View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2688_low_7 (Length: 344)
Name: NF2688_low_7
Description: NF2688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2688_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 154 - 219
Target Start/End: Original strand, 13937008 - 13937073
Alignment:
| Q |
154 |
ctaataattatcacacaaattatcacgtatatatttttgttcctaattacttaaatatcaatgtat |
219 |
Q |
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| T |
13937008 |
ctaataattatcacacaaattataccgtatatatttttgttcctaattacttaaatatcaatgtat |
13937073 |
T |
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Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 154 - 222
Target Start/End: Original strand, 14029067 - 14029133
Alignment:
| Q |
154 |
ctaataattatcacacaaattatcacgtatatatttttgttcctaattacttaaatatcaatgtattgt |
222 |
Q |
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| T |
14029067 |
ctaataattattacacaaattatcccgtata--tttttgttcctaattacttaaatatcaatttattgt |
14029133 |
T |
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