View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2688_low_5 (Length: 417)
Name: NF2688_low_5
Description: NF2688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2688_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 93; Significance: 4e-45; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 224 - 344
Target Start/End: Original strand, 14029167 - 14029287
Alignment:
| Q |
224 |
tgtggtcctaattaattggaaagttatgtatcaatagctaaagaaatcctttttaatggtcctaataattacttaaaaatgataatttttctgttaacag |
323 |
Q |
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| T |
14029167 |
tgtggtcataattacttggaaagttatgtatcaatagcttaagaaatcctttttaatagtcctaataattacttaaaaatgataatttttttgttaacag |
14029266 |
T |
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| Q |
324 |
atgttcttacgtattttttgt |
344 |
Q |
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| T |
14029267 |
acgttcttacatattttttgt |
14029287 |
T |
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Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 154 - 219
Target Start/End: Original strand, 13937008 - 13937073
Alignment:
| Q |
154 |
ctaataattatcacacaaattatcacgtatatatttttgttcctaattacttaaatatcaatgtat |
219 |
Q |
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| T |
13937008 |
ctaataattatcacacaaattataccgtatatatttttgttcctaattacttaaatatcaatgtat |
13937073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 154 - 237
Target Start/End: Original strand, 14029067 - 14029148
Alignment:
| Q |
154 |
ctaataattatcacacaaattatcacgtatatatttttgttcctaattacttaaatatcaatgtattgtttgtggtcctaatta |
237 |
Q |
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| T |
14029067 |
ctaataattattacacaaattatcccgtata--tttttgttcctaattacttaaatatcaatttattgtttatggtcctaatta |
14029148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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