View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2688_low_6 (Length: 364)
Name: NF2688_low_6
Description: NF2688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2688_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 30 - 354
Target Start/End: Complemental strand, 24563883 - 24563559
Alignment:
| Q |
30 |
agaatgattggaattaatgatttcaacgggcatacagggatttacgtgagtctagaaattaaagcagttgcgaacttatctaaaccattgttggtttggt |
129 |
Q |
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| T |
24563883 |
agaatgattggaattaatgatttcaacgggcatacagggatttacgtgagtctagaaattaaagcagttgcgaacttatctaaaccattgttggtttggt |
24563784 |
T |
|
| Q |
130 |
ttcttaattacggatgtagtttgagatttttaatgatacactattaatagaacataaaaagggagggaatccaagaagatatgctcaactaaagataatg |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24563783 |
ttcttaattacggatgtagtttgagatttttaatgatacactattaatagaacataaaaagggagggaatccaagaagatatgctcaactaaagataatg |
24563684 |
T |
|
| Q |
230 |
agttgatcgtggtatggctgctaagggcttttccaatacatttgctctgattcaagctatgaaccttcttggaattggttcggatcacactgttatctca |
329 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24563683 |
agttgatcgtggtatggctactaagggcttttccaatacatttgctctgattcaagttatgaaccttcttggaattggttcggatcacactgttatctca |
24563584 |
T |
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| Q |
330 |
aaagctttggaagatatctcctatg |
354 |
Q |
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| T |
24563583 |
aaagctttggaagatatctcctatg |
24563559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 113; Significance: 4e-57; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 30 - 218
Target Start/End: Original strand, 45535867 - 45536060
Alignment:
| Q |
30 |
agaatgattggaattaatgatttcaacgggcatacagggatttacgtgagtctagaaattaa----agcagttgcgaacttatctaaaccatt-gttggt |
124 |
Q |
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| T |
45535867 |
agaatgattggaattaatgatttcaacgggtatacaaggatttacatgagtctagaaattaattaaaacacttgggaacttatctaaaccatttgttggt |
45535966 |
T |
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| Q |
125 |
ttggtttcttaattacggatgtagtttgagatttttaatgatacactattaatagaacataaaaagggagggaatccaagaagatatgctcaac |
218 |
Q |
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||||||||| |||||||||||||| | || ||||||||||||||||||||| ||||| | ||||||||||| |||||||||||||||||||||| |
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| T |
45535967 |
ttggtttctgaattacggatgtaggtcgaaatttttaatgatacactattattagaatagaaaaagggaggaaatccaagaagatatgctcaac |
45536060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 232 - 329
Target Start/End: Complemental strand, 44337525 - 44337428
Alignment:
| Q |
232 |
ttgatcgtggtatggctgctaagggcttttccaatacatttgctctgattcaagctatgaaccttcttggaattggttcggatcacactgttatctca |
329 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||| || | ||||||||| | |||||||||||||||||| ||||||| |
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| T |
44337525 |
ttgatcgtggtatggctactaagggcttttccaatacatttgctctgattcaagttacgcaccttcttgaatttggttcggatcacactgctatctca |
44337428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 76 - 226
Target Start/End: Complemental strand, 44337779 - 44337629
Alignment:
| Q |
76 |
tgagtctagaaattaaagcagttgcgaacttatctaaaccattgttggtttgg-tttcttaattacggatgtagtttgagatttttaatgatacactatt |
174 |
Q |
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||||||||||| ||||| || ||| ||||||||||||||||||||| |||||| ||||| |||||| || || || | | ||||||||||||||||| |
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| T |
44337779 |
tgagtctagaagttaaaacacttgggaacttatctaaaccattgttagtttggttttctgaattacaaatatatttcaaaaaatttaatgatacactatt |
44337680 |
T |
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| Q |
175 |
aatagaacataaaaagggagggaatccaagaagatatgctcaactaaagata |
226 |
Q |
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| ||||||| ||||| ||||||||||||||| |||| |||||| |||||| |
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| T |
44337679 |
attagaaca-gaaaagtgagggaatccaagaaactatgttcaactgaagata |
44337629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 232 - 290
Target Start/End: Original strand, 45536177 - 45536235
Alignment:
| Q |
232 |
ttgatcgtggtatggctgctaagggcttttccaatacatttgctctgattcaagctatg |
290 |
Q |
| |
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||||||||||||| ||| | |||||||||||||||||||||||||||||||||| |||| |
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| T |
45536177 |
ttgatcgtggtatagctaccaagggcttttccaatacatttgctctgattcaagttatg |
45536235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 65 - 235
Target Start/End: Complemental strand, 9798758 - 9798586
Alignment:
| Q |
65 |
agggatttacg--tgagtctagaaattaaagcagttgcgaacttatctaaaccattgttggtttggtttcttaattacggatgtagtttgagatttttaa |
162 |
Q |
| |
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||||||||||| ||| |||||||| |||| || ||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
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| T |
9798758 |
agggatttacgaatgaatctagaaactaaaacacttgggaacttatctaaaccattgttgatttggtttcttaattacggatgtagttcgagatttttaa |
9798659 |
T |
|
| Q |
163 |
tgatacactattaatagaacataaaaagggagggaatccaagaagatatgctcaactaaagataatgagttga |
235 |
Q |
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||||||||||||| |||| || | ||| ||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
9798658 |
tgatacactattattagagcagacaaatggagggaatccaagaagatatgctcaactaaagataaggagttga |
9798586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 116 - 218
Target Start/End: Original strand, 19190201 - 19190303
Alignment:
| Q |
116 |
attgttggtttggtttcttaattacggatgtagtttgagatttttaatgatacactattaatagaacataaaaagggagggaatccaagaagatatgctc |
215 |
Q |
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||||||||||| |||||| ||||| | ||||| || || | |||||||||| ||||||| ||||||| |||||| |||||||||||||||| ||||||| |
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| T |
19190201 |
attgttggtttagtttctgaattatgaatgtatttcgaaaattttaatgatgtactattattagaacagaaaaagtgagggaatccaagaagctatgctc |
19190300 |
T |
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| Q |
216 |
aac |
218 |
Q |
| |
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||| |
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| T |
19190301 |
aac |
19190303 |
T |
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