View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2689_low_4 (Length: 238)

Name: NF2689_low_4
Description: NF2689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2689_low_4
NF2689_low_4
[»] chr7 (9 HSPs)
chr7 (26-238)||(46479124-46479336)
chr7 (30-238)||(46520554-46520762)
chr7 (39-236)||(46490328-46490525)
chr7 (27-236)||(46532175-46532384)
chr7 (29-236)||(46524622-46524829)
chr7 (26-232)||(46326432-46326638)
chr7 (27-224)||(46494638-46494835)
chr7 (26-236)||(46322727-46322937)
chr7 (29-237)||(46516914-46517122)
[»] chr4 (2 HSPs)
chr4 (41-165)||(88036-88157)
chr4 (127-164)||(49833648-49833685)
[»] chr1 (1 HSPs)
chr1 (41-165)||(37152073-37152194)
[»] chr3 (1 HSPs)
chr3 (148-236)||(7475308-7475396)


Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 26 - 238
Target Start/End: Complemental strand, 46479336 - 46479124
Alignment:
Q  26 gagagatggaaggaatagaacacagaacggtggaagtgaatggcatcaaaatgcatattgcagagaaaggaaaagaaggtccagttgttttgttccttca 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46479336 gagagatggaaggaatagaacacagaacggtggaagtgaatggcatcaaaatgcatattgcagagaaaggaaaagaaggtccagttgttttgttccttca 46479237  T
Q  126 cggcttccctgaactctggtattcatggcgccaccagattgcagctcttggctccctcggttaccgtgctgttgctccagatcttcgtggctacggcgac 225  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46479236 cggcttccctgaactctggtattcatggcgccaccagattgctgctcttggctccctcggttaccgtgctgttgctccagatcttcgtggctacggcgac 46479137  T
Q  226 accgatgctcccg 238  Q
    |||||||||||||    
T  46479136 accgatgctcccg 46479124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 30 - 238
Target Start/End: Complemental strand, 46520762 - 46520554
Alignment:
Q  30 gatggaaggaatagaacacagaacggtggaagtgaatggcatcaaaatgcatattgcagagaaaggaaaagaaggtccagttgttttgttccttcacggc 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46520762 gatggaaggaatagaacacagaacggtggaagtgaatggcatcaaaatgcatattgcagagaaaggaaaagaaggtccagttgttttgttccttcacggc 46520663  T
Q  130 ttccctgaactctggtattcatggcgccaccagattgcagctcttggctccctcggttaccgtgctgttgctccagatcttcgtggctacggcgacaccg 229  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46520662 ttccctgaactctggtattcatggcgccaccagattgctgctcttggctccctcggttaccgtgctgttgctccagatcttcgtggctacggcgacaccg 46520563  T
Q  230 atgctcccg 238  Q
    |||||||||    
T  46520562 atgctcccg 46520554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 39 - 236
Target Start/End: Complemental strand, 46490525 - 46490328
Alignment:
Q  39 aatagaacacagaacggtggaagtgaatggcatcaaaatgcatattgcagagaaaggaaaagaaggtccagttgttttgttccttcacggcttccctgaa 138  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||| || |||||  |||||||||| ||||||||||||    
T  46490525 aatagaacacagaacagtggaagtgaatggcatcaaaatgcatattgctgagaaaggtaaagaaggacccgttgtcctgttccttcatggcttccctgaa 46490426  T
Q  139 ctctggtattcatggcgccaccagattgcagctcttggctccctcggttaccgtgctgttgctccagatcttcgtggctacggcgacaccgatgctcc 236  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||| ||||| || |||||||||||||||||    
T  46490425 ctctggtattcatggcgccaccagatttctgctcttggctccctcggttaccgcgctgttgctccagatctccgtggttatggcgacaccgatgctcc 46490328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 27 - 236
Target Start/End: Complemental strand, 46532384 - 46532175
Alignment:
Q  27 agagatggaaggaatagaacacagaacggtggaagtgaatggcatcaaaatgcatattgcagagaaaggaaaagaaggtccagttgttttgttccttcac 126  Q
    ||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||| || |||||||||||||| || ||||| |||||||||||     
T  46532384 agagatggaaggaatagaacacagaacagtggaggtgaatggaatcaaaatgcatattgctgaaaaaggaaaagaaggacctgttgtcttgttccttcat 46532285  T
Q  127 ggcttccctgaactctggtattcatggcgccaccagattgcagctcttggctccctcggttaccgtgctgttgctccagatcttcgtggctacggcgaca 226  Q
    |||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||| || |||||||||||||| |||||||| || ||||    
T  46532284 ggcttcccagaactctggtattcatggcgccaccaaattgtagctcttggctccctcggttaccgcgccgttgctccagatctgcgtggctatggtgaca 46532185  T
Q  227 ccgatgctcc 236  Q
    |||| |||||    
T  46532184 ccgaggctcc 46532175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 29 - 236
Target Start/End: Complemental strand, 46524829 - 46524622
Alignment:
Q  29 agatggaaggaatagaacacagaacggtggaagtgaatggcatcaaaatgcatattgcagagaaaggaaaagaaggtccagttgttttgttccttcacgg 128  Q
    ||||||||||||||||||||||||  |||||||||||||| ||||||||||||||||| |||||||| |||||||| || ||||| ||||||||||| ||    
T  46524829 agatggaaggaatagaacacagaagagtggaagtgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgtcttgttccttcatgg 46524730  T
Q  129 cttccctgaactctggtattcatggcgccaccagattgcagctcttggctccctcggttaccgtgctgttgctccagatcttcgtggctacggcgacacc 228  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||  |||||||||| ||||||||||||||||| ||||| |||||||| || ||||||    
T  46524729 cttcccagaactctggtattcatggcgccaccagattgtagctctcagctccctcggctaccgtgctgttgctcccgatctccgtggctatggtgacacc 46524630  T
Q  229 gatgctcc 236  Q
    ||||||||    
T  46524629 gatgctcc 46524622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 26 - 232
Target Start/End: Original strand, 46326432 - 46326638
Alignment:
Q  26 gagagatggaaggaatagaacacagaacggtggaagtgaatggcatcaaaatgcatattgcagagaaaggaaaagaaggtccagttgttttgttccttca 125  Q
    ||||||||||| |||||||||| ||||| |||||||||||||| ||||||||||||||||| |||||||| |||||||| || |||||||||||||||||    
T  46326432 gagagatggaaagaatagaacatagaacagtggaagtgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgttttgttccttca 46326531  T
Q  126 cggcttccctgaactctggtattcatggcgccaccagattgcagctcttggctccctcggttaccgtgctgttgctccagatcttcgtggctacggcgac 225  Q
    |||||| |||||||||||||| || ||||||||||||||||| ||||| || |||||||||||||||||||||||||| ||||| |||||||| || |||    
T  46326532 cggctttcctgaactctggtactcttggcgccaccagattgcggctctcggatccctcggttaccgtgctgttgctcccgatctccgtggctatggtgac 46326631  T
Q  226 accgatg 232  Q
    || ||||    
T  46326632 acagatg 46326638  T

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Target: chr7; HSP #7
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 27 - 224
Target Start/End: Complemental strand, 46494835 - 46494638
Alignment:
Q  27 agagatggaaggaatagaacacagaacggtggaagtgaatggcatcaaaatgcatattgcagagaaaggaaaagaaggtccagttgttttgttccttcac 126  Q
    |||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||| || |||||||||||||| || |||||  |||||||||||    
T  46494835 agagatggaaggaatagagcacagaacagtggaagtgaatggaatcaaaatgcatattgctgaaaaaggaaaagaaggacctgttgtcctgttccttcac 46494736  T
Q  127 ggcttccctgaactctggtattcatggcgccaccagattgcagctcttggctccctcggttaccgtgctgttgctccagatcttcgtggctacggcga 224  Q
    || ||||||||||||||||| || ||||||||||||||||| ||||| ||||| ||||||||||| ||||| ||||| ||||||||||| || |||||    
T  46494735 ggattccctgaactctggtactcttggcgccaccagattgcggctctcggctctctcggttaccgggctgtggctcccgatcttcgtggttatggcga 46494638  T

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Target: chr7; HSP #8
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 26 - 236
Target Start/End: Original strand, 46322727 - 46322937
Alignment:
Q  26 gagagatggaaggaatagaacacagaacggtggaagtgaatggcatcaaaatgcatattgcagagaaaggaaaagaaggtccagttgttttgttccttca 125  Q
    ||||||||||||||||||| |||||||  |||||||||||||| ||||||||||||||||| |||||||| |||||||| || |||||||||||||||||    
T  46322727 gagagatggaaggaatagagcacagaagagtggaagtgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgttttgttccttca 46322826  T
Q  126 cggcttccctgaactctggtattcatggcgccaccagattgcagctcttggctccctcggttaccgtgctgttgctccagatcttcgtggctacggcgac 225  Q
    |||||| |||||||||||||| || ||||||||||||||||| ||||| ||||| ||||| ||||| || || ||||| ||||| |||||||| || |||    
T  46322827 cggctttcctgaactctggtactcttggcgccaccagattgcggctctcggctctctcggctaccgcgccgtagctccggatctacgtggctatggtgac 46322926  T
Q  226 accgatgctcc 236  Q
    || || |||||    
T  46322927 actgaggctcc 46322937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 29 - 237
Target Start/End: Complemental strand, 46517122 - 46516914
Alignment:
Q  29 agatggaaggaatagaacacagaacggtggaagtgaatggcatcaaaatgcatattgcagagaaaggaaaagaaggtccagttgttttgttccttcacgg 128  Q
    ||||||||||| |||| |||||||| |||||||||||||| |||||||||||| | |||||||||||||||||||| ||| | || ||||||||||| ||    
T  46517122 agatggaaggagtagagcacagaacagtggaagtgaatggaatcaaaatgcatgtcgcagagaaaggaaaagaaggaccaatagtattgttccttcatgg 46517023  T
Q  129 cttccctgaactctggtattcatggcgccaccagattgcagctcttggctccctcggttaccgtgctgttgctccagatcttcgtggctacggcgacacc 228  Q
     || |||||| ||||||| |||||||||||||||||||  |||||  ||||||| || |||||  | || |||||||||||  |||||||||| |||||     
T  46517022 ttttcctgaaatctggtactcatggcgccaccagattgttgctctcagctcccttggctaccgcaccgtggctccagatctctgtggctacggtgacact 46516923  T
Q  229 gatgctccc 237  Q
    |||||||||    
T  46516922 gatgctccc 46516914  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 41 - 165
Target Start/End: Original strand, 88036 - 88157
Alignment:
Q  41 tagaacacagaacggtggaagtgaatggcatcaaaatgcatattgcagagaaaggaaaagaaggtccagttgttttgttccttcacggcttccctgaact 140  Q
    |||| |||||||  || ||||| |||||||| ||||||||| |||||||||||||   |||||||||||| || ||| |  | ||||| |||||||| ||    
T  88036 tagagcacagaatagtagaagtaaatggcattaaaatgcatgttgcagagaaagg---agaaggtccagtggtgttgatgttgcacggtttccctgagct 88132  T
Q  141 ctggtattcatggcgccaccagatt 165  Q
     ||||| || |||||||| ||||||    
T  88133 atggtactcttggcgccatcagatt 88157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 164
Target Start/End: Complemental strand, 49833685 - 49833648
Alignment:
Q  127 ggcttccctgaactctggtattcatggcgccaccagat 164  Q
    ||||||||||| || |||||||||||||||||||||||    
T  49833685 ggcttccctgatctatggtattcatggcgccaccagat 49833648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 41 - 165
Target Start/End: Complemental strand, 37152194 - 37152073
Alignment:
Q  41 tagaacacagaacggtggaagtgaatggcatcaaaatgcatattgcagagaaaggaaaagaaggtccagttgttttgttccttcacggcttccctgaact 140  Q
    |||| |||||||  || ||||| |||||||| ||||||||| |||||||||||||   |||||||||||| || ||| |  | ||||| |||||||| ||    
T  37152194 tagagcacagaatagtagaagtaaatggcattaaaatgcatgttgcagagaaagg---agaaggtccagtggtgttgatgttgcacggtttccctgagct 37152098  T
Q  141 ctggtattcatggcgccaccagatt 165  Q
     ||||| || |||||||| ||||||    
T  37152097 atggtactcttggcgccatcagatt 37152073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 236
Target Start/End: Original strand, 7475308 - 7475396
Alignment:
Q  148 tcatggcgccaccagattgcagctcttggctccctcggttaccgtgctgttgctccagatcttcgtggctacggcgacaccgatgctcc 236  Q
    ||||||||||||||||||  ||||||  |||||||||| |||| ||  || ||| | ||||| |||||||| || ||||||||| ||||    
T  7475308 tcatggcgccaccagattatagctctcagctccctcggctaccatgtcgtggctactgatctccgtggctatggtgacaccgattctcc 7475396  T

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