View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2689_low_2 (Length: 355)
Name: NF2689_low_2
Description: NF2689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2689_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 1793213 - 1793552
Alignment:
| Q |
1 |
taatctcaatcgttttgtcgtccacggtagccctacttgcttagagaagttaatttgtagttgtgtatggatgatatgcgcattctggtttttacaaata |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||| |||| |||||||||||||| ||||||| |||| ||||||||||||||| |||||||||||| |
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| T |
1793213 |
taatctcaatcgttttgtcgtccatggtagccctactagctttgagaagttaatttgcagttgtgcgtggaggatatgcgcattctgatttttacaaata |
1793312 |
T |
|
| Q |
101 |
atagcattaaaacgataactaaaatgaatagaggaataatattcgattttttctagctacaccctataaactttcagctactccataagttgacaaaaat |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||| |
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| T |
1793313 |
atagcattaaaacgataactaaaatggatagaggaatagtattcgattttttttagctacaccctataaacgttcagctactccataagttgacgaaaat |
1793412 |
T |
|
| Q |
201 |
acccttaatccctttttaagcttttgatcaagtgattaaacttgacgctcgaaaagtttgagcagaaggtatccaaataaaaactatgatatgatgatat |
300 |
Q |
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||||||| ||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||| |||| |
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| T |
1793413 |
acccttagtccctttttaaactttcgatcaagtgattaaacttgacactcgaaaagtttgagcagaaggtatccaaatgaaaactacgatatgataatat |
1793512 |
T |
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| Q |
301 |
gatatgataattgttcactacaaattggacagagtaatgt |
340 |
Q |
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||||||||| |||||||||||||||||||||||||||||| |
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| T |
1793513 |
gatatgatatttgttcactacaaattggacagagtaatgt |
1793552 |
T |
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