View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2689_low_3 (Length: 308)
Name: NF2689_low_3
Description: NF2689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2689_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 17 - 217
Target Start/End: Complemental strand, 23938873 - 23938673
Alignment:
| Q |
17 |
caagcatctctacacttgtatgtaagatgcattgagattttgaagcctgtgttttgaaattggaatgccgacattctaatcgatgggaacgcagaatctc |
116 |
Q |
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| T |
23938873 |
caagcatctctacactcatatgtaagatgcattgagattttgaagcctgtgttttgaaattggaatgccaacattctaatcgatgggaacgcagaatctc |
23938774 |
T |
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| Q |
117 |
caaaattgtggtgtgtgtttgtttgttttcttagtaaaaattgtgctaaagagatcgtaaatcataattacccgattatatagtacacgaatatatcgca |
216 |
Q |
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| T |
23938773 |
caaaactgtggtgtgtgtttgtttgttttcttagaaaaaattgtgctaaagagatcgtaaatcataattaccggattatgtagtacgcgaatatatcgca |
23938674 |
T |
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| Q |
217 |
t |
217 |
Q |
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| T |
23938673 |
t |
23938673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 246 - 301
Target Start/End: Complemental strand, 23938673 - 23938617
Alignment:
| Q |
246 |
tcctcctgatatagttta-gccaaactattattgtaacatgagcattatgatgatgt |
301 |
Q |
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| T |
23938673 |
tcctcctgatatagtttaagccaaactattattgtaacaggagcattatgatgatgt |
23938617 |
T |
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