View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2688_low_3 (Length: 493)
Name: NF2688_low_3
Description: NF2688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2688_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 30 - 479
Target Start/End: Original strand, 11292254 - 11292703
Alignment:
| Q |
30 |
cctgagacgactcaccaccaacttggcattatggtattgatcaccccttataggccaagccaacaatggaatcccacgtccaatagcctcaatcgttgaa |
129 |
Q |
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| T |
11292254 |
cctgagacgactcaccaccaacttggcattatggtattgatcaccccttataggccaagccaacaatggaatcccacgtccaatagcctcaatcgttgaa |
11292353 |
T |
|
| Q |
130 |
ttccaaccacaatgtgataagaatccacctgttgatgtgtgactaagtatcaatagttgtggtgcccatcctcgtattatcagacctctattcccaactc |
229 |
Q |
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| T |
11292354 |
ttccaaccacaatgtgataagaatccacctgttgatgtgtgactcagtatcaacagttgtggtgcccatcctcgtattatcaaacctctattcccaactc |
11292453 |
T |
|
| Q |
230 |
ttttatccaatccatgaggaaaatatccttctgctttaggtattcctaaaccgggttctcctcttaaacgaagaggacttggtctacccgtaccggtttg |
329 |
Q |
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| T |
11292454 |
ttttatccaatccatgaggaaaatatccttctgctttaggtattcctaaaccgggttctcctcttaaacgaggaggacttggtctacccttaccggtttg |
11292553 |
T |
|
| Q |
330 |
aaccacccatataaatggctgctcacatgactccattgcttgggctagtttcgtatactcttccattgtgggactcacctcagtaccaaacgacacgtat |
429 |
Q |
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| T |
11292554 |
aaccacccatataaatggctgctcacatgactccattgcttgggctagttccgtatactcttccattgtgggactcacctcagtaccaaacgacacgtat |
11292653 |
T |
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| Q |
430 |
aaaactgagctacgtggcttcaaatctaaccactggatcacttcttcctc |
479 |
Q |
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| T |
11292654 |
aaaactgagctacgtggcttcaaatctaaccactggatcacttcttcctc |
11292703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 117 - 173
Target Start/End: Complemental strand, 3719508 - 3719452
Alignment:
| Q |
117 |
ctcaatcgttgaattccaaccacaatgtgataagaatccacctgttgatgtgtgact |
173 |
Q |
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| T |
3719508 |
ctcaagcgtcgaattccaaccacaatgtgttaaaaatccacctgttgaagtgtgact |
3719452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 127 - 176
Target Start/End: Complemental strand, 3701222 - 3701173
Alignment:
| Q |
127 |
gaattccaaccacaatgtgataagaatccacctgttgatgtgtgactaag |
176 |
Q |
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| T |
3701222 |
gaattccaaccacaatgtgttaaaaatccaccggttgaagtgtgactaag |
3701173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 124 - 173
Target Start/End: Original strand, 3770203 - 3770252
Alignment:
| Q |
124 |
gttgaattccaaccacaatgtgataagaatccacctgttgatgtgtgact |
173 |
Q |
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| T |
3770203 |
gttgaattccaaccacaatgtgttaaaaatccacctgttgaattgtgact |
3770252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 117 - 173
Target Start/End: Complemental strand, 3707999 - 3707943
Alignment:
| Q |
117 |
ctcaatcgttgaattccaaccacaatgtgataagaatccacctgttgatgtgtgact |
173 |
Q |
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| T |
3707999 |
ctcaagcgtcgaattccaaccacaatgtgttaaaaatccacctgttgaattgtgact |
3707943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 170
Target Start/End: Original strand, 33005115 - 33005161
Alignment:
| Q |
124 |
gttgaattccaaccacaatgtgataagaatccacctgttgatgtgtg |
170 |
Q |
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| T |
33005115 |
gttgaattccaaccacaatgtgttaaaaatccaccagttgaagtgtg |
33005161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 124 - 164
Target Start/End: Complemental strand, 41562657 - 41562617
Alignment:
| Q |
124 |
gttgaattccaaccacaatgtgataagaatccacctgttga |
164 |
Q |
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| T |
41562657 |
gttgaattccaaccacaatgagataaaaatccaccagttga |
41562617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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