaact |
3930281 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 450 - 516
Target Start/End: Original strand, 13576090 - 13576156
Alignment:
| Q |
450 |
tcaaaatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaact |
516 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
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| T |
13576090 |
tcaaaatggcacgtaccaaacaaacagcccgcaaatccaccggcggaaaagcaccacgcaaacaact |
13576156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 455 - 501
Target Start/End: Original strand, 12531239 - 12531285
Alignment:
| Q |
455 |
atggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagc |
501 |
Q |
| |
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||||| |||||||| |||||||| ||||||||||||||||||||||| |
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|
| T |
12531239 |
atggctcgtaccaagcaaacagctcgcaaatccaccggcggaaaagc |
12531285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 455 - 501
Target Start/End: Complemental strand, 12547380 - 12547334
Alignment:
| Q |
455 |
atggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagc |
501 |
Q |
| |
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||||| |||||||| |||||||| ||||||||||||||||||||||| |
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| T |
12547380 |
atggctcgtaccaagcaaacagctcgcaaatccaccggcggaaaagc |
12547334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 456 - 501
Target Start/End: Complemental strand, 9867038 - 9866993
Alignment:
| Q |
456 |
tggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagc |
501 |
Q |
| |
|
||||| ||||||||||||| || ||||||||||||||||| ||||| |
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| T |
9867038 |
tggcatgtaccaaacaaacggctcgcaaatccaccggcggtaaagc |
9866993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 455 - 495
Target Start/End: Original strand, 38799242 - 38799282
Alignment:
| Q |
455 |
atggcacgtaccaaacaaacagcacgcaaatccaccggcgg |
495 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||||| |
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|
| T |
38799242 |
atggcacgtaccaagcaaacagctcgcaaatccaccggcgg |
38799282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 455 - 495
Target Start/End: Complemental strand, 38822275 - 38822235
Alignment:
| Q |
455 |
atggcacgtaccaaacaaacagcacgcaaatccaccggcgg |
495 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||||| |
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|
| T |
38822275 |
atggcacgtaccaagcaaacagctcgcaaatccaccggcgg |
38822235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 453 - 516
Target Start/End: Complemental strand, 43480057 - 43479994
Alignment:
| Q |
453 |
aaatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaact |
516 |
Q |
| |
|
||||||| |||||||||||||| || |||||||||||||| || ||||| ||| | |||||||| |
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|
| T |
43480057 |
aaatggctcgtaccaaacaaaccgctcgcaaatccaccggtggcaaagctccaaggaaacaact |
43479994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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