View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2688_low_1_N (Length: 853)
Name: NF2688_low_1_N
Description: NF2688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2688_low_1_N |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 508 - 818
Target Start/End: Original strand, 51526101 - 51526420
Alignment:
| Q |
508 |
tccaccggcttttaaatgagtaacgtaacctataacctcaccaaagcgtcacttgcaatgcacctcccctataactacaaatatattatgtcatgttttt |
607 |
Q |
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| T |
51526101 |
tccaccggcttttaaatgagtaacgtaacctataacctcaccaaagcgtcacttgcaatgcacctcccctataactacaaacatattatgtcatgttttt |
51526200 |
T |
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| Q |
608 |
tggattaagctagcagcgcgcattttgtgactcaacgagagcta----------gaagtgaagagtgatactctaattcattcatttcggagcagatcca |
697 |
Q |
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| T |
51526201 |
tggattaagctagcagcgcgcattttgtgactcaacgagagctagaagtgaagtgaagtgaagagtgatactctaattcattcatttcggagcagatcca |
51526300 |
T |
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| Q |
698 |
agtaaaacaagagtagcattaataattactaagttcaccagagagcaggtataatcaatcgaccttctttttccc-tttttcaaa-tccgaggtttgaat |
795 |
Q |
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| T |
51526301 |
agtaaaacaagagtagc---aataattgctaagttcaccagagagcaggtataatcaatcgaccttctttttcccatttttcaaattctgaggttcgaat |
51526397 |
T |
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| Q |
796 |
accaatcctttcatattgtaatg |
818 |
Q |
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| T |
51526398 |
accaatcctttcatattgtaatg |
51526420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 85 - 286
Target Start/End: Original strand, 51525712 - 51525913
Alignment:
| Q |
85 |
acttggacactaggagaaccatatattttgcgctaaatgaacaatgatactcccattgtcatcattgcatcaagaattaaaatgttgtttgattgattgc |
184 |
Q |
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| T |
51525712 |
acttggacactaggagaaccatatattttgcgctaaatgaacaatgatactcccattgtcatcattgcatcaagaattaaaatgttgtttgattgattgc |
51525811 |
T |
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| Q |
185 |
aaggttctttcaacttatgctttctgtctcccaaaaactatgaaaatgttggcattagtaaactcaaagcctgctgatacggcaaataaggatccattta |
284 |
Q |
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| T |
51525812 |
aaggttctttcaacttatgctttctgtctcccaaaaactatgaaaatgttggcattagtaaactcaaagcctgctgatacggcaaataaggatccatata |
51525911 |
T |
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| Q |
285 |
ct |
286 |
Q |
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|| |
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| T |
51525912 |
ct |
51525913 |
T |
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