View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2688_high_4 (Length: 242)
Name: NF2688_high_4
Description: NF2688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2688_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 20 - 226
Target Start/End: Complemental strand, 2564045 - 2563839
Alignment:
| Q |
20 |
ttctaagcaatgactttaggaaatacatatttgtttaactttgttaggtcagtcaagtgttactgaagacaaagaaacaaaggagtattgttgaagatga |
119 |
Q |
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| T |
2564045 |
ttctaagcaatgactttaagaaatatatatttgtttaactttgttaggtcagtcaagtgtaactgaagacaaagaaacaaaggagtattgttgaagatga |
2563946 |
T |
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| Q |
120 |
aaagccaaagtgaaacggatatacaagacggtaacaacgcagacagactcagtgatctgccgaactatcttcttctgcatatatttgaatttatgaacat |
219 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
2563945 |
aaagccaaagtgaaacagatatacaagacggtaacaacgcagacagactcagtgatctgccgaaccatcttcttctgcatatatttgaatttatgaacat |
2563846 |
T |
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| Q |
220 |
aaaatgt |
226 |
Q |
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||||||| |
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| T |
2563845 |
aaaatgt |
2563839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 47 - 94
Target Start/End: Complemental strand, 34800699 - 34800652
Alignment:
| Q |
47 |
tatttgtttaactttgttaggtcagtcaagtgttactgaagacaaaga |
94 |
Q |
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||||||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
34800699 |
tatttgtgtaactttgttaggtcagtcaagtgttactgaagataaaga |
34800652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 94
Target Start/End: Complemental strand, 34776760 - 34776720
Alignment:
| Q |
55 |
taactttgttaggtcagtc-aagtgttactgaagacaaaga |
94 |
Q |
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||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
34776760 |
taactttgttaggtcagtcgaagtgttactgaagataaaga |
34776720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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